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Conserved domains on  [gi|331284238|ref|NP_001193538|]
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P-selectin glycoprotein ligand 1 isoform 1 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rne super family cl35953
ribonuclease E; Reviewed
 136-295 4.33e-11

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 65.06  E-value: 4.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  136 EIQTTQPAATEAQTTqPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAM 215
Cdd:PRK10811  862 EEVQVQPVVAEVPVA-AAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQ 940

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  216 E-AQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAME-ALSTEPSATEALSMEPT 293
Cdd:PRK10811  941 EvAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVApAQVPEATVEHNHATAPM 1020


                  ..
gi 331284238  294 TK 295
Cdd:PRK10811 1021 TR 1022
 
Name Accession Description Interval E-value
rne PRK10811
ribonuclease E; Reviewed
 136-295 4.33e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 65.06  E-value: 4.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  136 EIQTTQPAATEAQTTqPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAM 215
Cdd:PRK10811  862 EEVQVQPVVAEVPVA-AAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQ 940

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  216 E-AQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAME-ALSTEPSATEALSMEPT 293
Cdd:PRK10811  941 EvAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVApAQVPEATVEHNHATAPM 1020


                  ..
gi 331284238  294 TK 295
Cdd:PRK10811 1021 TR 1022
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 128-257 1.23e-04

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 44.70  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  128 LSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPL--------AATEAQTTPPAATEAQt 199
Cdd:NF033875   36 LATDNVQAAELDTQPGTTTVQPDNPDPQSGSETPKTAVSEEATVQKDTTSQPTKVeevaseknGAEQSSATPNDTTNAQ- 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 331284238  200 tQPTgLEAQTTA---PAAMEAQTTAPAameAQTTPPAAMEAQTTQTTAMEAQTTAPEATEA 257
Cdd:NF033875  115 -QPT-VGAEKSAqeqPVVSPETTNEPL---GQPTEVAPAENEANKSTSIPKEFETPDVDKA 170
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
139-265 1.34e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.80  E-value: 1.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  139 TTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPlAATEAQTTPPAATEAQTTQPTglEAQTTAPAAMEAQ 218
Cdd:pfam05539 185 SHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS-SNPEPQTEPPPSQRGPSGSPQ--HPPSTTSQDQSTT 261

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 331284238  219 TTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTAT 265
Cdd:pfam05539 262 GDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTAT 308
NDFIP2 cd22306
NEDD4 family-interacting protein 2; The NEDD4 (neural precursor cell expressed, ...
 196-286 9.59e-03

NEDD4 family-interacting protein 2; The NEDD4 (neural precursor cell expressed, developmentally down-regulated protein 4)-family interacting proteins (NDFIPs) are adaptor proteins that recruit NEDD4 E3 ligases to specific substrate proteins, which leads to the ubiquitylation and subsequent degradation of these proteins. They also act as activators of the E3 ligase activity by releasing NEDD4 ligase from its auto-inhibitory conformation. NDFIP2 may play a role in protein trafficking.


Pssm-ID: 412070 [Multi-domain]  Cd Length: 229  Bit Score: 37.56  E-value: 9.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 196 EAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTT---APEATEAQTTQPTATEAQTTPL 272
Cdd:cd22306   10 EDDPSESSASEQPSTSTQVQESSSNPAPETDAPPPPYSSITAGATAAPGTETQSEfypVPPPYSVATSLPTYDEAEKAKA 89

                         90
                 ....*....|....
gi 331284238 273 AAMEALSTEPSATE 286
Cdd:cd22306   90 AAMAAAAAEVAQRE 103
 
Name Accession Description Interval E-value
rne PRK10811
ribonuclease E; Reviewed
 136-295 4.33e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 65.06  E-value: 4.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  136 EIQTTQPAATEAQTTqPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAM 215
Cdd:PRK10811  862 EEVQVQPVVAEVPVA-AAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQ 940

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  216 E-AQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAME-ALSTEPSATEALSMEPT 293
Cdd:PRK10811  941 EvAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVApAQVPEATVEHNHATAPM 1020


                  ..
gi 331284238  294 TK 295
Cdd:PRK10811 1021 TR 1022
rne PRK10811
ribonuclease E; Reviewed
 136-293 2.17e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 62.75  E-value: 2.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  136 EIQTTQPAATEAQTTQPVPTEAQTTPLA-ATEAQTTRLTATEAQTTPLAATEAQttPPAATEAQTTQPTGLEAQTTAPAA 214
Cdd:PRK10811  852 DVQVEEQREAEEVQVQPVVAEVPVAAAVePVVSAPVVEAVAEVVEEPVVVAEPQ--PEEVVVVETTHPEVIAAPVTEQPQ 929

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  215 MEAQTTAPAAME--AQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEP 292
Cdd:PRK10811  930 VITESDVAVAQEvaEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009


                  .
gi 331284238  293 T 293
Cdd:PRK10811 1010 T 1010
rne PRK10811
ribonuclease E; Reviewed
 140-314 2.43e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 62.75  E-value: 2.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  140 TQPAATEAQTtQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTglEAQTTAPAAMEAQT 219
Cdd:PRK10811  848 VRPQDVQVEE-QREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVV--VVETTHPEVIAAPV 924

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  220 TA-PAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRGL 298
Cdd:PRK10811  925 TEqPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004

                         170
                  ....*....|....*.
gi 331284238  299 FIPFSVSSVTHKGIPM 314
Cdd:PRK10811 1005 QVPEATVEHNHATAPM 1020
PRK10856 PRK10856
cytoskeleton protein RodZ;
172-278 4.99e-08

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 54.26  E-value: 4.99e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 172 LTATEAQTTPLaaTEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAameaQTTQTTAMEAQTTA 251
Cdd:PRK10856 154 LSQNSGQSVPL--DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS----QANVDTAATPAPAA 227

                         90       100
                 ....*....|....*....|....*..
gi 331284238 252 PEATEAQTTQPTATEAQTTPLAAMEAL 278
Cdd:PRK10856 228 PATPDGAAPLPTDQAGVSTPAADPNAL 254
rne PRK10811
ribonuclease E; Reviewed
 152-294 2.17e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 53.50  E-value: 2.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  152 PVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQ-PTGLEAQTTAPAAMEAQTTAPAAMEAQ-T 229
Cdd:PRK10811  846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVeEPVVVAEPQPEEVVVVETTHPEVIAAPvT 925

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 331284238  230 TPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTT 294
Cdd:PRK10811  926 EQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAE 990
PRK10856 PRK10856
cytoskeleton protein RodZ;
121-234 3.49e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 51.57  E-value: 3.49e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 121 ELANMGNLStdSAAMEIQTTQPAATEAQTTQPVPTeaQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATeAQTT 200
Cdd:PRK10856 142 EITTMADQS--SAELSQNSGQSVPLDTSTTTDPAT--TPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAP-SQAN 216

                         90       100       110
                 ....*....|....*....|....*....|....
gi 331284238 201 QPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAA 234
Cdd:PRK10856 217 VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAAD 250
PRK10856 PRK10856
cytoskeleton protein RodZ;
182-290 7.08e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.80  E-value: 7.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 182 LAATEAQTTPPAATEAQTTQPTglEAQTTAPAAMEAQTTAPAAmeaQTTPPAAMEAQTTQTTAMeAQTTAPEATEAQTTQ 261
Cdd:PRK10856 154 LSQNSGQSVPLDTSTTTDPATT--PAPAAPVDTTPTNSQTPAV---ATAPAPAVDPQQNAVVAP-SQANVDTAATPAPAA 227

                         90       100
                 ....*....|....*....|....*....
gi 331284238 262 PTATEAQTTPLAAMEALSTEPSATEALSM 290
Cdd:PRK10856 228 PATPDGAAPLPTDQAGVSTPAADPNALVM 256
rne PRK10811
ribonuclease E; Reviewed
 72-252 1.33e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 50.81  E-value: 1.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238   72 ETEPPEMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTTElanmgnlstdSAAMEIQTTQPAATEAQ-TT 150
Cdd:PRK10811  857 EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQP----------EEVVVVETTHPEVIAAPvTE 926

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  151 QPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTtqptgleaqTTAPAAMEAQTTAPAAMEAQTT 230
Cdd:PRK10811  927 QPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEV---------VAQPAAPVVAEVAAEVETVTAV 997

                         170       180
                  ....*....|....*....|..
gi 331284238  231 PPAAMEAQTTQTTAMEAQTTAP 252
Cdd:PRK10811  998 EPEVAPAQVPEATVEHNHATAP 1019
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 182-285 1.45e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 50.66  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  182 LAATEAQTTPPAATEAQTTQPTgleAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQ 261
Cdd:PRK12270   33 FADYGPGSTAAPTAAAAAAAAA---ASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109

                          90       100       110
                  ....*....|....*....|....*....|..
gi 331284238  262 PTATEAQTTPL---AA-----MEALSTEPSAT 285
Cdd:PRK12270  110 AAAVEDEVTPLrgaAAavaknMDASLEVPTAT 141
rne PRK10811
ribonuclease E; Reviewed
 133-264 1.91e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 50.42  E-value: 1.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  133 AAMEIQTTQPAATEAqtTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAP 212
Cdd:PRK10811  881 PVVSAPVVEAVAEVV--EEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETAD 958

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 331284238  213 AAMEAQTTAPAAMEAQT-TPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTA 264
Cdd:PRK10811  959 IEEAAETAEVVVAEPEVvAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATV 1011
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 142-293 2.14e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 2.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 142 PAATEAQTTQPVpteAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTA 221
Cdd:PRK07994 361 PAAPLPEPEVPP---QSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 331284238 222 PAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPT 293
Cdd:PRK07994 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKT 509
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 151-255 4.24e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.12  E-value: 4.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  151 QPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQ--TTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQ 228
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPpaAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116

                          90       100       110
                  ....*....|....*....|....*....|
gi 331284238  229 TTP---PAAMEAQTtqttaMEAQTTAPEAT 255
Cdd:PRK12270  117 VTPlrgAAAAVAKN-----MDASLEVPTAT 141
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
77-291 5.42e-06

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 48.45  E-value: 5.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  77 EMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTTELANmgnlSTDSAAMEIQTTQPAATEAQTTQPVPTE 156
Cdd:PRK12727  56 ETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVAS----AAEDMIAAMALRQPVSVPRQAPAAAPVR 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 157 AQTTPLAATEAQttrltateaqttplAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAME 236
Cdd:PRK12727 132 AASIPSPAAQAL--------------AHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAA 197

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 331284238 237 AqtTQTTAMEAQTTAPEATEAQTTQPTATeAQTTPLAAMEALSTEPSATEALSME 291
Cdd:PRK12727 198 A--LAAHAAYAQDDDEQLDDDGFDLDDAL-PQILPPAALPPIVVAPAAPAALAAV 249
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 138-284 6.65e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 48.32  E-value: 6.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 138 QTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEA 217
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 331284238 218 QTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQ--TTPLAAMEALSTEPSA 284
Cdd:PRK07994 442 EPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEpvATPKALKKALEHEKTP 510
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 164-297 1.28e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.67  E-value: 1.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 164 ATEAQTTRLTATE--AQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQ 241
Cdd:PRK07764 370 DERGLLARLERLErrLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 331284238 242 TTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRG 297
Cdd:PRK07764 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 173-275 1.34e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.58  E-value: 1.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  173 TATEAQTTPlAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTT-- 250
Cdd:PRK12270   42 AAPTAAAAA-AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTpl 120

                          90       100       110
                  ....*....|....*....|....*....|.
gi 331284238  251 --APEAT----EAQTTQPTATEAQTTPLAAM 275
Cdd:PRK12270  121 rgAAAAVaknmDASLEVPTATSVRAVPAKLL 151
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
157-269 2.50e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 46.77  E-value: 2.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 157 AQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTgleaqTTAPAAMEAQTTAPAAMEAQTTPPAAME 236
Cdd:PRK11907  12 ALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADN-----TETPVAATTAAEAPSSSETAETSDPTSE 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 331284238 237 AQTTqttameAQTTAPEATEAQTTQPTATEAQT 269
Cdd:PRK11907  87 ATDT------TTSEARTVTPAATETSKPVEGQT 113
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 132-244 3.17e-05

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 46.26  E-value: 3.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 132 SAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATE--AQTTRLTATEAQTTPLAATEAQTTPP----AATEAQTTQPTGL 205
Cdd:PHA03269  34 SAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPdlAQAPTPAASEKFDPAPAPHQAASRAPdpavAPQLAAAPKPDAA 113

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 331284238 206 EAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTA 244
Cdd:PHA03269 114 EAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 175-291 6.95e-05

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 45.10  E-value: 6.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 175 TEAQTTPLAATEAQTTP--------PAATEAQTTQPTGLEAQTTA------------PAAMEAQTTAPAAMEAQTTPP-- 232
Cdd:PHA03269  19 IANLNTNIPIPELHTSAatqkpdpaPAPHQAASRAPDPAVAPTSAasrkpdlaqaptPAASEKFDPAPAPHQAASRAPdp 98

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 331284238 233 --AAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATeAQTTPLAAMEALSTEPSATEALSME 291
Cdd:PHA03269  99 avAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSA-ASKKPDPAAHTQHSPPPFAYTRSME 158
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 158-287 7.80e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 45.08  E-value: 7.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 158 QTTPLAATEAQTTRLTATEAQTTPLAATEAQTTP---PAA----TEAQTTQPTGLEAQTTAP----AAMEAQTTAPAAME 226
Cdd:PRK08691 373 ENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPvqtASAaampSEGKTAGPVSNQENNDVPpwedAPDEAQTAAGTAQT 452

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 331284238 227 AQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQ-PTATEAQTTPLAamEALSTEPSATEA 287
Cdd:PRK08691 453 SAKSIQTASEAETPPENQVSKNKAADNETDAPLSEvPSENPIQATPND--EAVETETFAHEA 512
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
116-271 8.16e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.77  E-value: 8.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 116 TELTteLANMGNLSTDSaameiQTTQPAATEAQTTQPVPTEaqttPLAATEAQTTrlTATEAQTTPLAATEAQTTPPAAT 195
Cdd:PRK14971 352 VELT--LIQLAQLTQKG-----DDASGGRGPKQHIKPVFTQ----PAAAPQPSAA--AAASPSPSQSSAAAQPSAPQSAT 418

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 331284238 196 EAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTP 271
Cdd:PRK14971 419 QPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQK 494
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 129-284 1.08e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.47  E-value: 1.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 129 STDSAAMEIQTTQPAAT-EAQTTQPVPTEAQTTPLAATEAQTTRLTATEaqttpLAATEAQTTPPAATEAQTTQPTGLEA 207
Cdd:PRK07994 374 SAAPAASAQATAAPTAAvAPPQAPAVPPPPASAPQQAPAVPLPETTSQL-----LAARQQLQRAQGATKAKKSEPAAASR 448

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 331284238 208 QTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSA 284
Cdd:PRK07994 449 ARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERDP 525
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 128-257 1.23e-04

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 44.70  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  128 LSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPL--------AATEAQTTPPAATEAQt 199
Cdd:NF033875   36 LATDNVQAAELDTQPGTTTVQPDNPDPQSGSETPKTAVSEEATVQKDTTSQPTKVeevaseknGAEQSSATPNDTTNAQ- 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 331284238  200 tQPTgLEAQTTA---PAAMEAQTTAPAameAQTTPPAAMEAQTTQTTAMEAQTTAPEATEA 257
Cdd:NF033875  115 -QPT-VGAEKSAqeqPVVSPETTNEPL---GQPTEVAPAENEANKSTSIPKEFETPDVDKA 170
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 142-254 1.63e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 1.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 142 PAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTA 221
Cdd:PRK07764 392 GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

                         90       100       110
                 ....*....|....*....|....*....|...
gi 331284238 222 PAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEA 254
Cdd:PRK07764 472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 142-278 1.64e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 1.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 142 PAATEAQTTQPVPTEAQTtPLAATEAQTTrlTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTA 221
Cdd:PRK14951 371 EAAAPAEKKTPARPEAAA-PAAAPVAQAA--AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 331284238 222 PAAMEAQTTP-----PAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTP-LAAMEAL 278
Cdd:PRK14951 448 APAPPAQAAPetvaiPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQqLAAAEAI 510
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
87-278 1.84e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.68  E-value: 1.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  87 PLTGPGTPESTTVEPAARRSTGldAGGAVTELTTELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATE 166
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVP--APGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATAD 437

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 167 AQTTRLTATEAQTTPL---AATEAQTTPPAATEAQTTQPTGLEAQTTAPAAM-EAQTTAPAAMEAQTTPPAAMEAQTTQT 242
Cdd:PRK07003 438 RGDDAADGDAPVPAKAnarASADSRCDERDAQPPADSGSASAPASDAPPDAAfEPAPRAAAPSAATPAAVPDARAPAAAS 517

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 331284238 243 TAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEAL 278
Cdd:PRK07003 518 REDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAL 553
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 97-282 2.00e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 2.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  97 TTVEPA-ARRSTGLDAGGAVTELTTELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPteAQTTPL------------- 162
Cdd:PRK14951 268 TVVETAdELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVARLAALMP--ADETQLlysiclhgraelg 345

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 163 ------AATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGlEAQTTAPAAMEAqtTAPAAMEAQTTPPAAME 236
Cdd:PRK14951 346 lapdeyAALTMVLLRLLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAP-VAQAAAAPAPAA--APAAAASAPAAPPAAAP 422

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 331284238 237 AQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEP 282
Cdd:PRK14951 423 PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP 468
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 144-272 2.16e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 2.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 144 ATEAQTTQPVPTEAQTTPLAATeaqttrlTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPA 223
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAA-------PAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 331284238 224 AMEAQTTPPAAMEAQTTQTTAMEAQTTAPE-----ATEAQTTQPTATEAQTTPL 272
Cdd:PRK14951 440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEpavasAAPAPAAAPAAARLTPTEE 493
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
133-247 2.60e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 2.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 133 AAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQttpPAATEAQTTQPTGLEAQTTAP 212
Cdd:PRK12323 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL---AAARQASARGPGGAPAPAPAP 454

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 331284238 213 AAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEA 247
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAP 489
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
89-246 3.06e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 42.81  E-value: 3.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  89 TGPGTPESTTVEPAARRSTGLDAggaVTELTTELANMGNLSTDSaameIQTTQPAATEAQTTQPVPTEAQTTPLAATEA- 167
Cdd:PRK13335  18 TGAITVTTQSVKAEKIQSTKVDK---VPTLKAERLAMINITAGA----NSATTQAANTRQERTPKLEKAPNTNEEKTSAs 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 168 ---QTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTgleAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTA 244
Cdd:PRK13335  91 kieKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPK---TKVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQTDMTPK 167


                 ..
gi 331284238 245 ME 246
Cdd:PRK13335 168 YE 169
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
141-292 3.26e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 3.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 141 QPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAqTTAPAAMEAQTT 220
Cdd:PRK07003 372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR-GDDAADGDAPVP 450

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 331284238 221 APAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEP 292
Cdd:PRK07003 451 AKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522
PRK10856 PRK10856
cytoskeleton protein RodZ;
106-197 4.50e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 41.94  E-value: 4.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 106 STGLDAGGAVTELTTE--LANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPTeAQTTPLAATEAQTTRLTATEAQTTPLA 183
Cdd:PRK10856 161 SVPLDTSTTTDPATTPapAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAP-SQANVDTAATPAPAAPATPDGAAPLPT 239

                         90
                 ....*....|....
gi 331284238 184 ATEAQTTPPAATEA 197
Cdd:PRK10856 240 DQAGVSTPAADPNA 253
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
139-229 5.04e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 42.53  E-value: 5.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 139 TTQPAATEAQTTQPVPTeaqtTPLAATEAQTTRLTATEAQT---TPLAATEAQTTPPAATEAQTTQPTGLEAQTT---AP 212
Cdd:PRK11907  21 SNPKLAQAEEIVTTTPA----TSTEAEQTTPVESDATEEADnteTPVAATTAAEAPSSSETAETSDPTSEATDTTtseAR 96

                         90
                 ....*....|....*..
gi 331284238 213 AAMEAQTTAPAAMEAQT 229
Cdd:PRK11907  97 TVTPAATETSKPVEGQT 113
PRK10856 PRK10856
cytoskeleton protein RodZ;
118-200 8.90e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 41.17  E-value: 8.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 118 LTTELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEA 197
Cdd:PRK10856 164 LDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAG 243


                 ...
gi 331284238 198 QTT 200
Cdd:PRK10856 244 VST 246
PHA03247 PHA03247
large tegument protein UL36; Provisional
 71-292 1.26e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238   71 PETEPPEMLRNS-TDTTPLTGPGTPESTTVEPAARRS-TGLDAGGAVTELTTELANMGNLSTDSAAMEIQTTQPAAT--- 145
Cdd:PHA03247 2708 PEPAPHALVSATpLPPGPAAARQASPALPAAPAPPAVpAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTrpa 2787

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  146 -----EAQTTQPVPTEAQTTPLAAT-EAQTTRLTATEAQTTPLAATEAQTTPPAATE-AQTTQPTGLEAQTTAPAAMEAQ 218
Cdd:PHA03247 2788 vaslsESRESLPSPWDPADPPAAVLaPAAALPPAASPAGPLPPPTSAQPTAPPPPPGpPPPSLPLGGSVAPGGDVRRRPP 2867

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 331284238  219 TTAPAAMEA-QTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEP 292
Cdd:PHA03247 2868 SRSPAAKPAaPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
151-287 1.29e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 151 QPVPTEAQTTPlaATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMeaqTTAPAAMeaqtt 230
Cdd:PRK12323 364 RPGQSGGGAGP--ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR---SPAPEAL----- 433

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 331284238 231 pPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEA 287
Cdd:PRK12323 434 -AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAP 489
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
139-265 1.34e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.80  E-value: 1.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  139 TTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPlAATEAQTTPPAATEAQTTQPTglEAQTTAPAAMEAQ 218
Cdd:pfam05539 185 SHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS-SNPEPQTEPPPSQRGPSGSPQ--HPPSTTSQDQSTT 261

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 331284238  219 TTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTAT 265
Cdd:pfam05539 262 GDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTAT 308
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 165-293 1.35e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 40.87  E-value: 1.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 165 TEAQTTRLTATEAQTTplAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAME--AQTTAPAAMEAQTTPPAAMEAQTTQT 242
Cdd:PHA03269  19 IANLNTNIPIPELHTS--AATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPdlAQAPTPAASEKFDPAPAPHQAASRAP 96

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 331284238 243 TAMEAQTTA----PEATEAQTTQPTATEAQT-TPLAAMEALSTePSATEALSMEPT 293
Cdd:PHA03269  97 DPAVAPQLAaapkPDAAEAFTSAAQAHEAPAdAGTSAASKKPD-PAAHTQHSPPPF 151
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
78-267 1.36e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 1.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  78 MLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTTELANMGnlstdSAAMEIQTTQPAATEAQTTQPVPTEA 157
Cdd:PRK07003 355 MLAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVT-----GAAGAALAPKAAAAAAATRAEAPPAA 429

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 158 QTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQP-TGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAME 236
Cdd:PRK07003 430 PAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSgSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPD 509

                        170       180       190
                 ....*....|....*....|....*....|.
gi 331284238 237 AQTTQTTAMEAQTTAPEATEAQTTQPTATEA 267
Cdd:PRK07003 510 ARAPAAASREDAPAAAAPPAPEARPPTPAAA 540
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 142-234 3.10e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 3.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 142 PAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQT-T 220
Cdd:PRK07764 412 PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPApA 491

                         90
                 ....*....|....
gi 331284238 221 APAAMEAQTTPPAA 234
Cdd:PRK07764 492 AAPAAPAAPAAPAG 505
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 131-296 3.44e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 39.58  E-value: 3.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 131 DSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATE-AQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGlEAQT 209
Cdd:PRK13108 293 DEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDvAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETS-EADI 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 210 TAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALS 289
Cdd:PRK13108 372 EREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQD 451


                 ....*..
gi 331284238 290 MEPTTKR 296
Cdd:PRK13108 452 DFSSRRR 458
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
144-257 4.05e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.47  E-value: 4.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 144 ATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAA-TEAQTTQPTGLEAQTTAPAAMEAQTTAP 222
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAPAPAP 454

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 331284238 223 AAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEA 257
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAP 489
PHA03378 PHA03378
EBNA-3B; Provisional
 141-274 4.11e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.67  E-value: 4.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 141 QPAATEAQTTQPV---PTEAQTTPLAATEAQTTRLTATEAQttPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEA 217
Cdd:PHA03378 675 QPSPTGANTMLPIqwaPGTMQPPPRAPTPMRPPAAPPGRAQ--RPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPG 752

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 331284238 218 QTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTA---PEATEAQTTQPTA--TEAQTTPLAA 274
Cdd:PHA03378 753 RARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPqqrPRGAPTPQPPPQAgpTSMQLMPRAA 814
PRK13914 PRK13914
invasion associated endopeptidase;
120-267 4.11e-03

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 39.40  E-value: 4.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 120 TELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVP-TEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQT--------- 189
Cdd:PRK13914 131 TGFVNGKYLTDKVTSTPVAPTQEVKKETTTQQAAPaAETKTEVKQTTQATTPAPKVAETKETPVVDQNATThavksgdti 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 190 -----------------TPPAATEAQTTQPTGLE--AQTTAPAAmEAQTTAPAAmEAQTTPPAAMEAQTTQTTAMEAQTT 250
Cdd:PRK13914 211 walsvkygvsvqdimswNNLSSSSIYVGQKLAIKqtANTATPKA-EVKTEAPAA-EKQAAPVVKENTNTNTATTEKKETT 288

                        170
                 ....*....|....*..
gi 331284238 251 apeaTEAQTTQPTATEA 267
Cdd:PRK13914 289 ----TQQQTAPKAPTEA 301
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 138-287 4.16e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 4.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 138 QTTQPAATEA--QTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAM 215
Cdd:PRK07764 611 EAARPAAPAApaAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAP 690

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 331284238 216 EAQTTAPAAMEAQTTPPAAMEAQ-----TTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEA 287
Cdd:PRK07764 691 AAPAGAAPAQPAPAPAATPPAGQaddpaAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPA 767
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
171-282 4.80e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 39.45  E-value: 4.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 171 RLTATEAQTTPLAATEAQTTPPAATEAQTTQP-TGLEAQTTAPAAMEAQTTAPAAmeaqTTPPAAmeaqttqTTAMEAqT 249
Cdd:PRK11907   5 YFSKSAVALTLALLTASNPKLAQAEEIVTTTPaTSTEAEQTTPVESDATEEADNT----ETPVAA-------TTAAEA-P 72

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 331284238 250 TAPEATEAQTTQPTATEA--QTTPLAAMEALSTEP 282
Cdd:PRK11907  73 SSSETAETSDPTSEATDTttSEARTVTPAATETSK 107
motB PRK05996
MotB family protein;
152-266 5.70e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 38.91  E-value: 5.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 152 PVPTEAQTTPLAATEAQTTrltATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTP 231
Cdd:PRK05996 191 EVTTAGDLLPPGQAREQAQ---GAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAKAAKPEPMP 267

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 331284238 232 PAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATE 266
Cdd:PRK05996 268 DDQQKEAEQLQAAIAQAIGGVAGKLAEGVTVTPVE 302
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 138-251 5.73e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.20  E-value: 5.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 138 QTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEA 217
Cdd:PRK07764 398 APSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPT 477

                         90       100       110
                 ....*....|....*....|....*....|....
gi 331284238 218 QTTAPAAMEAQttPPAAMEAQTTQTTAMEAQTTA 251
Cdd:PRK07764 478 AAPAPAPPAAP--APAAAPAAPAAPAAPAGADDA 509
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 142-287 8.23e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 8.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 142 PAA--TEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQT 219
Cdd:PRK07764 365 PSAsdDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 331284238 220 TAPAAMEAQTTPPAAMEAQTTQTTameAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEA 287
Cdd:PRK07764 445 AGNAPAGGAPSPPPAAAPSAQPAP---APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 141-292 8.98e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 8.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 141 QPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAqTT 220
Cdd:PRK07764 607 GPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP-AP 685

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 331284238 221 APAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMeaLSTEPSATEALSMEP 292
Cdd:PRK07764 686 APAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP--LPPEPDDPPDPAGAP 755
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 143-292 9.17e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 38.53  E-value: 9.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238  143 AATEAQTTQPVPTEA--QTTPLAATEAQTTRLTaTEAQTTPLAAT-EAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQT 219
Cdd:PRK10263  325 AATTATQSWAAPVEPvtQTPPVASVDVPPAQPT-VAWQPVPGPQTgEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQP 403

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 331284238  220 TAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTT-----PLAAMEALSTEPSATEALSMEP 292
Cdd:PRK10263  404 QQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQStfapqSTYQTEQTYQQPAAQEPLYQQP 481
NDFIP2 cd22306
NEDD4 family-interacting protein 2; The NEDD4 (neural precursor cell expressed, ...
 196-286 9.59e-03

NEDD4 family-interacting protein 2; The NEDD4 (neural precursor cell expressed, developmentally down-regulated protein 4)-family interacting proteins (NDFIPs) are adaptor proteins that recruit NEDD4 E3 ligases to specific substrate proteins, which leads to the ubiquitylation and subsequent degradation of these proteins. They also act as activators of the E3 ligase activity by releasing NEDD4 ligase from its auto-inhibitory conformation. NDFIP2 may play a role in protein trafficking.


Pssm-ID: 412070 [Multi-domain]  Cd Length: 229  Bit Score: 37.56  E-value: 9.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 196 EAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTT---APEATEAQTTQPTATEAQTTPL 272
Cdd:cd22306   10 EDDPSESSASEQPSTSTQVQESSSNPAPETDAPPPPYSSITAGATAAPGTETQSEfypVPPPYSVATSLPTYDEAEKAKA 89

                         90
                 ....*....|....
gi 331284238 273 AAMEALSTEPSATE 286
Cdd:cd22306   90 AAMAAAAAEVAQRE 103
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 138-273 9.69e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 38.55  E-value: 9.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284238 138 QTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPP-----AATEAQTTQPTGLEAQTTAP 212
Cdd:PRK14949 657 LSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPweeapEVASANDGPNNAAEGNLSES 736

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 331284238 213 AAMEAQTTApAAMEAQTTPPAAMEAqttqttamEAQTTAPEATEAQTTQPTATEAQTTPLA 273
Cdd:PRK14949 737 VEDASNSEL-QAVEQQATHQPQVQA--------EAQSPASTTALTQTSSEVQDTELNLVLL 788
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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