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Conserved domains on  [gi|568384734|ref|NP_001275511|]
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tetratricopeptide repeat protein 14 isoform c [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 312-437 1.09e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 68.68  E-value: 1.09e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 312 KIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgq 391
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-- 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 568384734 392 leeeeKFLNAESYYKKALALDETFKDAEDALQKLHKYMQKSLELRE 437
Cdd:COG4783   87 -----DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
124-207 1.10e-05

Ribosomal protein S1-like RNA-binding domain;


:

Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 43.75  E-value: 1.10e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734   124 ERGDIVIGRISSIREFGFFmVLICLGsgimrdiahleITALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKL 203
Cdd:smart00316   1 EVGDVVEGTVTEITPGGAF-VDLGNG-----------VEGLIPISEL-SDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRI 67


                   ....
gi 568384734   204 AVSL 207
Cdd:smart00316  68 ILSL 71
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 312-437 1.09e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 68.68  E-value: 1.09e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 312 KIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgq 391
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-- 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 568384734 392 leeeeKFLNAESYYKKALALDETFKDAEDALQKLHKYMQKSLELRE 437
Cdd:COG4783   87 -----DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
124-207 1.10e-05

Ribosomal protein S1-like RNA-binding domain;


Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 43.75  E-value: 1.10e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734   124 ERGDIVIGRISSIREFGFFmVLICLGsgimrdiahleITALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKL 203
Cdd:smart00316   1 EVGDVVEGTVTEITPGGAF-VDLGNG-----------VEGLIPISEL-SDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRI 67


                   ....
gi 568384734   204 AVSL 207
Cdd:smart00316  68 ILSL 71
TPR_11 pfam13414
TPR repeat;
317-355 3.37e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.30  E-value: 3.37e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 568384734  317 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKG 355
Cdd:pfam13414   4 YYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 330-411 9.59e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.93  E-value: 9.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 330 YNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHrNARKYLCqtLvergGQLEEEEkflNAESYYKKAL 409
Cdd:cd24142   23 LQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG-GYEKYLY--L----GQLSGGE---EALQYYEKGI 92


                 ..
gi 568384734 410 AL 411
Cdd:cd24142   93 EI 94
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 283-431 3.37e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 3.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734  283 GLQSKNFSEDDFASALRKKQSASWAlkcvKIGVDYFKV--GRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA 360
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYA----KLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734  361 IEDFELALENCPTHRNARKYLCQTLVERgGQLEEEEKFLNA---------ESYYKKALaLDETFKDAEDALQKLHKYMQK 431
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEA-GEFEEAEKHADAllkkapnspLAHYLKAL-VDFQKKNYEDARETLQDALKS 290
PRK00087 PRK00087
bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;
115-207 8.48e-04

bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;


Pssm-ID: 234623 [Multi-domain]  Cd Length: 647  Bit Score: 42.63  E-value: 8.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 115 RRELFFRDIERGDIVIGRISSIREFGFFMvliclgsgimrDIAHLEitALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIK 194
Cdd:PRK00087 467 KKEETWNSLEEGDVVEGEVKRLTDFGAFV-----------DIGGVD--GLLHVSEI-SWGRVEKPSDVLKVGDEIKVYIL 532

                         90
                 ....*....|...
gi 568384734 195 DIDRYHEKLAVSL 207
Cdd:PRK00087 533 DIDKENKKLSLSL 545
RpsA COG0539
Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 ...
 115-207 3.17e-03

Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440305 [Multi-domain]  Cd Length: 348  Bit Score: 40.03  E-value: 3.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 115 RRELFFRDIERGDIVIGRISSIREFGFFmvlICLGsGI-----MRDIAHleitalcplrdvpSHSNHgdPLSYYQTGDII 189
Cdd:COG0539  179 KREELLEKLEEGDVVEGTVKNITDFGAF---VDLG-GVdgllhISEISW-------------GRVKH--PSEVLKVGDEV 239

                         90
                 ....*....|....*...
gi 568384734 190 RAGIKDIDRYHEKLAVSL 207
Cdd:COG0539  240 EVKVLKIDREKERISLSL 257
S1_like cd00164
S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of ...
 129-206 9.51e-03

S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.


Pssm-ID: 238094 [Multi-domain]  Cd Length: 65  Bit Score: 35.05  E-value: 9.51e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568384734 129 VIGRISSIREFGFFmvlICLGSGImrdiahleiTALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVS 206
Cdd:cd00164    1 VTGKVVSITKFGVF---VELEDGV---------EGLVHISEL-SDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 312-437 1.09e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 68.68  E-value: 1.09e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 312 KIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgq 391
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-- 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 568384734 392 leeeeKFLNAESYYKKALALDETFKDAEDALQKLHKYMQKSLELRE 437
Cdd:COG4783   87 -----DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
232-440 2.69e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.04  E-value: 2.69e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 232 YYRRSVELNSNSLESYENvmqssLGFVnpgvveflLEKLG-IDESnppslmrglqsknfsEDDFASALRKKQSASWALkc 310
Cdd:COG0457   30 DYEKALELDPDDAEALYN-----LGLA--------YLRLGrYEEA---------------LADYEQALELDPDDAEAL-- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 311 VKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgG 390
Cdd:COG0457   80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL-G 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 568384734 391 QLEEEEKFLNAESYYKKALALDETFKDAEDALQKLHKYMQKSLELREKQA 440
Cdd:COG0457  159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
313-438 4.72e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 4.72e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 313 IGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQL 392
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL-GRY 92

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 568384734 393 EEeekflnAESYYKKALALDETFKDAED----ALQKLHKYmQKSLELREK 438
Cdd:COG0457   93 EE------ALEDYDKALELDPDDAEALYnlglALLELGRY-DEAIEAYER 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 317-422 4.94e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.49  E-value: 4.94e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 317 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLcqtlverGGQLEEEE 396
Cdd:COG4235   27 YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL-------GLAAFQQG 99

                         90       100
                 ....*....|....*....|....*.
gi 568384734 397 KFLNAESYYKKALALDEtfKDAEDAL 422
Cdd:COG4235  100 DYAEAIAAWQKLLALLP--ADAPARL 123
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 294-426 1.40e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.52  E-value: 1.40e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 294 FASALRKKQSASWALkcVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPT 373
Cdd:COG2956   65 HQKLLERDPDRAEAL--LELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568384734 374 HRNArkylcqtLVERGGQLEEEEKFLNAESYYKKALALDETFKDAEDALQKLH 426
Cdd:COG2956  143 NAHA-------YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELY 188
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 317-412 1.96e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 62.67  E-value: 1.96e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 317 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgqleeee 396
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG------- 136

                         90
                 ....*....|....*.
gi 568384734 397 KFLNAESYYKKALALD 412
Cdd:COG5010  137 QDDEAKAALQRALGTS 152
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 313-418 2.31e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.94  E-value: 2.31e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 313 IGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLvERGGQL 392
Cdd:COG3914  118 LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNAL-QDLGRL 196

                         90       100
                 ....*....|....*....|....*.
gi 568384734 393 EEeekflnAESYYKKALALDETFKDA 418
Cdd:COG3914  197 EE------AIAAYRRALELDPDNADA 216
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
317-412 3.39e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 59.80  E-value: 3.39e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 317 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEdFELALENCPTHRNARKYLCQTLVERGgqleeee 396
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG------- 73

                         90
                 ....*....|....*.
gi 568384734 397 KFLNAESYYKKALALD 412
Cdd:COG3063   74 DYDEALAYLERALELD 89
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 291-412 1.41e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.44  E-value: 1.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 291 EDDFASALRKKQSASWALkcVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALEN 370
Cdd:COG4783   24 EALLEKALELDPDNPEAF--ALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL 101

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 568384734 371 CPTHRNARKYLCQTLVERGgqleeeeKFLNAESYYKKALALD 412
Cdd:COG4783  102 DPEHPEAYLRLARAYRALG-------RPDEAIAALEKALELD 136
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 314-425 2.52e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.67  E-value: 2.52e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 314 GVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLE 393
Cdd:COG2956   15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA-GLLD 93

                         90       100       110
                 ....*....|....*....|....*....|..
gi 568384734 394 EeekflnAESYYKKALALDEtfkDAEDALQKL 425
Cdd:COG2956   94 R------AEELLEKLLELDP---DDAEALRLL 116
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 321-440 1.29e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.16  E-value: 1.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 321 GRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekfln 400
Cdd:COG3914   92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL-GRLEE------ 164

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 568384734 401 AESYYKKALALDETFKDAE----DALQKLHKY------MQKSLELREKQA 440
Cdd:COG3914  165 AIAALRRALELDPDNAEALnnlgNALQDLGRLeeaiaaYRRALELDPDNA 214
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
262-436 6.01e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.85  E-value: 6.01e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 262 VVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRKKQSASWALKCVKI----GVDYFKVGRHVDAMNEYNKALEID 337
Cdd:COG4785   24 ILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLyyerGVAYDSLGDYDLAIADFDQALELD 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 338 KQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLvERGGQLEEeekflnAESYYKKALALD----- 412
Cdd:COG4785  104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL-YYLGRYEL------AIADLEKALELDpndpe 176

                        170       180       190
                 ....*....|....*....|....*....|..
gi 568384734 413 --------ETFKDAEDALQKLHKYMQKSLELR 436
Cdd:COG4785  177 ralwlylaERKLDPEKALALLLEDWATAYLLQ 208
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
314-410 3.84e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.54  E-value: 3.84e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 314 GVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTH--RNARKYLCQTLV----- 386
Cdd:COG4785  114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDpeRALWLYLAERKLdpeka 193

                         90       100       110
                 ....*....|....*....|....*....|
gi 568384734 387 ------ERGGQLEEEEKFLNAESYYKKALA 410
Cdd:COG4785  194 lallleDWATAYLLQGDTEEARELFKLALA 223
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 231-427 7.98e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.38  E-value: 7.98e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 231 LYYRRSVELNSNSLESYENvmqssLGFvnpgvvefLLEKLGIDESnppslmrglqsknfSEDDFASALRKKqsASWALKC 310
Cdd:COG3914   99 ALYRRALALNPDNAEALFN-----LGN--------LLLALGRLEE--------------ALAALRRALALN--PDFAEAY 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 311 VKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGG 390
Cdd:COG3914  150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 568384734 391 qLEEEEKFLNAESYYKKALALDETF------KDAEDALQKLHK 427
Cdd:COG3914  230 -WEVYDRFEELLAALARGPSELSPFallylpDDDPAELLALAR 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
334-440 1.13e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.47  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 334 LEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekflnAESYYKKALALDE 413
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRL-GRYEE------ALADYEQALELDP 73

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 568384734 414 TFKDA----EDALQKLHKY------MQKSLELREKQA 440
Cdd:COG0457   74 DDAEAlnnlGLALQALGRYeealedYDKALELDPDDA 110
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
291-372 5.33e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.16  E-value: 5.33e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 291 EDDFASALRKKQSASWALkcVKIGVDYFKVGRHVDAMnEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALEN 370
Cdd:COG3063   12 EEYYEKALELDPDNADAL--NNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALEL 88


                 ..
gi 568384734 371 CP 372
Cdd:COG3063   89 DP 90
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 325-440 5.73e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 5.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 325 DAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKF------ 398
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLeralal 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 568384734 399 --LNAESYYKKALALDET--FKDAEDALQKLHKYMQKSLELREKQA 440
Cdd:COG4235   81 dpDNPEALYLLGLAAFQQgdYAEAIAAWQKLLALLPADAPARLLEA 126
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
124-207 1.10e-05

Ribosomal protein S1-like RNA-binding domain;


Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 43.75  E-value: 1.10e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734   124 ERGDIVIGRISSIREFGFFmVLICLGsgimrdiahleITALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKL 203
Cdd:smart00316   1 EVGDVVEGTVTEITPGGAF-VDLGNG-----------VEGLIPISEL-SDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRI 67


                   ....
gi 568384734   204 AVSL 207
Cdd:smart00316  68 ILSL 71
TPR_11 pfam13414
TPR repeat;
317-355 3.37e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.30  E-value: 3.37e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 568384734  317 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKG 355
Cdd:pfam13414   4 YYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 291-374 3.45e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 3.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 291 EDDFASALRKKQSASWALkcVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALEN 370
Cdd:COG4783   58 IVLLHEALELDPDEPEAR--LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135


                 ....
gi 568384734 371 CPTH 374
Cdd:COG4783  136 DPDD 139
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 330-411 9.59e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.93  E-value: 9.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 330 YNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHrNARKYLCqtLvergGQLEEEEkflNAESYYKKAL 409
Cdd:cd24142   23 LQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG-GYEKYLY--L----GQLSGGE---EALQYYEKGI 92


                 ..
gi 568384734 410 AL 411
Cdd:cd24142   93 EI 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 329-437 1.36e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 1.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 329 EYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekflnAESYYKKA 408
Cdd:COG5010   42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS-GDKDE------AKEYYEKA 114

                         90       100
                 ....*....|....*....|....*....
gi 568384734 409 LALDETFKDAEDALQKLHKYMQKSLELRE 437
Cdd:COG5010  115 LALSPDNPNAYSNLAALLLSLGQDDEAKA 143
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 313-372 1.53e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 1.53e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 313 IGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCP 372
Cdd:COG5010   94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 339-435 2.32e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 2.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 339 QNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekflnAESYYKKALALDETFKDA 418
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-GDLDE------AIVLLHEALELDPDEPEA 74

                         90       100
                 ....*....|....*....|....*..
gi 568384734 419 E----DALQKLHKY------MQKSLEL 435
Cdd:COG4783   75 RlnlgLALLKAGDYdealalLEKALKL 101
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 283-431 3.37e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 3.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734  283 GLQSKNFSEDDFASALRKKQSASWAlkcvKIGVDYFKV--GRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA 360
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYA----KLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734  361 IEDFELALENCPTHRNARKYLCQTLVERgGQLEEEEKFLNA---------ESYYKKALaLDETFKDAEDALQKLHKYMQK 431
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEA-GEFEEAEKHADAllkkapnspLAHYLKAL-VDFQKKNYEDARETLQDALKS 290
PRK00087 PRK00087
bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;
115-207 8.48e-04

bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;


Pssm-ID: 234623 [Multi-domain]  Cd Length: 647  Bit Score: 42.63  E-value: 8.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 115 RRELFFRDIERGDIVIGRISSIREFGFFMvliclgsgimrDIAHLEitALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIK 194
Cdd:PRK00087 467 KKEETWNSLEEGDVVEGEVKRLTDFGAFV-----------DIGGVD--GLLHVSEI-SWGRVEKPSDVLKVGDEIKVYIL 532

                         90
                 ....*....|...
gi 568384734 195 DIDRYHEKLAVSL 207
Cdd:PRK00087 533 DIDKENKKLSLSL 545
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 183-432 1.75e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.61  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734  183 YQTGDIIRAgikdIDRYHEklAVSLYSSSLPPH--LSGIKLGVISSEELPLYYRRSVELNSNSLESYENVMQSSLGFVNP 260
Cdd:TIGR02917 510 IQEGNPDDA----IQRFEK--VLTIDPKNLRAIlaLAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734  261 GVVEFLLEKlgidesnppslmrglqsknfseddfASALRKKQSASWALKcvkiGVDYFKVGRHVDAMNEYNKALEIDKQN 340
Cdd:TIGR02917 584 KKALAILNE-------------------------AADAAPDSPEAWLML----GRAQLAAGDLNKAVSSFKKLLALQPDS 634

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734  341 VEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVErGGQLEEEEKFLNA-ESYYKKALALDE------ 413
Cdd:TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA-AKRTESAKKIAKSlQKQHPKAALGFElegdly 713

