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Conserved domains on  [gi|557129002|ref|NP_001273388|]
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NEDD4-binding protein 2-like 1 isoform 1 [Homo sapiens]

Protein Classification

ATP-binding protein( domain architecture ID 12153064)

ATP-binding protein with an AAA (ATPases Associated with various cellular Activities) domain may function as an ATPase; similar to NEDD4-binding protein 2-like 1/2 (N4BP2L1 and N4BP2L2), whose functions are not clear

Gene Ontology:  GO:0005524
PubMed:  15037234|18208389

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 44-177 2.52e-19

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


:

Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 81.20  E-value: 2.52e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002   44 LYLLRGLPGSGKTTLARQLqHDFPRALIFSTDDFFFR----EDGAYEFNPDFLEEAHEWNQKRARKAMRNGIsPIIIDNT 119
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRL-LEELGAVRLSSDDERKRlfgeGRPSISYYTDATDRTYERLHELARIALRAGR-PVILDAT 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 557129002  120 NLHAWEMKPYAVMALENNYE---VIFREPDTRWKFNVQELARRNIHG--VSREKIHRMKERYE 177
Cdd:pfam13671  79 NLRRDERARLLALAREYGVPvriVVFEAPEEVLRERLAARARAGGDPsdVPEEVLDRQKARFE 141
 
Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 44-177 2.52e-19

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 81.20  E-value: 2.52e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002   44 LYLLRGLPGSGKTTLARQLqHDFPRALIFSTDDFFFR----EDGAYEFNPDFLEEAHEWNQKRARKAMRNGIsPIIIDNT 119
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRL-LEELGAVRLSSDDERKRlfgeGRPSISYYTDATDRTYERLHELARIALRAGR-PVILDAT 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 557129002  120 NLHAWEMKPYAVMALENNYE---VIFREPDTRWKFNVQELARRNIHG--VSREKIHRMKERYE 177
Cdd:pfam13671  79 NLRRDERARLLALAREYGVPvriVVFEAPEEVLRERLAARARAGGDPsdVPEEVLDRQKARFE 141
COG4639 COG4639
Predicted kinase [General function prediction only];
41-178 3.27e-17

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 75.64  E-value: 3.27e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002  41 RKHLYLLRGLPGSGKTTLARQLqhdFPRALIFSTDDF---FFREDGAYEFNPDFLEEAHEwnqkRARKAMRNGIsPIIID 117
Cdd:COG4639    1 MLSLVVLIGLPGSGKSTFARRL---FAPTEVVSSDDIralLGGDENDQSAWGDVFQLAHE----IARARLRAGR-LTVVD 72

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 557129002 118 NTNLHAWEMKPYAVMALENNYEVIFrepdtrWKFNV--QELARRNI---HGVSREKIHRMKERYEH 178
Cdd:COG4639   73 ATNLQREARRRLLALARAYGALVVA------VVLDVplEVCLARNAardRQVPEEVIRRMLRRLRR 132
pseT PHA02530
polynucleotide kinase; Provisional
 42-178 4.12e-09

polynucleotide kinase; Provisional


Pssm-ID: 222856 [Multi-domain]  Cd Length: 300  Bit Score: 55.80  E-value: 4.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002  42 KHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFF-----REDGAYEFNPDFLEEAHEWNQKRARKAMRNGISpIII 116
Cdd:PHA02530   2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQslfghGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKS-VII 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 557129002 117 DNTNLHAWEMKPYAVMALENNYEviFREPDtrwkFNV--QELARRNIH-GVSREKIHRMKERYEH 178
Cdd:PHA02530  81 SDTNLNPERRRKWKELAKELGAE--FEEKV----FDVpvEELVKRNRKrGERAVPEDVLRSMFKQ 139
NRK1 cd02024
Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide ...
 47-82 1.47e-04

Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.


Pssm-ID: 238982 [Multi-domain]  Cd Length: 187  Bit Score: 41.54  E-value: 1.47e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 557129002  47 LRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFRED 82
Cdd:cd02024    4 ISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPED 39
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 41-118 3.41e-04

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 39.66  E-value: 3.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002    41 RKHLYLLRGLPGSGKTTL----ARQLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAM----RNGIS 112
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLaralARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALalarKLKPD 80


                   ....*.
gi 557129002   113 PIIIDN 118
Cdd:smart00382  81 VLILDE 86
 
Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 44-177 2.52e-19

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 81.20  E-value: 2.52e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002   44 LYLLRGLPGSGKTTLARQLqHDFPRALIFSTDDFFFR----EDGAYEFNPDFLEEAHEWNQKRARKAMRNGIsPIIIDNT 119
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRL-LEELGAVRLSSDDERKRlfgeGRPSISYYTDATDRTYERLHELARIALRAGR-PVILDAT 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 557129002  120 NLHAWEMKPYAVMALENNYE---VIFREPDTRWKFNVQELARRNIHG--VSREKIHRMKERYE 177
Cdd:pfam13671  79 NLRRDERARLLALAREYGVPvriVVFEAPEEVLRERLAARARAGGDPsdVPEEVLDRQKARFE 141
COG4639 COG4639
Predicted kinase [General function prediction only];
41-178 3.27e-17

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 75.64  E-value: 3.27e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002  41 RKHLYLLRGLPGSGKTTLARQLqhdFPRALIFSTDDF---FFREDGAYEFNPDFLEEAHEwnqkRARKAMRNGIsPIIID 117
Cdd:COG4639    1 MLSLVVLIGLPGSGKSTFARRL---FAPTEVVSSDDIralLGGDENDQSAWGDVFQLAHE----IARARLRAGR-LTVVD 72

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 557129002 118 NTNLHAWEMKPYAVMALENNYEVIFrepdtrWKFNV--QELARRNI---HGVSREKIHRMKERYEH 178
Cdd:COG4639   73 ATNLQREARRRLLALARAYGALVVA------VVLDVplEVCLARNAardRQVPEEVIRRMLRRLRR 132
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
44-177 1.90e-09

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 54.92  E-value: 1.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002  44 LYLLRGLPGSGKTTLARQLQHDFPrALIFSTDDF---FFRED-GAYEFNPDFLEEAHEWNQKRARKAMRNGISpIIIDNT 119
Cdd:COG0645    1 LILVCGLPGSGKSTLARALAERLG-AVRLRSDVVrkrLFGAGlAPLERSPEATARTYARLLALARELLAAGRS-VILDAT 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 557129002 120 NLHAWEMKPYAVMALENNYEVIFRE----PDTRWKFNVQELARRNIHGVSREKIHRMKERYE 177
Cdd:COG0645   79 FLRRAQREAFRALAEEAGAPFVLIWldapEEVLRERLEARNAEGGDSDATWEVLERQLAFEE 140
pseT PHA02530
polynucleotide kinase; Provisional
 42-178 4.12e-09

polynucleotide kinase; Provisional


Pssm-ID: 222856 [Multi-domain]  Cd Length: 300  Bit Score: 55.80  E-value: 4.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002  42 KHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFF-----REDGAYEFNPDFLEEAHEWNQKRARKAMRNGISpIII 116
Cdd:PHA02530   2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQslfghGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKS-VII 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 557129002 117 DNTNLHAWEMKPYAVMALENNYEviFREPDtrwkFNV--QELARRNIH-GVSREKIHRMKERYEH 178
Cdd:PHA02530  81 SDTNLNPERRRKWKELAKELGAE--FEEKV----FDVpvEELVKRNRKrGERAVPEDVLRSMFKQ 139
Kti12 COG4088
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ...
 44-124 1.90e-07

tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];


Pssm-ID: 443264 [Multi-domain]  Cd Length: 179  Bit Score: 49.73  E-value: 1.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002  44 LYLLRGLPGSGKTTLARQLQHDFPR----ALIFSTDDffFREDGAYEFNPD-----FLEEAHEwnqKRARKAMRNGISpI 114
Cdd:COG4088    6 LLILTGPPGSGKTTFAKALAQRLYAegiaVALLHSDD--FRRFLVNESFPKetyeeVVEDVRT---TTADNALDNGYS-V 79

                         90
                 ....*....|
gi 557129002 115 IIDNTNLHAW 124
Cdd:COG4088   80 IVDGTFYYRS 89
Zeta_toxin pfam06414
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ...
 41-119 7.29e-05

Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.


Pssm-ID: 428926  Cd Length: 192  Bit Score: 42.35  E-value: 7.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002   41 RKHLYLLRGLPGSGKTTLARQLQHDFPR---ALIFSTDDF--FFRE-DGAYEFNPD-----FLEEAHEWNQKRARKAMRN 109
Cdd:pfam06414  10 RPKAILLGGQPGAGKTELARALLDELGRqgnVVRIDPDDFreLHPHyRELQAADPKtaseyTQPDASRWVEKLLQHAIEN 89

                          90
                  ....*....|
gi 557129002  110 GISpIIIDNT 119
Cdd:pfam06414  90 GYN-IILEGT 98
NRK1 cd02024
Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide ...
 47-82 1.47e-04

Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.


Pssm-ID: 238982 [Multi-domain]  Cd Length: 187  Bit Score: 41.54  E-value: 1.47e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 557129002  47 LRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFRED 82
Cdd:cd02024    4 ISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPED 39
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 41-118 3.41e-04

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 39.66  E-value: 3.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002    41 RKHLYLLRGLPGSGKTTL----ARQLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAM----RNGIS 112
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLaralARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALalarKLKPD 80


                   ....*.
gi 557129002   113 PIIIDN 118
Cdd:smart00382  81 VLILDE 86
KaiC-like_N cd19488
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ...
 41-61 3.45e-04

N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.


