|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
131-332 |
1.63e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.87 E-value: 1.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 210
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 211 gpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIy 290
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 573459761 291 egqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
131-324 |
5.24e-22 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 100.38 E-value: 5.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-SIREST 209
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALeRYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 210 LGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 289
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 573459761 290 YEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETL 324
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
146-419 |
2.92e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 98.07 E-value: 2.92e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 146 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSI--RESTLGPDHPAVAATLNN 223
Cdd:NF040586 404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGG 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 224 LAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVAR 303
Cdd:NF040586 484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 304 TKNNLASCYLKQGKYAEAETLYKEILTRAhvqefgsvdddhkpiwmhaeeREEMSKSRHheggtpyaeyggwykackvss 383
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALERY---------------------REVLGGPDH--------------------- 601
|
250 260 270
....*....|....*....|....*....|....*..
gi 573459761 384 PTVNTTLRNLGALYRRQGKL-EAAETLEECALRSRRQ 419
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLeEALELAEDTYERYRRR 638
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
146-415 |
4.52e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.22 E-value: 4.52e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 146 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLA 225
Cdd:NF040586 490 ALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLA 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 226 VLYGKRGKYKEAEPLCQRALEIREKVL-GTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVART 304
Cdd:NF040586 570 RDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAA 649
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 305 KNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGsvdDDHkpiwmhaeereemsksrhheggtPYAeyggwyKACKVssp 384
Cdd:NF040586 650 ALSLANDLRALGDADEARELAREVLDR-YRRVLG---EDH-----------------------PFT------LACRN--- 693
|
250 260 270
....*....|....*....|....*....|.
gi 573459761 385 tvnttlrNLGALYRRQGKLEAAETLEECALR 415
Cdd:NF040586 694 -------NLAVLLRALGDPEEARELAEAALE 717
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
126-331 |
2.75e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 91.90 E-value: 2.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 126 GGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD-VATMLNiLALVYRDQNKYKEAAHLLNDALS 204
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLD 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 205 IRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHP---DVAKQL-NNLALLCQNQGKYEAVE 280
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEA 755
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 573459761 281 RYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 331
Cdd:NF040586 756 LERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLAR 806
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
124-321 |
1.12e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.98 E-value: 1.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 124 QQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERT-SGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDA 202
Cdd:NF040586 552 RVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDT 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 203 LSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERY 282
Cdd:NF040586 632 YERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
170 180 190
....*....|....*....|....*....|....*....
gi 573459761 283 YQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEA 321
Cdd:NF040586 712 AEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAA 750
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
217-291 |
1.44e-17 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 77.43 E-value: 1.44e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 573459761 217 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYE 291
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
131-301 |
3.59e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.89 E-value: 3.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 210
Cdd:NF040586 644 PDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERL 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 211 GPDHPAVAATLNNLAVLYGKRGKYKEAEPLC----QRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRA 286
Cdd:NF040586 724 GPDHPYTLAAAVNLANDLAALGDLDAALGEEalerLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADT 803
|
170
....*....|....*
gi 573459761 287 LAIYEGQLGPDNPNV 301
Cdd:NF040586 804 LARLRRVLGPDHPDT 818
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
132-326 |
6.60e-10 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 59.66 E-value: 6.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 132 ARLRTlhNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 211
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 212 pdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvlGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIye 291
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190
....*....|....*....|....*....|....*
gi 573459761 292 gqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYK 326
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
301-419 |
9.72e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.53 E-value: 9.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 301 VARTKNNLASCYLKQGKYAEAETLYKEILTRAHVqefgSVDDDHkpiwmhaeereemsksrhheggtpyaeyggwykack 380
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARR----LLGPDH------------------------------------ 41
|
90 100 110
....*....|....*....|....*....|....*....
gi 573459761 381 vssPTVNTTLRNLGALYRRQGKLEAAETLEECALRSRRQ 419
Cdd:pfam13424 42 ---PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
218-250 |
1.20e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 1.20e-04
10 20 30
....*....|....*....|....*....|...
gi 573459761 218 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 250
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
139-219 |
1.56e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 44.52 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 139 NLVIQYAAQGRYEVAvpLCKQALEDLERTSGRG------HPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGP 212
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLLGEDlragpdHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 573459761 213 DHPAVAA 219
Cdd:NF040586 814 DHPDTVA 820
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
187-332 |
7.00e-04 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 41.95 E-value: 7.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 187 RDQNKYKEAAHLL----NDALSIRESTLGPDhpAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPdvAKQ 262
Cdd:cd24145 114 SELGKWELRERLLkkavEILLKLGELWMSPS--EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHS 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 263 ---LNNLAL-LCQNQGK---------------------YEAVERYYQRALAIYEgqlgpDNPNVARTKN----------N 307
Cdd:cd24145 190 lvlMNNEAAeLALHALRkplsstlieasrlpqksrdqlLEAALKWAQKALDVAK-----SIKPKDRDPEcdqacalalyN 264
|
170 180
....*....|....*....|....*
gi 573459761 308 LASCYLKQGKYAEAETLYKEILTRA 332
Cdd:cd24145 265 LGVIAEMLGNLDEARKLYKEAISLA 289
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
132-315 |
2.46e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 40.84 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 132 ARLRTLHNLviqyaAQGRYEVAVPLCKQALedlertsgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLG 211
Cdd:PRK11447 272 ARAQGLAAV-----DSGQGGKAIPELQQAV--------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 212 PDHPAVAATLNN--LAVLYG----KRGKYKEAEPLCQRALEIREK----VLGTNhpDVAkqlnnLAllcqnQGKYEAVER 281
Cdd:PRK11447 339 RDKWESLLKVNRywLLIQQGdaalKANNLAQAERLYQQARQVDNTdsyaVLGLG--DVA-----MA-----RKDYAAAER 406
|
170 180 190
....*....|....*....|....*....|....
gi 573459761 282 YYQRALaiyegQLGPDNPNVARtknNLASCYLKQ 315
Cdd:PRK11447 407 YYQQAL-----RMDPGNTNAVR---GLANLYRQQ 432
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
131-332 |
1.63e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.87 E-value: 1.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 210
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 211 gpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIy 290
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 573459761 291 egqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
131-324 |
5.24e-22 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 100.38 E-value: 5.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-SIREST 209
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALeRYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 210 LGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 289
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 573459761 290 YEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETL 324
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
146-419 |
2.92e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 98.07 E-value: 2.92e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 146 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSI--RESTLGPDHPAVAATLNN 223
Cdd:NF040586 404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGG 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 224 LAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVAR 303
Cdd:NF040586 484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 304 TKNNLASCYLKQGKYAEAETLYKEILTRAhvqefgsvdddhkpiwmhaeeREEMSKSRHheggtpyaeyggwykackvss 383
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALERY---------------------REVLGGPDH--------------------- 601
|
250 260 270
....*....|....*....|....*....|....*..
gi 573459761 384 PTVNTTLRNLGALYRRQGKL-EAAETLEECALRSRRQ 419
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLeEALELAEDTYERYRRR 638
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
105-332 |
4.93e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 96.99 E-value: 4.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 105 EEEEDPSNGLSRGQGATAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRghPDVATMLNILAL 184
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAAL--LLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 185 VYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLN 264
Cdd:COG3914 87 LLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 573459761 265 NLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALEL--------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
146-415 |
4.52e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.22 E-value: 4.52e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 146 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLA 225
Cdd:NF040586 490 ALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLA 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 226 VLYGKRGKYKEAEPLCQRALEIREKVL-GTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVART 304
Cdd:NF040586 570 RDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAA 649
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 305 KNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGsvdDDHkpiwmhaeereemsksrhheggtPYAeyggwyKACKVssp 384
Cdd:NF040586 650 ALSLANDLRALGDADEARELAREVLDR-YRRVLG---EDH-----------------------PFT------LACRN--- 693
|
250 260 270
....*....|....*....|....*....|.
gi 573459761 385 tvnttlrNLGALYRRQGKLEAAETLEECALR 415
Cdd:NF040586 694 -------NLAVLLRALGDPEEARELAEAALE 717
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
126-331 |
2.75e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 91.90 E-value: 2.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 126 GGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD-VATMLNiLALVYRDQNKYKEAAHLLNDALS 204
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLD 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 205 IRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHP---DVAKQL-NNLALLCQNQGKYEAVE 280
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEA 755
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 573459761 281 RYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 331
Cdd:NF040586 756 LERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLAR 806
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
124-321 |
1.12e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.98 E-value: 1.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 124 QQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERT-SGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDA 202
Cdd:NF040586 552 RVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDT 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 203 LSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERY 282
Cdd:NF040586 632 YERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
170 180 190
....*....|....*....|....*....|....*....
gi 573459761 283 YQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEA 321
Cdd:NF040586 712 AEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAA 750
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
131-329 |
1.98e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 84.67 E-value: 1.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestl 210
Cdd:COG0457 39 PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD---- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 211 gpdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIY 290
Cdd:COG0457 107 ----PDDAEALYNLGLALLELGRYDEAIEAYERALELD--------PDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
170 180 190
....*....|....*....|....*....|....*....
gi 573459761 291 EGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEIL 329
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAI 213
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
144-417 |
8.91e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 83.63 E-value: 8.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 144 YAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgPDHPAVaatLNN 223
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD-----PDDAEA---LRL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 224 LAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVAR 303
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 304 TKNNLASCYLKQGKYAEAETLYKEILTRahvqefgsvDDDHKPIwmhaeeREEMSKSRHHEGGtpYAEYGGWYKACKVSS 383
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQ---------DPDYLPA------LPRLAELYEKLGD--PEEALELLRKALELD 242
|
250 260 270
....*....|....*....|....*....|....
gi 573459761 384 PTvNTTLRNLGALYRRQGKLEAAETLEECALRSR 417
Cdd:COG2956 243 PS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
217-291 |
1.44e-17 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 77.43 E-value: 1.44e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 573459761 217 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYE 291
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
131-333 |
4.67e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 81.31 E-value: 4.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 210
Cdd:COG2956 73 PDRAEALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL----- 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 211 gpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIy 290
Cdd:COG2956 140 ---GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERALEQ- 207
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 573459761 291 egqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAH 333
Cdd:COG2956 208 -------DPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
174-250 |
1.60e-16 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 74.35 E-value: 1.60e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 573459761 174 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 250
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
131-301 |
3.59e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.89 E-value: 3.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 210
Cdd:NF040586 644 PDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERL 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 211 GPDHPAVAATLNNLAVLYGKRGKYKEAEPLC----QRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRA 286
Cdd:NF040586 724 GPDHPYTLAAAVNLANDLAALGDLDAALGEEalerLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADT 803
|
170
....*....|....*
gi 573459761 287 LAIYEGQLGPDNPNV 301
Cdd:NF040586 804 LARLRRVLGPDHPDT 818
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
258-332 |
2.31e-14 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 68.18 E-value: 2.31e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 573459761 258 DVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
182-332 |
1.01e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 68.29 E-value: 1.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 182 LALVYRDQNKYKEAAHLLNDALSIRestlgPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAK 261
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELD-----PDNPEA---FALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 573459761 262 QLNNLALLCQNQGKYEAVERYYQRALAIYegqlgPDNPNVARtknNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLD-----PEHPEAYL---RLARAYRALGRPDEAIAALEKALELD 136
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
132-290 |
2.48e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.14 E-value: 2.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 132 ARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlg 211
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 573459761 212 PDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEirekvLGTNHPDVakqLNNLALLCQNQGKYEAVERYYQRALAIY 290
Cdd:COG4783 69 PDEPEA---RLNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
217-258 |
5.17e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 63.29 E-value: 5.17e-13
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 573459761 217 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPD 258
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
133-208 |
9.33e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 63.56 E-value: 9.33e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 573459761 133 RLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRES 208
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
181-444 |
1.30e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.22 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 181 ILALVYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVA 260
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 261 KQLNNLALLCQNQGKYEAVERYYQRALA--------------IYE------------GQLGPDNPNVARTKNNLASCYLK 314
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLLEldpddaealrllaeIYEqegdwekaievlERLLKLGPENAHAYCELAELYLE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 315 QGKYAEAETLYKEILtrahvqefgSVDDDHKPIWMHAEEREEMSKSrhheggtpYAEYGGWYKACKVSSPTVNTTLRNLG 394
Cdd:COG2956 157 QGDYDEAIEALEKAL---------KLDPDCARALLLLAELYLEQGD--------YEEAIAALERALEQDPDYLPALPRLA 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 573459761 395 ALYRRQGKLEAAET-LEECAlrsrRQGTDPISQTKVAELLGESDGRRTSQE 444
Cdd:COG2956 220 ELYEKLGDPEEALElLRKAL----ELDPSDDLLLALADLLERKEGLEAALA 266
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
227-329 |
3.99e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.50 E-value: 3.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 227 LYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYyQRALAIyegqlgpdNPNVARTKN 306
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|...
gi 573459761 307 NLASCYLKQGKYAEAETLYKEIL 329
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERAL 86
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
176-332 |
1.54e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.67 E-value: 1.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 176 ATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtn 255
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 573459761 256 HPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
131-294 |
1.70e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.26 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestl 210
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALE--------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 211 gpdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIY 290
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
....
gi 573459761 291 EGQL 294
Cdd:COG0457 217 AALA 220
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
185-289 |
3.90e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.41 E-value: 3.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 185 VYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGKRGKYKEAEPLcQRALEIrekvlgtnHPDVAKQLN 264
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*
gi 573459761 265 NLALLCQNQGKYEAVERYYQRALAI 289
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALEL 88
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
216-332 |
1.44e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 1.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 216 AVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYegqlg 295
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110
....*....|....*....|....*....|....*..
gi 573459761 296 PDNPNVArtkNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:COG4783 69 PDEPEAR---LNLGLALLKAGDYDEALALLEKALKLD 102
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
123-289 |
1.84e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.59 E-value: 1.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 123 AQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDA 202
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 203 LSirestLGPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERY 282
Cdd:COG5010 81 LQ-----LDPNNPEL---YYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAA 144
|
....*..
gi 573459761 283 YQRALAI 289
Cdd:COG5010 145 LQRALGT 151
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
139-326 |
6.43e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.54 E-value: 6.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 139 NLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgpdhPAVA 218
Cdd:COG4785 36 ALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 219 ATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALA---------- 288
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEKALEldpndperal 179
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 573459761 289 ---IYEGQLGPDnPNVARTKNNLASCYLKQGKYAEAETLYK 326
Cdd:COG4785 180 wlyLAERKLDPE-KALALLLEDWATAYLLQGDTEEARELFK 219
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
132-326 |
6.60e-10 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 59.66 E-value: 6.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 132 ARLRTlhNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 211
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 212 pdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvlGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIye 291
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190
....*....|....*....|....*....|....*
gi 573459761 292 gqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYK 326
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
214-332 |
1.90e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.78 E-value: 1.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 214 HPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegq 293
Cdd:COG4235 13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL---- 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 573459761 294 lgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:COG4235 81 ----DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
144-252 |
2.06e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 2.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 144 YAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLlNDALSIrestlgpdHPAVAATLNN 223
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64
|
90 100
....*....|....*....|....*....
gi 573459761 224 LAVLYGKRGKYKEAEPLCQRALEIREKVL 252
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
175-215 |
3.81e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 52.12 E-value: 3.81e-09
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 573459761 175 VATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHP 215
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
9-330 |
5.70e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.94 E-value: 5.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 9 RDEPAGHRLSQE--EILGSTRLVSQGLEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKA---RQLRRSME----NIE 79
Cdd:TIGR02917 591 NEAADAAPDSPEawLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAkaiTSLKRALElkpdNTE 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 80 LGLSEAQ---EEKEGDATKDSLDDLFPNEEEEDPSNGLsrgQGATAAQQGGYeiPARLRTLHNLVIQY------AAQGRY 150
Cdd:TIGR02917 671 AQIGLAQlllAAKRTESAKKIAKSLQKQHPKAALGFEL---EGDLYLRQKDY--PAAIQAYRKALKRApssqnaIKLHRA 745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 151 EVAVPLCKQALEDLErTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGK 230
Cdd:TIGR02917 746 LLASGNTAEAVKTLE-AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLE 816
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 231 RgKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLAS 310
Cdd:TIGR02917 817 L-KDPRALEYAERALKLA--------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLAL 879
|
330 340
....*....|....*....|
gi 573459761 311 CYLKQGKYAEAETLYKEILT 330
Cdd:TIGR02917 880 ALLATGRKAEARKELDKLLN 899
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
230-331 |
1.25e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 53.07 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 230 KRGKYKEAEPLCQRALEirekvlgtNHPD---VAKQLNNLALLCQNQGKYEAVERYYQRALAIYegqlgPDNPNVARTKN 306
Cdd:COG1729 5 KAGDYDEAIAAFKAFLK--------RYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALL 71
|
90 100
....*....|....*....|....*
gi 573459761 307 NLASCYLKQGKYAEAETLYKEILTR 331
Cdd:COG1729 72 KLGLSYLELGDYDKARATLEELIKK 96
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
120-247 |
2.84e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.04 E-value: 2.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 120 ATAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLL 199
Cdd:COG5010 40 DELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL--------DPNNPELYYNLALLYSRSGDKDEAKEYY 111
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 573459761 200 NDALSirestLGPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEI 247
Cdd:COG5010 112 EKALA-----LSPDNPNA---YSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
77-288 |
4.30e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.77 E-value: 4.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 77 NIELGLSEAQEEKEGDATKDSLDDLFPNEEEEDPSNGLSRGQGATAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPL 156
Cdd:COG4785 16 AAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIAD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 157 CKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgPDHpavAATLNNLAVLYGKRGKYKE 236
Cdd:COG4785 96 FDQALEL--------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD-----PDY---AYAYLNRGIALYYLGRYEL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 573459761 237 AEPLCQRALEIREK----------VLGTNHPDVAKQL--NNLALLCQNQGKYEAVERYYQRALA 288
Cdd:COG4785 160 AIADLEKALELDPNdperalwlylAERKLDPEKALALllEDWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
131-247 |
4.03e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.42 E-value: 4.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestL 210
Cdd:COG4783 35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALE--------LDPDEPEARLNLGLALLKAGDYDEALALLEKALK-----L 101
|
90 100 110
....*....|....*....|....*....|....*..
gi 573459761 211 GPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEI 247
Cdd:COG4783 102 DPEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
131-247 |
7.87e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 7.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLertsgrghPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestL 210
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALA-----L 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 573459761 211 GPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEI 247
Cdd:COG4235 81 DPDNPEA---LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
81-332 |
1.43e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 51.24 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 81 GLSEAQEEKEGDATKDSLDDLFPNEE--------EEDPSNG----------LSRGQGATA------AQQGGYEiPARLRT 136
Cdd:TIGR02917 16 ACGDQSPEELIEAAKSYLQKNKYKAAiiqlknalQKDPNDAearfllgkiyLALGDYAAAekelrkALSLGYP-KNQVLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 137 LhnLVIQYAAQGRYEvavplckQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgpdhPA 216
Cdd:TIGR02917 95 L--LARAYLLQGKFQ-------QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID--------PR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 217 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALaiyegQLGP 296
Cdd:TIGR02917 158 SLYAKLGLAQLALAENRFDEARALIDEVLTA--------DPGNVDALLLKGDLLLSLGNIELALAAYRKAI-----ALRP 224
|
250 260 270
....*....|....*....|....*....|....*.
gi 573459761 297 DNPNVartKNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:TIGR02917 225 NNIAV---LLALATILIEAGEFEEAEKHADALLKKA 257
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
186-310 |
1.90e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.91 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 186 YRDQNKYKEAAHLLNDALSirestLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvLGTNHPDVAKQLNN 265
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDALLK 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 573459761 266 LALLCQNQGKYEAVERYYQRALAIYegqlgPDNPNVARTKNNLAS 310
Cdd:COG1729 73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLAR 112
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
134-174 |
5.06e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 43.26 E-value: 5.06e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 573459761 134 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD 174
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
301-419 |
9.72e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.53 E-value: 9.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 301 VARTKNNLASCYLKQGKYAEAETLYKEILTRAHVqefgSVDDDHkpiwmhaeereemsksrhheggtpyaeyggwykack 380
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARR----LLGPDH------------------------------------ 41
|
90 100 110
....*....|....*....|....*....|....*....
gi 573459761 381 vssPTVNTTLRNLGALYRRQGKLEAAETLEECALRSRRQ 419
Cdd:pfam13424 42 ---PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
259-300 |
1.03e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 42.49 E-value: 1.03e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 573459761 259 VAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPN 300
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
256-333 |
1.79e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 1.79e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 573459761 256 HPDVAKQLNNLALLCQNQGKYEAVERYYQRALaiyegQLGPDNPNVartKNNLASCYLKQGKYAEAETLYKEILTRAH 333
Cdd:COG4235 13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKAL-----RLDPDNADA---LLDLAEALLAAGDTEEAEELLERALALDP 82
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
218-250 |
2.36e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.25 E-value: 2.36e-05
10 20 30
....*....|....*....|....*....|...
gi 573459761 218 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 250
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
218-250 |
1.20e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 1.20e-04
10 20 30
....*....|....*....|....*....|...
gi 573459761 218 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 250
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
139-219 |
1.56e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 44.52 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 139 NLVIQYAAQGRYEVAvpLCKQALEDLERTSGRG------HPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGP 212
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLLGEDlragpdHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 573459761 213 DHPAVAA 219
Cdd:NF040586 814 DHPDTVA 820
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
39-294 |
1.97e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.20 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 39 EHQAVLQSLSQTIECLQqGGHEEGLVH-EKARQL---------RRSMENIELGLSEAQEEKEGDATKdslddlfpnEEEE 108
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLK-GKHLEALADlSKSIELdprvtqsyiKRASMNLELGDPDKAEEDFDKALK---------LNSE 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 109 DPSNGLSRGQ-----GATAAQQGGYEIPARLRT------LHNLVIQYAaQGRYEVAVPLCKQALEDLERTsgrghPDVAt 177
Cdd:TIGR00990 398 DPDIYYHRAQlhfikGEFAQAGKDYQKSIDLDPdfifshIQLGVTQYK-EGSIASSMATFRRCKKNFPEA-----PDVY- 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 178 mlNILALVYRDQNKYKEAAHLLNDALSIrESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHP 257
Cdd:TIGR00990 471 --NYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--------DP 539
|
250 260 270
....*....|....*....|....*....|....*....
gi 573459761 258 DVAKQLNNLALLCQNQGKYEAVERYYQRA--LAIYEGQL 294
Cdd:TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAaeLARTEGEL 578
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
178-329 |
3.00e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.59 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 178 MLNILALVYRDQNKYKEAAHLLNDALSIREStlgpdhpavaATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHP 257
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLF----------AAVLALAIALADLALALAAAALAAAALAAERIDRALALP 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 573459761 258 DVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEIL 329
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADFDQALEL--------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
182-247 |
3.07e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 3.07e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 573459761 182 LALVYRDQNKYKEAAHLLNDALsiresTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEI 247
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAAL-----ARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
260-291 |
4.08e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 4.08e-04
10 20 30
....*....|....*....|....*....|..
gi 573459761 260 AKQLNNLALLCQNQGKYEAVERYYQRALAIYE 291
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
265-332 |
5.12e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 5.12e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 573459761 265 NLALLCQNQGKYEAVERYYQRALAiyegqLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
220-253 |
5.68e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 37.52 E-value: 5.68e-04
10 20 30
....*....|....*....|....*....|....
gi 573459761 220 TLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLG 253
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
121-342 |
6.26e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 41.91 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 121 TAAQQGGYEiPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLN 200
Cdd:pfam17874 68 ALARRADSP-HVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 201 DALSIrESTLGPDHPAVAATLnnLAVLYGKRGKYKEAEPLCQRALEI-REKVLGTNHPDVAKQLnnLALLCQNQGKYEAV 279
Cdd:pfam17874 147 QGIQL-GRQWEPDAAVDAYVL--LARIALAQGELEEALTLLRRAELLaRQSFFHVDWLANAERV--RVRLWLARGDLRAA 221
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 573459761 280 EryyqRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAhvQEFGSVDD 342
Cdd:pfam17874 222 V----RWLRAAEPPSDADNHFLERELRNLARVLLALGRFDDALSLLERLQNLA--EQLGRVRS 278
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
187-332 |
7.00e-04 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 41.95 E-value: 7.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 187 RDQNKYKEAAHLL----NDALSIRESTLGPDhpAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPdvAKQ 262
Cdd:cd24145 114 SELGKWELRERLLkkavEILLKLGELWMSPS--EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHS 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 263 ---LNNLAL-LCQNQGK---------------------YEAVERYYQRALAIYEgqlgpDNPNVARTKN----------N 307
Cdd:cd24145 190 lvlMNNEAAeLALHALRkplsstlieasrlpqksrdqlLEAALKWAQKALDVAK-----SIKPKDRDPEcdqacalalyN 264
|
170 180
....*....|....*....|....*
gi 573459761 308 LASCYLKQGKYAEAETLYKEILTRA 332
Cdd:cd24145 265 LGVIAEMLGNLDEARKLYKEAISLA 289
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
131-210 |
7.84e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 7.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 131 PARLRTLHNLVIQYAAQGRYEVAVPLcKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 210
Cdd:COG3063 23 PDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
158-332 |
1.00e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 158 KQALEDLERTSGRgHPDVATMLNILALVYRDQNKYKEAAHLLNDALsiresTLGPDHPAVAATLNNLAVLygkRGKYKEA 237
Cdd:TIGR02917 618 NKAVSSFKKLLAL-QPDSALALLLLADAYAVMKNYAKAITSLKRAL-----ELKPDNTEAQIGLAQLLLA---AKRTESA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 238 EPLCQRALEIREKvlgtnHPDVAKQLNNLALLcqnQGKYEAVERYYQRALAIYEG-----QLG----------------- 295
Cdd:TIGR02917 689 KKIAKSLQKQHPK-----AALGFELEGDLYLR---QKDYPAAIQAYRKALKRAPSsqnaiKLHrallasgntaeavktle 760
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 573459761 296 ---PDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:TIGR02917 761 awlKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA 800
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
142-237 |
1.19e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 142 IQYAAQGRYEVAVPLCKQALEDlertsgrgHPD---VATMLNILALVYRDQNKYKEAAHLLNDALSirestLGPDHPAVA 218
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKR--------YPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAP 67
|
90
....*....|....*....
