retrotransposon Gag-like protein 5 [Mus musculus]
List of domain hits
Name | Accession | Description | Interval | E-value | ||
Retrotrans_gag super family | cl46289 | Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a ... |
157-234 | 1.12e-10 | ||
Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved. The actual alignment was detected with superfamily member pfam16297: Pssm-ID: 480629 Cd Length: 112 Bit Score: 59.16 E-value: 1.12e-10
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Name | Accession | Description | Interval | E-value | ||
DUF4939 | pfam16297 | Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around ... |
157-234 | 1.12e-10 | ||
Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various mammalia species. LDOC1, a member of this family and a novel MZF-1-interacting protein, inhibits NF-kappaB activation and relates with cancer and some other diseases. But the specific function of this family is still unknown. Pssm-ID: 465086 Cd Length: 112 Bit Score: 59.16 E-value: 1.12e-10
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Name | Accession | Description | Interval | E-value | |||
DUF4939 | pfam16297 | Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around ... |
157-234 | 1.12e-10 | |||
Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various mammalia species. LDOC1, a member of this family and a novel MZF-1-interacting protein, inhibits NF-kappaB activation and relates with cancer and some other diseases. But the specific function of this family is still unknown. Pssm-ID: 465086 Cd Length: 112 Bit Score: 59.16 E-value: 1.12e-10
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Ty3_capsid | pfam19259 | Ty3 transposon capsid-like protein; This entry corresponds to the capsid protein found in the ... |
151-294 | 1.51e-07 | |||
Ty3 transposon capsid-like protein; This entry corresponds to the capsid protein found in the Ty3 transposons of yeast as well as other transposable elements. Pssm-ID: 437091 [Multi-domain] Cd Length: 197 Bit Score: 52.09 E-value: 1.51e-07
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Retrotrans_gag | pfam03732 | Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a ... |
195-288 | 7.38e-07 | |||
Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved. Pssm-ID: 367628 Cd Length: 97 Bit Score: 47.71 E-value: 7.38e-07
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Blast search parameters | ||||
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