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Conserved domains on  [gi|758818548|ref|NP_001291995|]
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transmembrane protein 59 isoform 5 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BSMAP super family cl13686
Brain specific membrane anchored protein; This family of proteins is found in eukaryotes. ...
 72-130 3.58e-37

Brain specific membrane anchored protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 285 and 331 amino acids in length. BSMAP has a putative transmembrane domain and is predicted to be a type I membrane glycoprotein.


The actual alignment was detected with superfamily member pfam12280:

Pssm-ID: 463519  Cd Length: 197  Bit Score: 125.59  E-value: 3.58e-37
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 758818548   72 RGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQNQLPFAELRQEQ 130
Cdd:pfam12280   1 RGCRLFSICQFVADSSDLNATKAECEAACREAYSDSDEQYACNLGCQNQLPEAERRQEQ 59
 
Name Accession Description Interval E-value
BSMAP pfam12280
Brain specific membrane anchored protein; This family of proteins is found in eukaryotes. ...
 72-130 3.58e-37

Brain specific membrane anchored protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 285 and 331 amino acids in length. BSMAP has a putative transmembrane domain and is predicted to be a type I membrane glycoprotein.


Pssm-ID: 463519  Cd Length: 197  Bit Score: 125.59  E-value: 3.58e-37
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 758818548   72 RGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQNQLPFAELRQEQ 130
Cdd:pfam12280   1 RGCRLFSICQFVADSSDLNATKAECEAACREAYSDSDEQYACNLGCQNQLPEAERRQEQ 59
 
Name Accession Description Interval E-value
BSMAP pfam12280
Brain specific membrane anchored protein; This family of proteins is found in eukaryotes. ...
 72-130 3.58e-37

Brain specific membrane anchored protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 285 and 331 amino acids in length. BSMAP has a putative transmembrane domain and is predicted to be a type I membrane glycoprotein.


Pssm-ID: 463519  Cd Length: 197  Bit Score: 125.59  E-value: 3.58e-37
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 758818548   72 RGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQNQLPFAELRQEQ 130
Cdd:pfam12280   1 RGCRLFSICQFVADSSDLNATKAECEAACREAYSDSDEQYACNLGCQNQLPEAERRQEQ 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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