gi 573459761 219 ATLNNLAVLYGKRGKYKEA 237
Cdd:COG1729 68 DALLKLGLSYLELGDYDKA 86
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
140-329 |
1.76e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 140 LVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgPDHPAVAA 219
Cdd:TIGR02917 437 LILSYLRSGQFDKALAAAKKLEK--------KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-----PDFFPAAA 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 220 tlnNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPdnp 299
Cdd:TIGR02917 504 ---NLARIDIQEGNPDDAIQRFEKVLTI--------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP--- 569
|
170 180 190
....*....|....*....|....*....|
gi 573459761 300 nvartKNNLASCYLKQGKYAEAETLYKEIL 329
Cdd:TIGR02917 570 -----ALALAQYYLGKGQLKKALAILNEAA 594
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
273-329 |
2.13e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.79 E-value: 2.13e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 573459761 273 QGKYEAVERYYQRALAIYegqlgPDNPNVartKNNLASCYLKQGKYAEAETLYKEIL 329
Cdd:pfam14559 1 EGDYAEALELLEQALAED-----PDNAEA---RLGLAEALLALGRLDEAEALLAALP 49
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
132-315 |
2.46e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 40.84 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 132 ARLRTLHNLviqyaAQGRYEVAVPLCKQALedlertsgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLG 211
Cdd:PRK11447 272 ARAQGLAAV-----DSGQGGKAIPELQQAV--------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 212 PDHPAVAATLNN--LAVLYG----KRGKYKEAEPLCQRALEIREK----VLGTNhpDVAkqlnnLAllcqnQGKYEAVER 281
Cdd:PRK11447 339 RDKWESLLKVNRywLLIQQGdaalKANNLAQAERLYQQARQVDNTdsyaVLGLG--DVA-----MA-----RKDYAAAER 406
|
170 180 190
....*....|....*....|....*....|....
gi 573459761 282 YYQRALaiyegQLGPDNPNVARtknNLASCYLKQ 315
Cdd:PRK11447 407 YYQQAL-----RMDPGNTNAVR---GLANLYRQQ 432
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
301-344 |
2.61e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.94 E-value: 2.61e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 573459761 301 VARTKNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGsvdDDH 344
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAI-RERVLG---PDH 40
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
170-329 |
3.32e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.89 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 170 RGHPDVATmlnILALVYRDQNKYKEAAHLLNDALSIREStlgpdhpavaatlNNLAVLYG--KRGKYKEAEPLCQRALEi 247
Cdd:COG3071 190 RRDPELAA---AYARALIALGDHDEAERLLREALKRQWD-------------PRLVRLYGrlQGGDPAKQLKRAEKWLK- 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 248 rekvlgtNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlGPDnpnvARTKNNLASCYLKQGKYAEAETLYKE 327
Cdd:COG3071 253 -------KHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL-----RPS----AEAYAELARLLEQLGDPEEAAEHYRK 316
|
..
gi 573459761 328 IL 329
Cdd:COG3071 317 AL 318
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
302-329 |
3.52e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 3.52e-03
10 20
....*....|....*....|....*...
gi 573459761 302 ARTKNNLASCYLKQGKYAEAETLYKEIL 329
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
260-289 |
3.77e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 3.77e-03
10 20 30
....*....|....*....|....*....|
gi 573459761 260 AKQLNNLALLCQNQGKYEAVERYYQRALAI 289
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
302-332 |
4.16e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.16e-03
10 20 30
....*....|....*....|....*....|.
gi 573459761 302 ARTKNNLASCYLKQGKYAEAETLYKEILTRA 332
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELD 31
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
388-419 |
4.90e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.17 E-value: 4.90e-03
10 20 30
....*....|....*....|....*....|..
gi 573459761 388 TTLRNLGALYRRQGKLEAAETLEECALRSRRQ 419
Cdd:pfam13374 3 SSLNNLANALRAQGRYDEAEELLEEALAIRER 34
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
144-203 |
5.27e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.77 E-value: 5.27e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 144 YAAQGRYEVAVPLCKQALEdlertSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 203
Cdd:pfam13432 7 ALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAAL 61
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
263-297 |
7.20e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 34.44 E-value: 7.20e-03
10 20 30
....*....|....*....|....*....|....*
gi 573459761 263 LNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPD 297
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
232-322 |
7.97e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 37.34 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573459761 232 GKYKEAEPLCQRALEIREkvlgtNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASC 311
Cdd:PRK02603 49 GEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--------NPKQPSALNNIAVI 115
|
90
....*....|.
gi 573459761 312 YLKQGKYAEAE 322
Cdd:PRK02603 116 YHKRGEKAEEA 126
|
|
| |