                         250       260
                  ....*....|....*....|
gi 568384734  414 -TFKDAEDALQKLHKYMQKS 432
Cdd:TIGR02917 714 lRQKDYPAAIQAYRKALKRA 733
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 284-381 1.88e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 1.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 284 LQSKNFSE--DDFASALRKKQSASWALKC-VKIGVDYFKVGRHVDAMNEYNKALEIDKQNV---EALVARGALYATKGSL 357
Cdd:COG1729    4 LKAGDYDEaiAAFKAFLKRYPNSPLAPDAlYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDY 83

                         90       100
                 ....*....|....*....|....*..
gi 568384734 358 NKAIEDFELALENCPTH---RNARKYL 381
Cdd:COG1729   84 DKARATLEELIKKYPDSeaaKEARARL 110
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 317-412 2.61e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 2.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 317 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNarkylcqtLVERGGQLEEEE 396
Cdd:COG2956  188 YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL--------LLALADLLERKE 259

                         90
                 ....*....|....*.
gi 568384734 397 KFLNAESYYKKALALD 412
Cdd:COG2956  260 GLEAALALLERQLRRH 275
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
350-437 2.75e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 2.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 350 LYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEEEKFL--------NAESYYKKALALDETfKDAEDA 421
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ-GRYDEAIALEkalkldpnNAEALLNLAELLLEL-GDYDEA 78

                         90
                 ....*....|....*.
gi 568384734 422 LQKLHKYMQKSLELRE 437
Cdd:COG3063   79 LAYLERALELDPSALR 94
RpsA COG0539
Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 ...
 115-207 3.17e-03

Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440305 [Multi-domain]  Cd Length: 348  Bit Score: 40.03  E-value: 3.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734 115 RRELFFRDIERGDIVIGRISSIREFGFFmvlICLGsGI-----MRDIAHleitalcplrdvpSHSNHgdPLSYYQTGDII 189
Cdd:COG0539  179 KREELLEKLEEGDVVEGTVKNITDFGAF---VDLG-GVdgllhISEISW-------------GRVKH--PSEVLKVGDEV 239

                         90
                 ....*....|....*...
gi 568384734 190 RAGIKDIDRYHEKLAVSL 207
Cdd:COG0539  240 EVKVLKIDREKERISLSL 257
TPR_1 pfam00515
Tetratricopeptide repeat;
341-374 3.58e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 3.58e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 568384734  341 VEALVARGALYATKGSLNKAIEDFELALENCPTH 374
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
 242-438 4.55e-03

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 40.42  E-value: 4.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734   242 NSLESYENVMQSSLGFVNPGVveflLEKLGIDESNPPSLMRGLQSKNFseDDFAsalrKKQSASWALKCVKIGVDYF--- 318
Cdd:TIGR01612 1055 NIIDEIEKEIGKNIELLNKEI----LEEAEINITNFNEIKEKLKHYNF--DDFG----KEENIKYADEINKIKDDIKnld 1124

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568384734   319 -KVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYL---CQTLVERGGQLEE 394
Cdd:TIGR01612 1125 qKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIydeIKKLLNEIAEIEK 1204

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 568384734   395 E----EKFLNAESYYKKALA------LDETFKDAEDALQKLHKYMQKSLELREK 438
Cdd:TIGR01612 1205 DktslEEVKGINLSYGKNLGklflekIDEEKKKSEHMIKAMEAYIEDLDEIKEK 1258
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 312-374 5.85e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.77  E-value: 5.85e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568384734  312 KIGVDYFKVGRHVDAMNEYNKALEIDK---QNVEALVARGALYATKGSLNKAIEDFELALENCPTH 374
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPespDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 337-411 6.58e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 6.58e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568384734  337 DKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgqleeeeKFLNAESYYKKALAL 411
Cdd:TIGR02917  18 GDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALG-------DYAAAEKELRKALSL 85
S1_like cd00164
S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of ...
 129-206 9.51e-03

S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.


Pssm-ID: 238094 [Multi-domain]  Cd Length: 65  Bit Score: 35.05  E-value: 9.51e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568384734 129 VIGRISSIREFGFFmvlICLGSGImrdiahleiTALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVS 206
Cdd:cd00164    1 VTGKVVSITKFGVF---VELEDGV---------EGLVHISEL-SDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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