Pssm-ID: 410896 [Multi-domain]  Cd Length: 225  Bit Score: 40.80  E-value: 3.45e-04
                         10        20
                 ....*....|....*....|.
gi 557129002  41 RKHLYLLRGLPGSGKTTLARQ 61
Cdd:cd19488   18 PRRLYLVEGAPGTGKTTLALQ 38
COG4185 COG4185
Predicted ABC-type ATPase or kinase [General function prediction only];
41-177 3.56e-04

Predicted ABC-type ATPase or kinase [General function prediction only];


Pssm-ID: 443339  Cd Length: 197  Bit Score: 40.26  E-value: 3.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002  41 RKHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFREDgaYEFNPDF-LEEAHEWNQKRARKAMRNGISpIIIDnT 119
Cdd:COG4185    3 MPRLYIIAGPNGAGKSTFARTILPEELGGLEFVNADLIARGL--SPFNPETaAYEAGRLALERREELLAAGRS-FAFE-T 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 557129002 120 NLHAWEMKPYAVMALENNYEV--IF---REPDTrwkfNVQELARRNIHG---VSREKIHRmkeRYE 177
Cdd:COG4185   79 TLSGPSKLDLIREAKAAGYRVrlIFvglDSPEL----AIARVAQRVAEGghdVPEDKIRR---RYP 137
Udk COG0572
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ...
 49-98 3.64e-04

Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage


Pssm-ID: 440337 [Multi-domain]  Cd Length: 206  Bit Score: 40.21  E-value: 3.64e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 557129002  49 GLPGSGKTTLARQLQHDFP--RALIFSTDDFFF-REDGAYE--FNPDFLE-EAHEW 98
Cdd:COG0572   14 GPSGSGKTTFARRLAEQLGadKVVVISLDDYYKdREHLPLDerGKPNFDHpEAFDL 69
AAA_18 pfam13238
AAA domain;
46-174 6.00e-04

AAA domain;


Pssm-ID: 433052 [Multi-domain]  Cd Length: 128  Bit Score: 38.56  E-value: 6.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002   46 LLRGLPGSGKTTLARQLQhdfpRALIFSTD--DFFFREDGAYEFNPDFLE--EAHEWNQKRARKAMRNGIS-----PIII 116
Cdd:pfam13238   2 LITGTPGVGKTTLAKELS----KRLGFGDNvrDLALENGLVLGDDPETREskRLDEDKLDRLLDLLEENAAleeggNLII 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 557129002  117 DNTNLHawemkPYAVMALENNYEVIFREPDTRWkfnvQELARRnihGVSREKIHRMKE 174
Cdd:pfam13238  78 DGHLAE-----LEPERAKDLVGIVLRASPEELL----ERLEKR---GYEEAKIKENEE 123
PRK06762 PRK06762
hypothetical protein; Provisional
 44-71 2.01e-03

hypothetical protein; Provisional


Pssm-ID: 235858  Cd Length: 166  Bit Score: 37.64  E-value: 2.01e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 557129002  44 LYLLRGLPGSGKTTLARQLQHDFPR--ALI 71
Cdd:PRK06762   4 LIIIRGNSGSGKTTIAKQLQERLGRgtLLV 33
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 45-153 4.85e-03

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 36.36  E-value: 4.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557129002  45 YLLRGLPGSGKTTLAR----QLQHDFPRALIFSTDDFFFREDGAyefnpdFLEEAHEWNQKRARKAMRNGiSPIIIDntn 120
Cdd:cd00009   22 LLLYGPPGTGKTTLARaianELFRPGAPFLYLNASDLLEGLVVA------ELFGHFLVRLLFELAEKAKP-GVLFID--- 91

                         90       100       110
                 ....*....|....*....|....*....|...
gi 557129002 121 lHAWEMKPYAVMALENNYEVIFREPDTRWKFNV 153
Cdd:cd00009   92 -EIDSLSRGAQNALLRVLETLNDLRIDRENVRV 123
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
 41-62 5.72e-03

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 37.07  E-value: 5.72e-03
                         10        20
                 ....*....|....*....|..
gi 557129002  41 RKHLyLLRGLPGSGKTTLARQL 62
Cdd:COG0714   31 GGHL-LLEGVPGVGKTTLAKAL 51
COG1373 COG1373
Predicted ATPase, AAA+ superfamily [General function prediction only];
46-117 9.17e-03

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440984 [Multi-domain]  Cd Length: 405  Bit Score: 36.85  E-value: 9.17e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 557129002  46 LLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFREdgAYEFNPDFLEEAHewnqkrarKAMRNGISPIIID 117
Cdd:COG1373   24 VITGPRQVGKTTLLKQLAKELENILYINLDDPRLRA--LAEEDPDDLLEAL--------KELYPGKTYLFLD 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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