NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|566559965|ref|NP_001274441|]
View 

intraflagellar transport protein 56 isoform 4 [Homo sapiens]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11419012)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Gene Ontology:  GO:0005515
PubMed:  10517866|30708253

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-214 2.66e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 2.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  33 LLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG0457   18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965 113 AGFKASKSRLQNrllfhlahkvvfrggegalqvlpplvdviPEARLNLVIYYLRQDDVQEA---YNLIKDLEPTTPQEYI 189
Cdd:COG0457   98 DYDKALELDPDD-----------------------------AEALYNLGLALLELGRYDEAieaYERALELDPDDADALY 148

                        170       180
                 ....*....|....*....|....*
gi 566559965 190 LKGVVNAALGQEMGSRDHMKIAQQF 214
Cdd:COG0457  149 NLGIALEKLGRYEEALELLEKLEAA 173
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-214 2.66e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 2.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  33 LLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG0457   18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965 113 AGFKASKSRLQNrllfhlahkvvfrggegalqvlpplvdviPEARLNLVIYYLRQDDVQEA---YNLIKDLEPTTPQEYI 189
Cdd:COG0457   98 DYDKALELDPDD-----------------------------AEALYNLGLALLELGRYDEAieaYERALELDPDDADALY 148

                        170       180
                 ....*....|....*....|....*
gi 566559965 190 LKGVVNAALGQEMGSRDHMKIAQQF 214
Cdd:COG0457  149 NLGIALEKLGRYEEALELLEKLEAA 173
TPR_19 pfam14559
Tetratricopeptide repeat;
71-112 2.19e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.41  E-value: 2.19e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 566559965   71 GDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-214 2.66e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 2.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  33 LLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG0457   18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965 113 AGFKASKSRLQNrllfhlahkvvfrggegalqvlpplvdviPEARLNLVIYYLRQDDVQEA---YNLIKDLEPTTPQEYI 189
Cdd:COG0457   98 DYDKALELDPDD-----------------------------AEALYNLGLALLELGRYDEAieaYERALELDPDDADALY 148

                        170       180
                 ....*....|....*....|....*
gi 566559965 190 LKGVVNAALGQEMGSRDHMKIAQQF 214
Cdd:COG0457  149 NLGIALEKLGRYEEALELLEKLEAA 173
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 63-213 1.47e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 1.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  63 IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAagfkasksrlqnrllfhLAHKvvfrggegA 142
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIV-----------------LLHE--------A 64

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 566559965 143 LQVLPPLvdviPEARLNLVIYYLRQDDVQEAYNLIK---DLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQ 213
Cdd:COG4783   65 LELDPDE----PEARLNLGLALLKAGDYDEALALLEkalKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 55-200 5.82e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 5.82e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  55 EEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQN-RLLFHLAHK 133
Cdd:COG2956   40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDaEALRLLAEI 119

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 566559965 134 VVFRG-GEGALQVLPPLVDVIPE---ARLNLVIYYLRQDDVQEAYNLIK---DLEPTTPQEYILKGVVNAALGQ 200
Cdd:COG2956  120 YEQEGdWEKAIEVLERLLKLGPEnahAYCELAELYLEQGDYDEAIEALEkalKLDPDCARALLLLAELYLEQGD 193
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 27-185 1.99e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 1.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  27 IPKLEELLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGM 106
Cdd:COG5010   24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 566559965 107 YKQAEAAGFKASKSRLQNrllfhlahkvvfrggegalqvlpplvdviPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTP 185
Cdd:COG5010  104 KDEAKEYYEKALALSPDN-----------------------------PNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 31-113 4.06e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.26  E-value: 4.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  31 EELLSKRDFTGAITLLEfkRHVGEEEEDTNLW--IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYK 108
Cdd:COG4783   12 QALLLAGDYDEAEALLE--KALELDPDNPEAFalLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89


                 ....*
gi 566559965 109 QAEAA 113
Cdd:COG4783   90 EALAL 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 31-202 6.08e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 6.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  31 EELLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQA 110
Cdd:COG2956   84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965 111 EAAGFKASKSRLQN-RLLFHLAhKVVFRGG--EGALQVLPPLVDVIPE---ARLNLVIYYLRQDDVQEAYNLIKDLEPTT 184
Cdd:COG2956  164 IEALEKALKLDPDCaRALLLLA-ELYLEQGdyEEAIAALERALEQDPDylpALPRLAELYEKLGDPEEALELLRKALELD 242

