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Conserved domains on  [gi|815890849|ref|NP_001295022|]
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transcription factor GATA-4 isoform 1 [Homo sapiens]

Protein Classification

GATA-type transcription factor( domain architecture ID 11786012)

GATA-type transcription factor binds to the DNA consensus sequence [AT]GATA[AG] and may function as a transcription factor/regulator

CATH:  3.30.50.10
Gene Ontology:  GO:0003700|GO:0006357|GO:0006355|GO:0008270|GO:0043565
PubMed:  31574210
SCOP:  4003617

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GATA-N super family cl25837
GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell ...
 1-205 1.35e-30

GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators.


The actual alignment was detected with superfamily member pfam05349:

Pssm-ID: 461628 [Multi-domain]  Cd Length: 174  Bit Score: 115.99  E-value: 1.35e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849    1 MYQSLAMAANHGPPPgayEAGGPGAFMHGAgaASSPVYVPTPRVPSSVLGLSYLQGGGAGSASGGASggssggaasgagp 80
Cdd:pfam05349   1 MYQSLALAANHGQAA---YDHDSGGFLHSA--ASSPVYVPTTRVPSMLPTLPYLQGCGSSQQSHPVS------------- 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849   81 gtqqGSPGWSQAGADGAAYTP--PPVSPRFSFPGTTgslaaaaaaAAAREAAAYSSGGGAAGAGLAGREQYG--RAGFAG 156
Cdd:pfam05349  63 ----SHSGWAQAGAESSSYNPgsPHPSPRFSYSHSP---------PGSNGTSRDAAYQSPLLISAGGREQYGalGRPLGG 129

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 815890849  157 SYSSPYPAYMAdvgasWAAAAAASAGPFDSPVLHSLPGRANP-AARHPNL 205
Cdd:pfam05349 130 SYPSPYPAYVS-----PEMAPSWTAGPFDSSVLHSLQGRGAPlPGRRPNL 174
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 271-322 2.91e-21

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


:

Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 86.66  E-value: 2.91e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 815890849 271 SCANCQTTTTTLWRRN-AEGEPVCNACGLYMKLHGVPRPLAMRKEG-IQTRKRK 322
Cdd:cd00202    1 ACSNCGTTTTPLWRRGpSGGSTLCNACGLYWKKHGVMRPLSKRKKDqIKRRNRK 54
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 217-267 1.12e-17

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


:

Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 76.64  E-value: 1.12e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 815890849 217 ECVNCGAMSTPLWRRDG-TGHYLCNACGLYHKMNGINRPLIKPQRRLSASRR 267
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPsGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRN 52
 
Name Accession Description Interval E-value
GATA-N pfam05349
GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell ...
 1-205 1.35e-30

GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators.


Pssm-ID: 461628 [Multi-domain]  Cd Length: 174  Bit Score: 115.99  E-value: 1.35e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849    1 MYQSLAMAANHGPPPgayEAGGPGAFMHGAgaASSPVYVPTPRVPSSVLGLSYLQGGGAGSASGGASggssggaasgagp 80
Cdd:pfam05349   1 MYQSLALAANHGQAA---YDHDSGGFLHSA--ASSPVYVPTTRVPSMLPTLPYLQGCGSSQQSHPVS------------- 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849   81 gtqqGSPGWSQAGADGAAYTP--PPVSPRFSFPGTTgslaaaaaaAAAREAAAYSSGGGAAGAGLAGREQYG--RAGFAG 156
Cdd:pfam05349  63 ----SHSGWAQAGAESSSYNPgsPHPSPRFSYSHSP---------PGSNGTSRDAAYQSPLLISAGGREQYGalGRPLGG 129

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 815890849  157 SYSSPYPAYMAdvgasWAAAAAASAGPFDSPVLHSLPGRANP-AARHPNL 205
Cdd:pfam05349 130 SYPSPYPAYVS-----PEMAPSWTAGPFDSSVLHSLQGRGAPlPGRRPNL 174
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 271-322 2.91e-21

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 86.66  E-value: 2.91e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 815890849 271 SCANCQTTTTTLWRRN-AEGEPVCNACGLYMKLHGVPRPLAMRKEG-IQTRKRK 322
Cdd:cd00202    1 ACSNCGTTTTPLWRRGpSGGSTLCNACGLYWKKHGVMRPLSKRKKDqIKRRNRK 54
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 217-267 1.12e-17

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 76.64  E-value: 1.12e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 815890849 217 ECVNCGAMSTPLWRRDG-TGHYLCNACGLYHKMNGINRPLIKPQRRLSASRR 267
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPsGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRN 52
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
269-316 1.69e-17

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 75.92  E-value: 1.69e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 815890849   269 GLSCANCQTTTTTLWRRNAEGE-PVCNACGLYMKLHGVP-RPLAMRKEGI 316
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGLkRPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 272-306 2.74e-14

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 66.57  E-value: 2.74e-14
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 815890849  272 CANCQTTTTTLWRRNAEGEP-VCNACGLYMKLHGVP 306
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKGLK 36
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
213-258 5.02e-14

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 66.29  E-value: 5.02e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 815890849   213 SEGRECVNCGAMSTPLWRRDGTGH-YLCNACGLYHKMNGI-NRPLIKP 258
Cdd:smart00401   1 GSGRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGlKRPLSLK 48
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 218-250 2.26e-12

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 61.18  E-value: 2.26e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 815890849  218 CVNCGAMSTPLWRRDGTGHY-LCNACGLYHKMNG 250
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKG 34
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
220-336 4.09e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 52.18  E-value: 4.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849 220 NCGAMSTPLWRR-DGTGHYLCNACGLYHKMNGINRPLikPQRRLSASRRVGLSCANCQTTTTTLWRrnaEGEPVCNACGL 298
Cdd:COG5641  303 LTTSTATPLWRRtSDKSSFSCNASGSALKPPGSKRPL--LPKPDPNSKRSNATCMNCSSTPTNKIL---SPPTTSNSPGA 377

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 815890849 299 YMKLHGVPRPLAMRKEGIQTRKRKPKN---LNKSKTPAAPS 336
Cdd:COG5641  378 QVKLPNQTRSTGATKKKITRRRMNSGKipaLSSSMKNPVPK 418
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
268-342 9.81e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 51.03  E-value: 9.81e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849 268 VGLSCANCQTTTTTLWRR-----NAEGEPVCNACGLYMKLHGVPR-PLAMRKEGIQTR-KRKPKNLNKSKtpAAPSGSES 340
Cdd:COG5641  157 QPHVCSNCKTTSTPLWRRassesSLPGNNLCNACGLYLKLHGSPRaPISLKSDSIKSRsSRSSHNNNDSN--GENANTES 234


                 ..
gi 815890849 341 LP 342
Cdd:COG5641  235 IG 236
 
Name Accession Description Interval E-value
GATA-N pfam05349
GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell ...
 1-205 1.35e-30

GATA-type transcription activator, N-terminal; GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators.


Pssm-ID: 461628 [Multi-domain]  Cd Length: 174  Bit Score: 115.99  E-value: 1.35e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849    1 MYQSLAMAANHGPPPgayEAGGPGAFMHGAgaASSPVYVPTPRVPSSVLGLSYLQGGGAGSASGGASggssggaasgagp 80
Cdd:pfam05349   1 MYQSLALAANHGQAA---YDHDSGGFLHSA--ASSPVYVPTTRVPSMLPTLPYLQGCGSSQQSHPVS------------- 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849   81 gtqqGSPGWSQAGADGAAYTP--PPVSPRFSFPGTTgslaaaaaaAAAREAAAYSSGGGAAGAGLAGREQYG--RAGFAG 156
Cdd:pfam05349  63 ----SHSGWAQAGAESSSYNPgsPHPSPRFSYSHSP---------PGSNGTSRDAAYQSPLLISAGGREQYGalGRPLGG 129

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 815890849  157 SYSSPYPAYMAdvgasWAAAAAASAGPFDSPVLHSLPGRANP-AARHPNL 205
Cdd:pfam05349 130 SYPSPYPAYVS-----PEMAPSWTAGPFDSSVLHSLQGRGAPlPGRRPNL 174
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 271-322 2.91e-21

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 86.66  E-value: 2.91e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 815890849 271 SCANCQTTTTTLWRRN-AEGEPVCNACGLYMKLHGVPRPLAMRKEG-IQTRKRK 322
Cdd:cd00202    1 ACSNCGTTTTPLWRRGpSGGSTLCNACGLYWKKHGVMRPLSKRKKDqIKRRNRK 54
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 217-267 1.12e-17

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 76.64  E-value: 1.12e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 815890849 217 ECVNCGAMSTPLWRRDG-TGHYLCNACGLYHKMNGINRPLIKPQRRLSASRR 267
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPsGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRN 52
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
269-316 1.69e-17

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 75.92  E-value: 1.69e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 815890849   269 GLSCANCQTTTTTLWRRNAEGE-PVCNACGLYMKLHGVP-RPLAMRKEGI 316
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGLkRPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 272-306 2.74e-14

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 66.57  E-value: 2.74e-14
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 815890849  272 CANCQTTTTTLWRRNAEGEP-VCNACGLYMKLHGVP 306
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKGLK 36
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
213-258 5.02e-14

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 66.29  E-value: 5.02e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 815890849   213 SEGRECVNCGAMSTPLWRRDGTGH-YLCNACGLYHKMNGI-NRPLIKP 258
Cdd:smart00401   1 GSGRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGlKRPLSLK 48
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 218-250 2.26e-12

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 61.18  E-value: 2.26e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 815890849  218 CVNCGAMSTPLWRRDGTGHY-LCNACGLYHKMNG 250
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKG 34
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
220-336 4.09e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 52.18  E-value: 4.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849 220 NCGAMSTPLWRR-DGTGHYLCNACGLYHKMNGINRPLikPQRRLSASRRVGLSCANCQTTTTTLWRrnaEGEPVCNACGL 298
Cdd:COG5641  303 LTTSTATPLWRRtSDKSSFSCNASGSALKPPGSKRPL--LPKPDPNSKRSNATCMNCSSTPTNKIL---SPPTTSNSPGA 377

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 815890849 299 YMKLHGVPRPLAMRKEGIQTRKRKPKN---LNKSKTPAAPS 336
Cdd:COG5641  378 QVKLPNQTRSTGATKKKITRRRMNSGKipaLSSSMKNPVPK 418
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
210-325 5.09e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 51.80  E-value: 5.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849 210 DDFSEGRECVNCGAMSTPLWRRD-----GTGHYLCNACGLYHKMNGINRPLIKPQRRLSASRRVGLSCANCQTTT-TTLW 283
Cdd:COG5641  153 DNSNQPHVCSNCKTTSTPLWRRAssessLPGNNLCNACGLYLKLHGSPRAPISLKSDSIKSRSSRSSHNNNDSNGeNANT 232

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 815890849 284 RRNAEGEPVCNACGLYMKLHGvpRPLAMRKEGIQTRKRKPKN 325
Cdd:COG5641  233 ESIGNSSASKLTKSWEERPQG--RQLLSDAGSLSPRSNNPKS 272
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
268-342 9.81e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 51.03  E-value: 9.81e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890849 268 VGLSCANCQTTTTTLWRR-----NAEGEPVCNACGLYMKLHGVPR-PLAMRKEGIQTR-KRKPKNLNKSKtpAAPSGSES 340
Cdd:COG5641  157 QPHVCSNCKTTSTPLWRRassesSLPGNNLCNACGLYLKLHGSPRaPISLKSDSIKSRsSRSSHNNNDSN--GENANTES 234


                 ..
gi 815890849 341 LP 342
Cdd:COG5641  235 IG 236
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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