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Conserved domains on  [gi|527122116|ref|NP_001268377|]
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recombining binding protein suppressor of hairless-like protein isoform 2 [Homo sapiens]

Protein Classification

LAG1-DNAbind and BTD domain-containing protein( domain architecture ID 10558086)

protein containing domains LAG1-DNAbind, BTD, and IPT

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BTD pfam09270
Beta-trefoil DNA-binding domain; Members of this family of DNA binding domains adopt a ...
 234-359 1.71e-64

Beta-trefoil DNA-binding domain; Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR).


:

Pssm-ID: 462734  Cd Length: 123  Bit Score: 204.10  E-value: 1.71e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122116  234 EDGAFVASARQWAAFTLHL-ADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHK 312
Cdd:pfam09270   1 EGGAFHASSTQWGAFTIHLlDDNQGEQENFTVRDGFICYGSVVKLVCSVTGVALPPLIIRKVDKQQVILDADEPVSQLHK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 527122116  313 CAFQFPGSPPGgggtYLCLATEKVVQFQASPCPKEANRALLNDSSCW 359
Cdd:pfam09270  81 CAFQMKDTERM----YLCLSQEKIIQFQATPCPKDPNREVLNDGACW 123
LAG1-DNAbind pfam09271
LAG1, DNA binding; Members of this family are found in various eukaryotic hypothetical ...
 69-206 1.23e-61

LAG1, DNA binding; Members of this family are found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1. They adopt a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding. This domain is also known as RHR-N (Rel-homology region) as it related to Rel domain proteins.


:

Pssm-ID: 462735  Cd Length: 148  Bit Score: 197.53  E-value: 1.23e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122116   69 VRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVK--------------PGQDQAHQAGETGPTVCGYMG-LDSASGSA 133
Cdd:pfam09271   1 VIILHAKVAQKSYGTEKRFLCPPPCVYLLGPGWKTKstalspdnpltaprVTISISGEDSAEESQCIAWIGmIGSTSDQE 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 527122116  134 TETQKLNFEQQpdsrefGCAKTLYISDAD-KRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPSQKKQSLKNTD 206
Cdd:pfam09271  81 TQQLDLVVWGR------CAAKTLYISDSDeKRKHFELLVKLFAPNGQEIGSFESKPIKVISKPSKKRQSLKNAD 148
IPT super family cl15674
Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as ...
 381-442 1.62e-27

Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.


The actual alignment was detected with superfamily member cd01176:

Pssm-ID: 472823  Cd Length: 97  Bit Score: 105.62  E-value: 1.62e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 527122116 381 PVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRYG-----VEPAVPGVRGAGR 442
Cdd:cd01176    1 PVTPVPVVSSLELNGGGDVAMLELHGENFTPNLKVWFGDVEAETMYRCEesllcVVPDISAFREEWR 67
 
Name Accession Description Interval E-value
BTD pfam09270
Beta-trefoil DNA-binding domain; Members of this family of DNA binding domains adopt a ...
 234-359 1.71e-64

Beta-trefoil DNA-binding domain; Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR).


Pssm-ID: 462734  Cd Length: 123  Bit Score: 204.10  E-value: 1.71e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122116  234 EDGAFVASARQWAAFTLHL-ADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHK 312
Cdd:pfam09270   1 EGGAFHASSTQWGAFTIHLlDDNQGEQENFTVRDGFICYGSVVKLVCSVTGVALPPLIIRKVDKQQVILDADEPVSQLHK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 527122116  313 CAFQFPGSPPGgggtYLCLATEKVVQFQASPCPKEANRALLNDSSCW 359
Cdd:pfam09270  81 CAFQMKDTERM----YLCLSQEKIIQFQATPCPKDPNREVLNDGACW 123
LAG1-DNAbind pfam09271
LAG1, DNA binding; Members of this family are found in various eukaryotic hypothetical ...
 69-206 1.23e-61

LAG1, DNA binding; Members of this family are found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1. They adopt a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding. This domain is also known as RHR-N (Rel-homology region) as it related to Rel domain proteins.


Pssm-ID: 462735  Cd Length: 148  Bit Score: 197.53  E-value: 1.23e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122116   69 VRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVK--------------PGQDQAHQAGETGPTVCGYMG-LDSASGSA 133
Cdd:pfam09271   1 VIILHAKVAQKSYGTEKRFLCPPPCVYLLGPGWKTKstalspdnpltaprVTISISGEDSAEESQCIAWIGmIGSTSDQE 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 527122116  134 TETQKLNFEQQpdsrefGCAKTLYISDAD-KRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPSQKKQSLKNTD 206
Cdd:pfam09271  81 TQQLDLVVWGR------CAAKTLYISDSDeKRKHFELLVKLFAPNGQEIGSFESKPIKVISKPSKKRQSLKNAD 148
IPT_RBP-Jkappa cd01176
IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was ...
 381-442 1.62e-27

IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.


Pssm-ID: 238581  Cd Length: 97  Bit Score: 105.62  E-value: 1.62e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 527122116 381 PVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRYG-----VEPAVPGVRGAGR 442
Cdd:cd01176    1 PVTPVPVVSSLELNGGGDVAMLELHGENFTPNLKVWFGDVEAETMYRCEesllcVVPDISAFREEWR 67
TIG_SUH pfam20144
TIG domain; This entry represents a TIG-like domain found in the suppressor of hairless ...
 386-427 2.92e-17

TIG domain; This entry represents a TIG-like domain found in the suppressor of hairless protein.


Pssm-ID: 466305  Cd Length: 92  Bit Score: 76.48  E-value: 2.92e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 527122116  386 PLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYR 427
Cdd:pfam20144   1 PVVSSLTVNGGGENAMLELHGENFTRDLKVWFGDIKAETEYR 42
 
Name Accession Description Interval E-value
BTD pfam09270
Beta-trefoil DNA-binding domain; Members of this family of DNA binding domains adopt a ...
 234-359 1.71e-64

Beta-trefoil DNA-binding domain; Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR).


Pssm-ID: 462734  Cd Length: 123  Bit Score: 204.10  E-value: 1.71e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122116  234 EDGAFVASARQWAAFTLHL-ADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHK 312
Cdd:pfam09270   1 EGGAFHASSTQWGAFTIHLlDDNQGEQENFTVRDGFICYGSVVKLVCSVTGVALPPLIIRKVDKQQVILDADEPVSQLHK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 527122116  313 CAFQFPGSPPGgggtYLCLATEKVVQFQASPCPKEANRALLNDSSCW 359
Cdd:pfam09270  81 CAFQMKDTERM----YLCLSQEKIIQFQATPCPKDPNREVLNDGACW 123
LAG1-DNAbind pfam09271
LAG1, DNA binding; Members of this family are found in various eukaryotic hypothetical ...
 69-206 1.23e-61

LAG1, DNA binding; Members of this family are found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1. They adopt a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding. This domain is also known as RHR-N (Rel-homology region) as it related to Rel domain proteins.


Pssm-ID: 462735  Cd Length: 148  Bit Score: 197.53  E-value: 1.23e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122116   69 VRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVK--------------PGQDQAHQAGETGPTVCGYMG-LDSASGSA 133
Cdd:pfam09271   1 VIILHAKVAQKSYGTEKRFLCPPPCVYLLGPGWKTKstalspdnpltaprVTISISGEDSAEESQCIAWIGmIGSTSDQE 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 527122116  134 TETQKLNFEQQpdsrefGCAKTLYISDAD-KRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPSQKKQSLKNTD 206
Cdd:pfam09271  81 TQQLDLVVWGR------CAAKTLYISDSDeKRKHFELLVKLFAPNGQEIGSFESKPIKVISKPSKKRQSLKNAD 148
IPT_RBP-Jkappa cd01176
IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was ...
 381-442 1.62e-27

IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.


Pssm-ID: 238581  Cd Length: 97  Bit Score: 105.62  E-value: 1.62e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 527122116 381 PVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRYG-----VEPAVPGVRGAGR 442
Cdd:cd01176    1 PVTPVPVVSSLELNGGGDVAMLELHGENFTPNLKVWFGDVEAETMYRCEesllcVVPDISAFREEWR 67
TIG_SUH pfam20144
TIG domain; This entry represents a TIG-like domain found in the suppressor of hairless ...
 386-427 2.92e-17

TIG domain; This entry represents a TIG-like domain found in the suppressor of hairless protein.


Pssm-ID: 466305  Cd Length: 92  Bit Score: 76.48  E-value: 2.92e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 527122116  386 PLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYR 427
Cdd:pfam20144   1 PVVSSLTVNGGGENAMLELHGENFTRDLKVWFGDIKAETEYR 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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