                        170
                 ....*....|....*...
gi 566559965 185 PQEYILKGVVNAALGQEM 202
Cdd:COG2956  243 PSDDLLLALADLLERKEG 260
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 45-197 6.36e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.30  E-value: 6.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  45 LLEFKRHVGEEEEDTNLWI--GYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAgFKAsksrl 122
Cdd:COG4235    3 IARLRQALAANPNDAEGWLllGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL-LER----- 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 566559965 123 qnrllfhlahkvvfrggegALQVLPPLvdviPEARLNLVIYYLRQDDVQEA---YNLIKDLEPTTPQEYILKGVVNAA 197
Cdd:COG4235   77 -------------------ALALDPDN----PEALYLLGLAAFQQGDYAEAiaaWQKLLALLPADAPARLLEASIAEA 131
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
62-127 6.93e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 6.93e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 566559965  62 WIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQNRLL 127
Cdd:COG0457  115 NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 30-186 7.47e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.98  E-value: 7.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  30 LEELLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQ 109
Cdd:COG3914   85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965 110 AEAAgfkasksrlqnrllfhlahkvvfrgGEGALQVLPPLvdviPEARLNLVIYYLRQDDVQEA---YNLIKDLEPTTPQ 186
Cdd:COG3914  165 AIAA-------------------------LRRALELDPDN----AEALNNLGNALQDLGRLEEAiaaYRRALELDPDNAD 215
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
66-188 1.29e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.54  E-value: 1.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  66 CAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAgfkasksrlqnrllfhlahkvvfrggEGALQV 145
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL--------------------------EKALKL 54

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 566559965 146 LPPLvdviPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEY 188
Cdd:COG3063   55 DPNN----AEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 32-113 6.98e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.20  E-value: 6.98e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  32 ELLSKRDFTGAITLLE--FKRHVGEE-EEDTNLWIGYCAFHLGDYKRALEEYENATK---EENCNSEVWVNLACTYFFLG 105
Cdd:COG1729    2 ALLKAGDYDEAIAAFKafLKRYPNSPlAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELG 81


                 ....*...
gi 566559965 106 MYKQAEAA 113
Cdd:COG1729   82 DYDKARAT 89
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 71-323 7.99e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 7.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  71 GDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQN-RLLFHLAhKVVFRGG--EGALQVLP 147
Cdd:COG2956   22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRaEALLELA-QDYLKAGllDRAEELLE 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965 148 PLVDVIP---EARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKgvvnAALGQEMGSRDHMKIAQQFFQLVGGSASE 224
Cdd:COG2956  101 KLLELDPddaEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLEQGDYDEAIEALEKALKLDPD 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965 225 CdtIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEafLLIQSEKMKNDYIYLSWLA 304
Cdd:COG2956  177 C--ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE--LLRKALELDPSDDLLLALA 252

                        250
                 ....*....|....*....
gi 566559965 305 RCYIMNKKPRLAWELYLKM 323
Cdd:COG2956  253 DLLERKEGLEAALALLERQ 271
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 33-172 1.17e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 41.13  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  33 LLSKRDFTGAITLLEfkRHVGEEEEDTNLWI--GYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQA 110
Cdd:COG3914  122 LLALGRLEEALAALR--RALALNPDFAEAYLnlGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEA 199

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 566559965 111 EAAGFKA-----SKSRLQNRLLFHLAHKVVFRGGEGALQVLPPLVDvIPEARLNLVIYYLRQDDVQE 172
Cdd:COG3914  200 IAAYRRAleldpDNADAHSNLLFALRQACDWEVYDRFEELLAALAR-GPSELSPFALLYLPDDDPAE 265
TPR_19 pfam14559
Tetratricopeptide repeat;
71-112 2.19e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.41  E-value: 2.19e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 566559965   71 GDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
64-113 2.38e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 2.38e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 566559965  64 GYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAA 113
Cdd:COG4785   80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALED 129
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
33-113 7.71e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.53  E-value: 7.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  33 LLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEeYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                 .
gi 566559965 113 A 113
Cdd:COG3063   81 Y 81
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-113 8.11e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 36.71  E-value: 8.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559965  33 LLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG4783   48 LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127


                 .
gi 566559965 113 A 113
Cdd:COG4783  128 A 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH