NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|685844864|ref|NP_001288763|]
View 

protein C10 isoform 1 [Homo sapiens]

Protein Classification

P_C10 domain-containing protein( domain architecture ID 10633169)

P_C10 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
P_C10 pfam14974
Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) ...
 11-113 2.85e-51

Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) are implicated in the pathogenesis of colobomatous microphthalmia.


:

Pssm-ID: 464416  Cd Length: 103  Bit Score: 157.44  E-value: 2.85e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685844864   11 LSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEVIKAYGFSCDGEGVLKFARLVKSYEA 90
Cdd:pfam14974   1 LTSEQAKAILTEVLEALNTPENAAKLEEAKANAGNDMLKMMQFVFPLATQIQMEVIKKYGFPEDREGVMQFAQLIRSLEK 80

                          90       100
                  ....*....|....*....|...
gi 685844864   91 QDPEIASLSGKLKALFLPPMTLP 113
Cdd:pfam14974  81 DDPEVARLHSQLRSLFLPPVPLP 103
 
Name Accession Description Interval E-value
P_C10 pfam14974
Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) ...
 11-113 2.85e-51

Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) are implicated in the pathogenesis of colobomatous microphthalmia.


Pssm-ID: 464416  Cd Length: 103  Bit Score: 157.44  E-value: 2.85e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685844864   11 LSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEVIKAYGFSCDGEGVLKFARLVKSYEA 90
Cdd:pfam14974   1 LTSEQAKAILTEVLEALNTPENAAKLEEAKANAGNDMLKMMQFVFPLATQIQMEVIKKYGFPEDREGVMQFAQLIRSLEK 80

                          90       100
                  ....*....|....*....|...
gi 685844864   91 QDPEIASLSGKLKALFLPPMTLP 113
Cdd:pfam14974  81 DDPEVARLHSQLRSLFLPPVPLP 103
 
Name Accession Description Interval E-value
P_C10 pfam14974
Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) ...
 11-113 2.85e-51

Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) are implicated in the pathogenesis of colobomatous microphthalmia.


Pssm-ID: 464416  Cd Length: 103  Bit Score: 157.44  E-value: 2.85e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685844864   11 LSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEVIKAYGFSCDGEGVLKFARLVKSYEA 90
Cdd:pfam14974   1 LTSEQAKAILTEVLEALNTPENAAKLEEAKANAGNDMLKMMQFVFPLATQIQMEVIKKYGFPEDREGVMQFAQLIRSLEK 80

                          90       100
                  ....*....|....*....|...
gi 685844864   91 QDPEIASLSGKLKALFLPPMTLP 113
Cdd:pfam14974  81 DDPEVARLHSQLRSLFLPPVPLP 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH