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Conserved domains on  [gi|554790398|ref|NP_001273037|]
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autophagy protein 5 isoform c [Homo sapiens]

Protein Classification

autophagy protein 5( domain architecture ID 10513754)

autophagy protein 5 is involved in autophagic vesicle formation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
APG5 pfam04106
Autophagy protein Apg5; Apg5 is directly required for the import of aminopeptidase I via the ...
 79-189 8.25e-39

Autophagy protein Apg5; Apg5 is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway.


:

Pssm-ID: 461175  Cd Length: 197  Bit Score: 132.32  E-value: 8.25e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554790398   79 WHYPIGLLFDLLA----SSSALPWNITVHFKSFPEKDLLHCP-SKDAIEAHFMSCMKEADALKHKS-QVINEMQKKDHKQ 152
Cdd:pfam04106   1 WHYPIGVLYDLLTaaddSSPSLPWRLTLHFSDYPPDELIPLDaGEESVKDYFMNQLKEADFIRNGSsKRIMSLSKEDSNQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 554790398  153 LWMGLQN-DLTSFgpsignsWNILQKKMDFVISPLEYI 189
Cdd:pfam04106  81 LWDSVLNhDFDQF-------WSINNKLLPTPGESFRHI 111
 
Name Accession Description Interval E-value
APG5 pfam04106
Autophagy protein Apg5; Apg5 is directly required for the import of aminopeptidase I via the ...
 79-189 8.25e-39

Autophagy protein Apg5; Apg5 is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway.


Pssm-ID: 461175  Cd Length: 197  Bit Score: 132.32  E-value: 8.25e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554790398   79 WHYPIGLLFDLLA----SSSALPWNITVHFKSFPEKDLLHCP-SKDAIEAHFMSCMKEADALKHKS-QVINEMQKKDHKQ 152
Cdd:pfam04106   1 WHYPIGVLYDLLTaaddSSPSLPWRLTLHFSDYPPDELIPLDaGEESVKDYFMNQLKEADFIRNGSsKRIMSLSKEDSNQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 554790398  153 LWMGLQN-DLTSFgpsignsWNILQKKMDFVISPLEYI 189
Cdd:pfam04106  81 LWDSVLNhDFDQF-------WSINNKLLPTPGESFRHI 111
 
Name Accession Description Interval E-value
APG5 pfam04106
Autophagy protein Apg5; Apg5 is directly required for the import of aminopeptidase I via the ...
 79-189 8.25e-39

Autophagy protein Apg5; Apg5 is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway.


Pssm-ID: 461175  Cd Length: 197  Bit Score: 132.32  E-value: 8.25e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 554790398   79 WHYPIGLLFDLLA----SSSALPWNITVHFKSFPEKDLLHCP-SKDAIEAHFMSCMKEADALKHKS-QVINEMQKKDHKQ 152
Cdd:pfam04106   1 WHYPIGVLYDLLTaaddSSPSLPWRLTLHFSDYPPDELIPLDaGEESVKDYFMNQLKEADFIRNGSsKRIMSLSKEDSNQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 554790398  153 LWMGLQN-DLTSFgpsignsWNILQKKMDFVISPLEYI 189
Cdd:pfam04106  81 LWDSVLNhDFDQF-------WSINNKLLPTPGESFRHI 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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