|
Name |
Accession |
Description |
Interval |
E-value |
| CASP_C |
pfam08172 |
CASP C terminal; This domain is the C-terminal region of the CASP family of proteins. It is a ... |
377-597 |
5.09e-67 |
|
CASP C terminal; This domain is the C-terminal region of the CASP family of proteins. It is a Golgi membrane protein which is thought to have a role in vesicle transport.
Pssm-ID: 462392 [Multi-domain] Cd Length: 247 Bit Score: 219.08 E-value: 5.09e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 377 ELQVRITEAVATATEQRELIARLEQDLSIIQSIQR--PDAEGAAEHRLEKIPEPIKEATAlfyGPAA-----PASGALPE 449
Cdd:pfam08172 1 TLQEELSSLNAELEEQQELNAKLENDLLKVQDEASnaFSFNDASSAGSGVSRYPPSGGRR---SPTSsiisgFEPSESSS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 450 GQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTEL------ 523
Cdd:pfam08172 78 SSDSSILPIVTSQRDRFRQRNAELEEELRKQFETISSLRQEIASLQKDNLKLYEKTRYLQSYNRGGGGGTKSSSstsssa 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 524 ----------------RYSSQYEERLDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVF 587
Cdd:pfam08172 158 saygnnpnpsdvealdKYRKAYEESLNPFAAFRGRESERAYKRLSPLERLVLSLTRLVLANRTSRNLFFFYCLALHLLVF 237
|
250
....*....|
gi 321400114 588 LVLYKLAWSE 597
Cdd:pfam08172 238 FTLYYVSNSS 247
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
18-496 |
4.85e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 4.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 18 QQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPL---LKSFQGEIDALSKRSKEAEAAFLNVYK 94
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELeaeLEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 95 RLIDVpEVTIKALKEKIREYEQTLKNQAETIALEKEQklQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 174
Cdd:COG1196 296 ELARL-EQDIARLEERRRELEERLEELEEELAELEEE--LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 175 ELFDLKTKYDEETTAKADEIEMImTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE 254
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAA-AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 255 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG------QADYEEVKKELNILKS 328
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkaallLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 329 MEFAPSEGAGT-------------QDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQREL 395
Cdd:COG1196 532 VEAAYEAALEAalaaalqnivvedDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 396 IARLEQDLSIIQSIQR-PDAEGAAEHRLEKIPEPIKEATAlfYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELE 474
Cdd:COG1196 612 DARYYVLGDTLLGRTLvAARLEAALRRAVTLAGRLREVTL--EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
490 500
....*....|....*....|..
gi 321400114 475 AENRLAQHTLQALQSELDSLRA 496
Cdd:COG1196 690 EEELELEEALLAEEEEERELAE 711
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
18-322 |
4.36e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 4.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 18 QQLQREL-DATATVLANRQDESEQSRKRLIEQSrefkkntpEDLRKQvaplLKSFQGEIDALSKRSKEAEAAFLNVYKRL 96
Cdd:TIGR02169 214 QALLKEKrEYEGYELLKEKEALERQKEAIERQL--------ASLEEE----LEKLTEEISELEKRLEEIEQLLEELNKKI 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 97 IDVPEVTIKALKEKIREYEQTLKNQAETIAlEKEQKLQnDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTEL 176
Cdd:TIGR02169 282 KDLGEEEQLRVKEKIGELEAEIASLERSIA-EKERELE-DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 177 FDLKTKYD--------EETTAKA--DEIEMIMTDLERANQRAEVAQREAETLREQLSSAnhSLQLASQIQKAPDVEQAIE 246
Cdd:TIGR02169 360 AELKEELEdlraeleeVDKEFAEtrDELKDYREKLEKLKREINELKRELDRLQEELQRL--SEELADLNAAIAGIEAKIN 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 247 VL--TRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSA---SQISQLEQQLSAKNSTLKQLEEKLKGQADYEEVKK 321
Cdd:TIGR02169 438 ELeeEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDrveKELSKLQRELAEAEAQARASEERVRGGRAVEEVLK 517
|
.
gi 321400114 322 E 322
Cdd:TIGR02169 518 A 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
16-497 |
1.39e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 16 DLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAplLKSFQGEIDALSKRSKEAEAAFLNVYKR 95
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE--LAEAEEALLEAEAELAEAEEELEELAEE 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 96 LIDvPEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNdfAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTE 175
Cdd:COG1196 388 LLE-ALRAAAELAAQLEELEEAEEALLERLERLEEELEEL--EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 176 LFDLKTKYDEETTAKADEIEmimtDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEV 255
Cdd:COG1196 465 LAELLEEAALLEAALAELLE----ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 256 ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSE 335
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 336 -------GAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELIARLEQDLSIIQS 408
Cdd:COG1196 621 tllgrtlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 409 IQRPDAEGAAEHRLEKIPEPIKEATAlfygpaapasgalpEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQ 488
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEAL--------------EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
....*....
gi 321400114 489 SELDSLRAD 497
Cdd:COG1196 767 RELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
25-365 |
7.47e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 7.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 25 DATATVLANRQDESEQSRKRLIEQSREFkkntpEDLRKQVAPLLKSF---QGEIDALSKRSKEAEAAFLNVYKRLIDVpE 101
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKI-----AELEKALAELRKELeelEEELEQLRKELEELSRQISALRKDLARL-E 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 102 VTIKALKEKIREYEQTLKNQAE--TIALEKEQKLQNDFAEKERKLQETQmsttSKLEEAEHKVQSLQTALEKTRTELFDL 179
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAeiEELEERLEEAEEELAEAEAEIEELE----AQIEQLKEELKALREALDELRAELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 180 KTKYDEettaKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLqlasqiqkapdveqaievltrSSLEVELAA 259
Cdd:TIGR02168 816 NEEAAN----LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI---------------------EELEELIEE 870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 260 KEREIAQLVEDVQRLQASLTKLR---ENSASQISQLEQQLSAKNSTLKQLEEKLkGQADYEEVKKELNILKSMEFAPSEG 336
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRselEELSEELRELESKRSELRRELEELREKL-AQLELRLEGLEVRIDNLQERLSEEY 949
|
330 340
....*....|....*....|....*....
gi 321400114 337 AGTQDAAKPLEVLLLEKNRSLQSENAALR 365
Cdd:TIGR02168 950 SLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
105-533 |
3.37e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 3.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 105 KALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERK---LQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKT 181
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAEleeLEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 182 KYDEETTAKADEIEMIM---TDLERANQRAEVAQREAETLREQLSSANHSL------------QLASQIQKAPDVEQAIE 246
Cdd:COG1196 296 ELARLEQDIARLEERRReleERLEELEEELAELEEELEELEEELEELEEELeeaeeeleeaeaELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 247 --VLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQADYEEVKKELN 324
Cdd:COG1196 376 eaEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 325 ILKSMEFAPSEGAGTQ---------------DAAKPLEVLLLE--KNRSLQSENAALRISNSDLSGRCAELQVRITEAVA 387
Cdd:COG1196 456 EEEEALLELLAELLEEaalleaalaelleelAEAAARLLLLLEaeADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 388 TATEQRELIARLEQDlsiIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAPASGALPEGQVDSLLSIISSQRERFR 467
Cdd:COG1196 536 YEAALEAALAAALQN---IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 321400114 468 ARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERL 533
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
31-311 |
4.63e-07 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 52.77 E-value: 4.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 31 LANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLlksfQGEIDALSKRSKEAEAaflnvYKRLIDVpevtIKALKEK 110
Cdd:pfam05622 63 LLQKQLEQLQEENFRLETARDDYRIKCEELEKEVLEL----QHRNEELTSLAEEAQA-----LKDEMDI----LRESSDK 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 111 IREYEQTLknqaETIalekEQKLQ--NDFAEKERKLQETQ---MSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDE 185
Cdd:pfam05622 130 VKKLEATV----ETY----KKKLEdlGDLRRQVKLLEERNaeyMQRTLQLEEELKKANALRGQLETYKRQVQELHGKLSE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 186 ETTaKADEIEMIMTDLEranQRAEVAQREAETL---REQLSSANHSLQlASQIQKApDVEQAIEVLTRSSLEVELAAKER 262
Cdd:pfam05622 202 ESK-KADKLEFEYKKLE---EKLEALQKEKERLiieRDTLRETNEELR-CAQLQQA-ELSQADALLSPSSDPGDNLAAEI 275
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 321400114 263 EIAQLVEDVQRLQASLTKLRE----NSASQISQLEQQLSAKNSTLKQLEEKLK 311
Cdd:pfam05622 276 MPAEIREKLIRLQHENKMLRLgqegSYRERLTELQQLLEDANRRKNELETQNR 328
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
127-411 |
4.80e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 4.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 127 LEKEQKLQNDFAEKERKLQETQMS-TTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTakadEIEMIMTDLERAN 205
Cdd:TIGR02168 205 LERQAEKAERYKELKAELRELELAlLVLRLEELREELEELQEELKEAEEELEELTAELQELEE----KLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 206 QRAEVAQREAETLREQLSSANHSLQLASqiQKAPDVEQAIEVLTRSSLEV---------ELAAKEREIAQLVEDVQRLQA 276
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILR--ERLANLERQLEELEAQLEELeskldelaeELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 277 SLTKLR---ENSASQISQLEQQLSAKNSTLKQLEEKLKG-QADYEEVKKELNILKSM-EFAPSEGAGTQDAAKPLEVLLL 351
Cdd:TIGR02168 359 ELEELEaelEELESRLEELEEQLETLRSKVAQLELQIASlNNEIERLEARLERLEDRrERLQQEIEELLKKLEEAELKEL 438
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 321400114 352 EKNRS-LQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQR 411
Cdd:TIGR02168 439 QAELEeLEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
126-322 |
1.12e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 126 ALEKEQKLQNDFAEKERKLQETQmsttSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEettaKADEIEMIMTDLERAN 205
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELE----KELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 206 QRAEVAQREAETLREQLSSANHSLQLASQIQK------APDVEQAIEVLT--------RSSLEVELAAKEREIAQLVEDV 271
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPlalllsPEDFLDAVRRLQylkylapaRREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 321400114 272 QRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQADYEEVKKE 322
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
105-408 |
1.13e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 105 KALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQmsttsklEEAEHKVQSLQTALEKTRTELFDLKTKYD 184
Cdd:TIGR02169 214 QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLT-------EEISELEKRLEEIEQLLEELNKKIKDLGE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 185 EETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSsanhslQLASQIQKapdVEQAIEvltrsSLEVELAAKEREI 264
Cdd:TIGR02169 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA------KLEAEIDK---LLAEIE-----ELEREIEEERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 265 AQLVEDVQRLQASLTKLRensaSQISQLEQQLSAKNSTLKQLEEKLkgqadyEEVKKELNILKsmefapsegaGTQDAak 344
Cdd:TIGR02169 353 DKLTEEYAELKEELEDLR----AELEEVDKEFAETRDELKDYREKL------EKLKREINELK----------RELDR-- 410
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 321400114 345 plevlLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELIARLEQDLSIIQS 408
Cdd:TIGR02169 411 -----LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
68-288 |
1.25e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 68 LKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVpEVTIKALKEKIREYEQTLKNQAETIAL--EKEQKLQNDFAEKERKLQ 145
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAAL-ERRIAALARRIRALEQELAALEAELAEleKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 146 ET-----QMSTTSKLEEAEHKVQSLQTAlekTRTELFDLKTKYDEEttaKADEIEMIMTDLERANQRAEVAQREAETLRE 220
Cdd:COG4942 108 ELlralyRLGRQPPLALLLSPEDFLDAV---RRLQYLKYLAPARRE---QAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 321400114 221 QLSSANHSLQLASQIQKApdveqaievlTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQ 288
Cdd:COG4942 182 ELEEERAALEALKAERQK----------LLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
104-362 |
1.80e-06 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 51.11 E-value: 1.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 104 IKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKY 183
Cdd:COG5185 291 FENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 184 D-EETTAKAD-----------EIEMIMTDLERANQRAE--------VAQREAETLREQLSSANHSLQLASQIQKA----- 238
Cdd:COG5185 371 ElSKSSEELDsfkdtiestkeSLDEIPQNQRGYAQEILatledtlkAADRQIEELQRQIEQATSSNEEVSKLLNElisel 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 239 PDVEQAIEVLTRSSLEVELAAKEREIAQ----LVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA 314
Cdd:COG5185 451 NKVMREADEESQSRLEEAYDEINRSVRSkkedLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFM 530
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 321400114 315 DYEEvkkELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENA 362
Cdd:COG5185 531 RARG---YAHILALENLIPASELIQASNAKTDGQAANLRTAVIDELTQ 575
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
33-435 |
2.80e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 33 NRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAflNVYKRLIDVPEVTIKALKEKIR 112
Cdd:PTZ00121 1087 NRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKA--EEARKAEDAKRVEIARKAEDAR 1164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 113 EYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDL--KTKYDEETTAK 190
Cdd:PTZ00121 1165 KAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKaeEAKKDAEEAKK 1244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 191 ADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSL--EVELAAKEREIAQLV 268
Cdd:PTZ00121 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAkkKAEEAKKADEAKKKA 1324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 269 EDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG--------QADYEEVKKELNILKSMEFAPSEGAGTQ 340
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAaekkkeeaKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 341 DAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQR---ELIARLEQDLSIIQSIQRPDAEGA 417
Cdd:PTZ00121 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKkaeEAKKKAEEAKKADEAKKKAEEAKK 1484
|
410
....*....|....*...
gi 321400114 418 AEHRLEKIPEPIKEATAL 435
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEA 1502
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
104-307 |
6.76e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 6.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 104 IKALkEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERK---LQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLK 180
Cdd:COG4913 251 IELL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRRlelLEAELEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 181 TKYDEettAKADEIEmimtDLERANQRAEVAQREAETLREQLSSANHSLQLAsqiqkAPDVEQaievltrsslevELAAK 260
Cdd:COG4913 330 AQIRG---NGGDRLE----QLEREIERLERELEERERRRARLEALLAALGLP-----LPASAE------------EFAAL 385
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 321400114 261 EREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLE 307
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
186-408 |
1.05e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 186 ETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRS----SLEVELAAKE 261
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQrrleLLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 262 REIAQLVEDVQRLQASLTKLRE-----------NSASQISQLEQQLSAKNSTLKQLEEKLkgqADYEEVKKELnilksme 330
Cdd:COG4913 302 AELARLEAELERLEARLDALREeldeleaqirgNGGDRLEQLEREIERLERELEERERRR---ARLEALLAAL------- 371
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 321400114 331 fapseGAGTQDAAKPLEVLLLEKNRSLQSENAALrisnsdlsgrcAELQVRITEAVATATEQRELIARLEQDLSIIQS 408
Cdd:COG4913 372 -----GLPLPASAEEFAALRAEAAALLEALEEEL-----------EALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
103-328 |
1.41e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 103 TIKALKEKIREYE-QTLKNQAETIALEKE-QKLQNDFAEKERKLQETQ-----------------MSTTSKLEEAEHKVQ 163
Cdd:TIGR04523 205 NLKKKIQKNKSLEsQISELKKQNNQLKDNiEKKQQEINEKTTEISNTQtqlnqlkdeqnkikkqlSEKQKELEQNNKKIK 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 164 SLQTALEKTRTELFDLKTKYDEETTAKADEiemimtdlERANQraevaQREAETLREQLSSANHSL-QLASQIQKAPDVE 242
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQDWNKELKS--------ELKNQ-----EKKLEEIQNQISQNNKIIsQLNEQISQLKKEL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 243 QAIEvLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRensaSQISQLEQQLSAKNSTLKQLEEKLKG-QADYEEVKK 321
Cdd:TIGR04523 352 TNSE-SENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE----SQINDLESKIQNQEKLNQQKDEQIKKlQQEKELLEK 426
|
....*..
gi 321400114 322 ELNILKS 328
Cdd:TIGR04523 427 EIERLKE 433
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
27-314 |
1.87e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 27 TATVLANRQDESEQSRKRLIEQSREFKK---NTPEDLRKQVAPLlKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPEvT 103
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAELESeleEAREAVEDRREEI-EELEEEIEELRERFGDAPVDLGNAEDFLEELRE-E 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 104 IKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTskLEEAEHKVQSLQTALEKTRTELFDLKTKY 183
Cdd:PRK02224 421 RDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVET--IEEDRERVEELEAELEDLEEEVEEVEERL 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 184 DEETTAK--ADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQ-LASQIQKAPDVEQAIEVLTRSSLEvELAAK 260
Cdd:PRK02224 499 ERAEDLVeaEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAeLEAEAEEKREAAAEAEEEAEEARE-EVAEL 577
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 261 EREIAQLVEDVQRLQ--ASLTKLRENSASQISQLEQQ--------------LSAKNSTLKQLEEKLKGQA 314
Cdd:PRK02224 578 NSKLAELKERIESLEriRTLLAAIADAEDEIERLREKrealaelnderrerLAEKRERKRELEAEFDEAR 647
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
105-309 |
2.39e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.32 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 105 KALKEKIREYEQTLKNQAETIALEKEQ-KLQNDFAEKERKL-----QETQMSTTSKLEEAE-HKVQSLQT---------- 167
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQiKTYNKNIEEQRKKngeniARKQNKYDELVEEAKtIKAEIEELtdellnlvmd 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 168 ------ALEKTRTELFDLKTKYD-----EETTAKADEIEMIMTDLERANQRaevaqreAETLREQLSSANHSL-QLASQI 235
Cdd:PHA02562 250 iedpsaALNKLNTAAAKIKSKIEqfqkvIKMYEKGGVCPTCTQQISEGPDR-------ITKIKDKLKELQHSLeKLDTAI 322
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 321400114 236 QKAPDVEQAIEVLTRSSLEV--ELAAKEREIAQLVEDVQRLQASLTKL---RENSASQISQLEQQLSAKNSTLKQLEEK 309
Cdd:PHA02562 323 DELEEIMDEFNEQSKKLLELknKISTNKQSLITLVDKAKKVKAAIEELqaeFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
80-344 |
2.81e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 80 KRSKEAEAAFLNVYKRLIDVPEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAE 159
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 160 HKVQSLQTALEKTRTELFDLKTKyDEETTAKADEIEmimTDLERANQRAEVAQREAETLR--EQLSSANhslqlASQIQK 237
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKK-AEEDKKKAEEAK---KAEEDEKKAAEALKKEAEEAKkaEELKKKE-----AEEKKK 1717
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 238 APDVEQAIEVltrSSLEVELAAKEREiaqlvEDvqRLQASLTKLRENSASQISQLEQQLSAKNSTL-KQLEEKLKGQADY 316
Cdd:PTZ00121 1718 AEELKKAEEE---NKIKAEEAKKEAE-----ED--KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIrKEKEAVIEEELDE 1787
|
250 260
....*....|....*....|....*...
gi 321400114 317 EEVKKELNILKSMEFAPSEGAGTQDAAK 344
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIFDNFANIIEGGK 1815
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
109-364 |
2.91e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 2.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 109 EKIREYEQTLKNQAETIALEKEqKLQNDFAEKERKLQETqmstTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEett 188
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELR-RIENRLDELSQELSDA----SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS--- 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 189 aKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSL------QLASQIQKAPDVEQAIEVLTRSsLEVELAAKER 262
Cdd:TIGR02169 749 -LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshsripEIQAELSKLEEEVSRIEARLRE-IEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 263 EIAQLVEDVQRLQASLTKLRENSAS----------QISQLEQQLSAKNSTLKQLEEKLKG-QADYEEVKKElniLKSMEF 331
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSiekeienlngKKEELEEELEELEAALRDLESRLGDlKKERDELEAQ---LRELER 903
|
250 260 270
....*....|....*....|....*....|...
gi 321400114 332 APSEGAGTQDAAKPLEVLLLEKNRSLQSENAAL 364
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
35-424 |
3.30e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 35 QDESEQSRKRLIE-QSREFKKNTPEDLRKQVAPLLKSfqgeiDALSKRSKEAEAAflnvyKRLIDVPEVTIKA--LKEKI 111
Cdd:PTZ00121 1397 KKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKA-----DEAKKKAEEAKKA-----DEAKKKAEEAKKAeeAKKKA 1466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 112 REyeqtlKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELF---DLKTKYDE--- 185
Cdd:PTZ00121 1467 EE-----AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkkaEEAKKADEakk 1541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 186 -ETTAKADEIEMiMTDLERANQRAEVAQREAEtlREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREI 264
Cdd:PTZ00121 1542 aEEKKKADELKK-AEELKKAEEKKKAEEAKKA--EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA 1618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 265 AQLVEDVQRLQASLTKLRE---------NSASQISQLEQQLSAKNSTLKQLEEKLKGQAdyEEVKKELNILKSMEFAPSE 335
Cdd:PTZ00121 1619 KIKAEELKKAEEEKKKVEQlkkkeaeekKKAEELKKAEEENKIKAAEEAKKAEEDKKKA--EEAKKAEEDEKKAAEALKK 1696
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 336 GAGTQDAAKPLEVLLLEKNRSLQSENAA--LRISNSDLSGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPD 413
Cdd:PTZ00121 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAeeENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
410
....*....|.
gi 321400114 414 AEGAAEHRLEK 424
Cdd:PTZ00121 1777 KEAVIEEELDE 1787
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
37-326 |
3.65e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 3.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 37 ESEQSRKRLIEQSREFKkNTPEDLRKqvaplLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPEVTIKALKEKIREYEQ 116
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIK-SLKKELEK-----LEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP 599
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 117 tlknqaetiALEKEQKLQNDFAEKERKLQEtQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEiem 196
Cdd:PRK03918 600 ---------FYNEYLELKDAEKELEREEKE-LKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE--- 666
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 197 IMTDLERANQRAEVAQREAETLREQLSSAnhslqlasqiqkAPDVEQAIEVLTRSSLEVELAAKERE-IAQLVEDVQRLQ 275
Cdd:PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKT------------LEKLKEELEEREKAKKELEKLEKALErVEELREKVKKYK 734
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 321400114 276 AsltKLRENSASQISQLEQQLSAK-------NSTLKQLEEKLKGQADYEEVKKELNIL 326
Cdd:PRK03918 735 A---LLKERALSKVGEIASEIFEEltegkysGVRVKAEENKVKLFVVYQGKERPLTFL 789
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
32-281 |
3.98e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.55 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 32 ANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDV---PEVTIKALK 108
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLvmdIEDPSAALN 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 109 eKIREYEQTLKNQAETIAleKEQKLQNDfaekerklQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETt 188
Cdd:PHA02562 259 -KLNTAAAKIKSKIEQFQ--KVIKMYEK--------GGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELE- 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 189 akadeiemimtdlERANQRAEvAQREAETLREQLSSANHSLQLAsqIQKAPDVEQAIEvltrsSLEVELAAKEREIAQLV 268
Cdd:PHA02562 327 -------------EIMDEFNE-QSKKLLELKNKISTNKQSLITL--VDKAKKVKAAIE-----ELQAEFVDNAEELAKLQ 385
|
250
....*....|...
gi 321400114 269 EDVQRLQASLTKL 281
Cdd:PHA02562 386 DELDKIVKTKSEL 398
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
104-314 |
4.32e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 104 IKALKEKIREYEQTLKNQAETI--ALEKEQKLQNDFAEKERKLQETQmsttSKLEEAEHKVQSLQTALEKTRTELFDLKT 181
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEkaLLKQLAALERRIAALARRIRALE----QELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 182 KYDEETTA--------------KADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEV 247
Cdd:COG4942 105 ELAELLRAlyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 321400114 248 LTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSAsqisQLEQQLSAKNSTLKQLEEKLKGQA 314
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAE----ELEALIARLEAEAAAAAERTPAAG 247
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
141-329 |
7.01e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 7.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 141 ERKLQETQMSTT---SKLEEAEHKVQSLQTALE--KTRTELFDLktkyDEETTAKADEIEMIMTDLERANQRAEVAQREA 215
Cdd:COG3206 167 ELRREEARKALEfleEQLPELRKELEEAEAALEefRQKNGLVDL----SEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 216 ETLREQLSSANHSL-------QLASQIQKAPDVEQAIEVLTRSSLE-----VELAAKEREI-AQLVEDVQRLQASLTKLR 282
Cdd:COG3206 243 AALRAQLGSGPDALpellqspVIQQLRAQLAELEAELAELSARYTPnhpdvIALRAQIAALrAQLQQEAQRILASLEAEL 322
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 321400114 283 ENSASQISQLEQQLSAKNSTLKQLEEKlkgQADYEEVKKELNILKSM 329
Cdd:COG3206 323 EALQAREASLQAQLAQLEARLAELPEL---EAELRRLEREVEVAREL 366
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
206-403 |
9.45e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 9.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 206 QRAEVAQREAETLREQLSSANHSLQLASQIQKApdVEQAIEVLTRSSlevELAAKEREIAQLVEDVQRLQASLTKLRENS 285
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDA--LQERREALQRLA---EYSWDEIDVASAEREIAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 286 aSQISQLEQQLSAKNSTLKQLEEKLKG-QADYEEVKKELNILKSmefapsegagTQDAAKPLEVLLLEKNRSLQSENAAL 364
Cdd:COG4913 685 -DDLAALEEQLEELEAELEELEEELDElKGEIGRLEKELEQAEE----------ELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190
....*....|....*....|....*....|....*....
gi 321400114 365 RISNSDLSGRCAELQVRITEAVATATEQReliARLEQDL 403
Cdd:COG4913 754 RFAAALGDAVERELRENLEERIDALRARL---NRAEEEL 789
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
18-312 |
1.27e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 18 QQLQRELDATATVLANRQDESE-------QSRKRLIEQSRE--FKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAA 88
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAaaeeqlvQANGELEKASREetFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 89 flnVYKRLIDVpEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNdfAEKERKLQETQMSTTSKLEEAEHKVQslQTA 168
Cdd:pfam12128 680 ---ANERLNSL-EAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQV--VEGALDAQLALLKAAIAARRSGAKAE--LKA 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 169 LEKTRTElfDLKTK-YDEETTAK-ADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQlasqIQKApDVEQAIE 246
Cdd:pfam12128 752 LETWYKR--DLASLgVDPDVIAKlKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLA----TQLS-NIERAIS 824
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 321400114 247 vltrsslevelaakereiaqlvedvqRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG 312
Cdd:pfam12128 825 --------------------------ELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRG 864
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
150-345 |
2.08e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 150 STTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEettaKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSL 229
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDALQAELEELNEEYNE----LQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 230 Q-------------LASQIQKAPDVEQAIEVLTRSSLEV--ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 294
Cdd:COG3883 96 YrsggsvsyldvllGSESFSDFLDRLSALSKIADADADLleELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 321400114 295 QLSAKNSTLKQLEEKLK-GQADYEEVKKELNILKSMEFAPSEGAGTQDAAKP 345
Cdd:COG3883 176 QQAEQEALLAQLSAEEAaAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAA 227
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
100-409 |
2.09e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 100 PEVTIKALKEKIREYE---------QTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSL----- 165
Cdd:pfam17380 254 PEYTVRYNGQTMTENEflnqllhivQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEmdrqa 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 166 -------QTALEKTRT-ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQK 237
Cdd:pfam17380 334 aiyaeqeRMAMERERElERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQR 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 238 APDVEQAIEVLTRSSLEvelAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQADYE 317
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQE---EARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 318 EVKKELnILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELIA 397
Cdd:pfam17380 491 EQRRKI-LEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLE 569
|
330
....*....|..
gi 321400114 398 RLEQDLSIIQSI 409
Cdd:pfam17380 570 AMEREREMMRQI 581
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
16-401 |
2.26e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 16 DLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAflnvykr 95
Cdd:COG4717 89 EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 96 lidvpEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQnDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTE 175
Cdd:COG4717 162 -----EEELEELEAELAELQEELEELLEQLSLATEEELQ-DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 176 LFDLKtkyDEETTAKADEIEMIMT-----------DLERANQRAEVAQ-------REAETLREQLSSANHSLQLASQIQK 237
Cdd:COG4717 236 LEAAA---LEERLKEARLLLLIAAallallglggsLLSLILTIAGVLFlvlgllaLLFLLLAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 238 APDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRE-NSASQISQLEQQLS-----AKNSTLKQLEEKLK 311
Cdd:COG4717 313 LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEElEEELQLEELEQEIAallaeAGVEDEEELRAALE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 312 GQADYEEVKKELNILKSmEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRItEAVATATE 391
Cdd:COG4717 393 QAEEYQELKEELEELEE-QLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL-EQLEEDGE 470
|
410
....*....|
gi 321400114 392 QRELIARLEQ 401
Cdd:COG4717 471 LAELLQELEE 480
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
35-329 |
3.27e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 3.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 35 QDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIdALSKRSKEAEAAFLNVYK-----RLIDVPEVTIKALKE 109
Cdd:TIGR00618 601 EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQEL-ALKLTALHALQLTLTQERvrehaLSIRVLPKELLASRQ 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 110 KIREYEQTLKNQA----ETIA--LEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRtELFDLKTKY 183
Cdd:TIGR00618 680 LALQKMQSEKEQLtywkEMLAqcQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELM-HQARTVLKA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 184 DEETTAKADE----IEMIMTDLERANQRAEVAQREAETLREQLSsanhslQLASQI-QKAPDVEQAIEVltrsslevela 258
Cdd:TIGR00618 759 RTEAHFNNNEevtaALQTGAELSHLAAEIQFFNRLREEDTHLLK------TLEAEIgQEIPSDEDILNL----------- 821
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 321400114 259 akereiaQLVEDVQRLQASLTKLRENSASQIsQLEQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSM 329
Cdd:TIGR00618 822 -------QCETLVQEEEQFLSRLEEKSATLG-EITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQI 884
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
43-509 |
3.42e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 43 KRLIEQSREFKKNTPEDLRKQVAPL---LKSFQGEIDALS---KRSKEAEAAFLNVYKRLIDVPEVTiKALKEKIREYEQ 116
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLqtkLQEMQMERDAMAdirRRESQSQEDLRNQLQNTVHELEAA-KCLKEDMLEDSN 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 117 TLKNQAETIALEKEQKLQN------DFAEKERK--LQETQMSTT--SKLEEAEHKV-QSLQTALEKTRTELFDLKTKYDE 185
Cdd:pfam15921 170 TQIEQLRKMMLSHEGVLQEirsilvDFEEASGKkiYEHDSMSTMhfRSLGSAISKIlRELDTEISYLKGRIFPVEDQLEA 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 186 ETTAKADEIEMIMTD-LERANQRAEVAQREAETLREQLSSANhslqlasqiQKAPDVEQAIEVLTRSSLEvELAAKEREI 264
Cdd:pfam15921 250 LKSESQNKIELLLQQhQDRIEQLISEHEVEITGLTEKASSAR---------SQANSIQSQLEIIQEQARN-QNSMYMRQL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 265 AQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQ--------------LEEKL-KGQADYEEVKKELNILKSM 329
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEarterdqfsqesgnLDDQLqKLLADLHKREKELSLEKEQ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 330 -EFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAelqvRITEAVATATEQRELIARLEQDLSIIQS 408
Cdd:pfam15921 400 nKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME----RQMAAIQGKNESLEKVSSLTAQLESTKE 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 409 IQRPDAE--GAAEHRLEKIPEPIKEATalfygpaapASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHtLQA 486
Cdd:pfam15921 476 MLRKVVEelTAKKMTLESSERTVSDLT---------ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDH-LRN 545
|
490 500
....*....|....*....|...
gi 321400114 487 LQSELDSLRadnIKLFEKIKFLQ 509
Cdd:pfam15921 546 VQTECEALK---LQMAEKDKVIE 565
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
204-451 |
4.30e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 204 ANQRAEVAQREAETLREQLSSANHslQLASQIQKAPDVEQAIEvltrsSLEVELAAKEREIAQLVEDVQRLQASLTKLRE 283
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEK--ELAALKKEEKALLKQLA-----ALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 284 nsasQISQLEQQLSAKNSTLKQLEEKL--KGQADYEEVkkelnILKSMEFAPSE------GAGTQDAAKPLEVLLLEKNR 355
Cdd:COG4942 91 ----EIAELRAELEAQKEELAELLRALyrLGRQPPLAL-----LLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 356 sLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELIARLEQDLSIIQsiQRPDAEGAAEHRLEKIPEPIKEATAL 435
Cdd:COG4942 162 -LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA--AELAELQQEAEELEALIARLEAEAAA 238
|
250
....*....|....*.
gi 321400114 436 FYGPAAPASGALPEGQ 451
Cdd:COG4942 239 AAERTPAAGFAALKGK 254
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
121-401 |
4.70e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 4.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 121 QAETIALEKEQKLQNDFAEKERKLQETQMST---TSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTaKADEIEMI 197
Cdd:PRK04863 341 QTALRQQEKIERYQADLEELEERLEEQNEVVeeaDEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT-RAIQYQQA 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 198 MTDLERANQ--------------RAEVAQREAETLREQLSSANHSLQLASQIQKApdVEQAIEVLTRSSLEVelaakERE 263
Cdd:PRK04863 420 VQALERAKQlcglpdltadnaedWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQ--FEQAYQLVRKIAGEV-----SRS 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 264 IAQlvedvQRLQASLTKLRE--NSASQISQLEQQLSAknstlkqLEEKLKGQADYEEVKKELNilKSMEFAPSEGAGTQD 341
Cdd:PRK04863 493 EAW-----DVARELLRRLREqrHLAEQLQQLRMRLSE-------LEQRLRQQQRAERLLAEFC--KRLGKNLDDEDELEQ 558
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 342 AAKPLEVLLLeknrSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELIARLEQ 401
Cdd:PRK04863 559 LQEELEARLE----SLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR 614
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
128-510 |
5.12e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.19 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 128 EKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRtELFDLKTKYDEETTAKADEIEMIMTDLERANQR 207
Cdd:pfam05557 48 DRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLN-EKESQLADAREVISCLKNELSELRRQIQRAELE 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 208 AEVAQREAETLREQL----------SSANHSLQ-----LASQIQKAPDVEQAIEVLTRSSLEVELAAKERE-IAQLVEDV 271
Cdd:pfam05557 127 LQSTNSELEELQERLdllkakaseaEQLRQNLEkqqssLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELArIPELEKEL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 272 QRLQASLTKLRENSASqISQLEQQLSAKNSTLKQLE----EKLKGQADYEEVKKELNILKSMEFAPSEGAGTQDAAKPL- 346
Cdd:pfam05557 207 ERLREHNKHLNENIEN-KLLLKEEVEDLKRKLEREEkyreEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRi 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 347 ------EVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELIARLEQDLSII--------QSIQRP 412
Cdd:pfam05557 286 eqlqqrEIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLtkerdgyrAILESY 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 413 DAEGAAEHRLEKIPEPIKEATALFYGPAAPASGAlpEGQVDSLLSIISSQRERFRA--------RNQELEAENRLAQHTL 484
Cdd:pfam05557 366 DKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEM--EAQLSVAEEELGGYKQQAQTlerelqalRQQESLADPSYSKEEV 443
|
410 420
....*....|....*....|....*.
gi 321400114 485 QALQSELDSLRADNIKLFEKIKFLQS 510
Cdd:pfam05557 444 DSLRRKLETLELERQRLREQKNELEM 469
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
38-329 |
5.17e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 5.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 38 SEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAE-AAFLNVYKRLIDVPE----VTIKALKEKIR 112
Cdd:PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESElIKLKELAEQLKELEEklkkYNLEELEKKAE 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 113 EYEQTLKnqaETIALEKEQKLQNDFAEKERKLQetqmsttSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKAD 192
Cdd:PRK03918 526 EYEKLKE---KLIKLKGEIKSLKKELEKLEELK-------KKLAELEKKLDELEEELAELLKELEELGFESVEELEERLK 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 193 EIEMI---MTDLERANQRAEVAQREAETLREQLSSANHSLQLASQiqKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVE 269
Cdd:PRK03918 596 ELEPFyneYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK--RLEELRKELEELEKKYSEEEYEELREEYLELSR 673
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 270 DVQRLQAsltklrensasQISQLEQQLSAKNSTLKQLEEKLKgqaDYEEVKKELNILKSM 329
Cdd:PRK03918 674 ELAGLRA-----------ELEELEKRREEIKKTLEKLKEELE---EREKAKKELEKLEKA 719
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
68-281 |
9.43e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 9.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 68 LKSFQGEIDALSKRSKEAEAAfLNVYKR---LIDVPEVTiKALKEKIREYEQTLkNQAETIALEKEQKLQndfaEKERKL 144
Cdd:COG3206 177 LEFLEEQLPELRKELEEAEAA-LEEFRQkngLVDLSEEA-KLLLQQLSELESQL-AEARAELAEAEARLA----ALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 145 QETQMSTTSKLEEAEhkVQSLQTALEKTRTELFDLKTKYDEettakaDEIEMIMTDLERANQRAEVAQREAETLREQLSs 224
Cdd:COG3206 250 GSGPDALPELLQSPV--IQQLRAQLAELEAELAELSARYTP------NHPDVIALRAQIAALRAQLQQEAQRILASLEA- 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 321400114 225 anhslQLASQIQKAPDVEQAIEVLTRSSLEveLAAKEREIAQLVEDVQRLQASLTKL 281
Cdd:COG3206 321 -----ELEALQAREASLQAQLAQLEARLAE--LPELEAELRRLEREVEVARELYESL 370
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
105-402 |
9.65e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 9.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 105 KALKEKIREYEQTLKNQAETIALEK-EQKLQNDFAEKERKLQETQmsttsKLEEAEhkvqsLQTALEKTRTELFDLKTKY 183
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLqELKLKEQAKKALEYYQLKE-----KLELEE-----EYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 184 DEETTAKADEIEMImtdleraNQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKERE 263
Cdd:pfam02463 243 QELLRDEQEEIESS-------KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 264 IAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSmefapSEGAGTQDAA 343
Cdd:pfam02463 316 LKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK-----LESERLSSAA 390
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 321400114 344 KPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELIARLEQD 402
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEE 449
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
101-495 |
1.20e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 101 EVTIKALKEKIREYEQTLKNQAETialekEQKLQNDFAEKERKLQETQmsttsKLEEAEHKVQSLQTALEKTRTELFDLK 180
Cdd:PRK02224 212 ESELAELDEEIERYEEQREQARET-----RDEADEVLEEHEERREELE-----TLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 181 TKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKApdVEQAIEVLTRSSLEVELAAK 260
Cdd:PRK02224 282 RDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA--HNEEAESLREDADDLEERAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 261 E-REIAQLVEDvqRLQASLTKLREnSASQISQLEQQLSAKNSTLKQLEEKLKGQADY-EEVKKELNILKSMEfapsegag 338
Cdd:PRK02224 360 ElREEAAELES--ELEEAREAVED-RREEIEELEEEIEELRERFGDAPVDLGNAEDFlEELREERDELRERE-------- 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 339 tqdaaKPLEVLL------LEKNRSLQSEnaalrisnsdlsGRCAEL--QVRITEAVATATEQRELIARLEQDLSIIQS-- 408
Cdd:PRK02224 429 -----AELEATLrtarerVEEAEALLEA------------GKCPECgqPVEGSPHVETIEEDRERVEELEAELEDLEEev 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 409 ------IQRPDAEGAAEHRLEKIPEPIKEATALfygpaapasgalpegqVDSLLSIISSQRER---FRARNQELEAENRL 479
Cdd:PRK02224 492 eeveerLERAEDLVEAEDRIERLEERREDLEEL----------------IAERRETIEEKRERaeeLRERAAELEAEAEE 555
|
410
....*....|....*.
gi 321400114 480 AQHTLQALQSELDSLR 495
Cdd:PRK02224 556 KREAAAEAEEEAEEAR 571
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
32-363 |
1.31e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 32 ANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKsfqgEIDALSKRSKEAEAAfLNVYKRLIDVPEVTIKALKEKI 111
Cdd:PTZ00121 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK----KADAAKKKAEEAKKA-AEAAKAEAEAAADEAEAAEEKA 1366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 112 REYE---QTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRtELFDLKTKYDEETt 188
Cdd:PTZ00121 1367 EAAEkkkEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK-KADEAKKKAEEAK- 1444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 189 aKADEIEMIMTDleraNQRAEVAQREAETLREqlssANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKER---EIA 265
Cdd:PTZ00121 1445 -KADEAKKKAEE----AKKAEEAKKKAEEAKK----ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKkkaDEA 1515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 266 QLVEDVQRLQASLTKLRENSASQISQLEQQLSA----KNSTLKQLEEKLKG-QADYEEVKKELNILKSMEFAPSEGAGTQ 340
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAdelkKAEELKKAEEKKKAeEAKKAEEDKNMALRKAEEAKKAEEARIE 1595
|
330 340
....*....|....*....|...
gi 321400114 341 DAAKPLEVLLLEKNRSLQSENAA 363
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEA 1618
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
72-327 |
1.36e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 72 QGEIDALSKRSKEAEAA---------FLNVYKRLIDVpevtIKALKEKIREYEQTLKNQAETIALEKEQKlqNDFAEKER 142
Cdd:PRK03918 134 QGEIDAILESDESREKVvrqilglddYENAYKNLGEV----IKEIKRRIERLEKFIKRTENIEELIKEKE--KELEEVLR 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 143 KLQETqMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKtKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQL 222
Cdd:PRK03918 208 EINEI-SSELPELREELEKLEKEVKELEELKEEIEELE-KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 223 SS----ANHSLQLASQIQKAPDVEQAIEVlTRSSLEVELAAKEREIAQLVEDVQRLQaSLTKLRENSASQISQLE----- 293
Cdd:PRK03918 286 KElkekAEEYIKLSEFYEEYLDELREIEK-RLSRLEEEINGIEERIKELEEKEERLE-ELKKKLKELEKRLEELEerhel 363
|
250 260 270
....*....|....*....|....*....|....*
gi 321400114 294 -QQLSAKNSTLKQLEEKLKGQaDYEEVKKELNILK 327
Cdd:PRK03918 364 yEEAKAKKEELERLKKRLTGL-TPEKLEKELEELE 397
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
152-370 |
1.55e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 152 TSKLEEAEHKVQSLQTALEKTRTELFDLKTKydEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQlsSANHSLQL 231
Cdd:TIGR01612 1073 KEILEEAEINITNFNEIKEKLKHYNFDDFGK--EENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKK--SENYIDEI 1148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 232 ASQIQKAPDVeqAIEVLTRSSLEvELAAKEREIAQLVEDVQRLQASLTKLrensASQISQLEQQLSA----KNSTL---K 304
Cdd:TIGR01612 1149 KAQINDLEDV--ADKAISNDDPE-EIEKKIENIVTKIDKKKNIYDEIKKL----LNEIAEIEKDKTSleevKGINLsygK 1221
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 321400114 305 QLEEKLKGQADyEEVKKELNILKSMEfAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSD 370
Cdd:TIGR01612 1222 NLGKLFLEKID-EEKKKSEHMIKAME-AYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDD 1285
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
37-375 |
1.71e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 37 ESEQSRKRLIEQSREfkKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPEVTIKALKEKIREYEQ 116
Cdd:pfam02463 181 ETENLAELIIDLEEL--KLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQ 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 117 TLKNQAETIAL--------EKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETT 188
Cdd:pfam02463 259 EIEKEEEKLAQvlkenkeeEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 189 AKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLV 268
Cdd:pfam02463 339 ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLE 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 269 EDVQRLQASLTKLREnsASQISQLEQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEV 348
Cdd:pfam02463 419 DLLKEEKKEELEILE--EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
330 340
....*....|....*....|....*..
gi 321400114 349 LLLEKNRSLQSENAALRISNSDLSGRC 375
Cdd:pfam02463 497 ERSQKESKARSGLKVLLALIKDGVGGR 523
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
66-325 |
1.74e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 66 PLLKSFQGEIDALSKRsKEAEAAFLNVYKRLIDVPEV--TIKALKEKIREYEQTLKNQAETI--ALEKEQKLQNDFAEKE 141
Cdd:PRK11281 36 PTEADVQAQLDALNKQ-KLLEAEDKLVQQDLEQTLALldKIDRQKEETEQLKQQLAQAPAKLrqAQAELEALKDDNDEET 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 142 RklqeTQMSTTSkleeaehkVQSLQTALEKTRTELFDLKTkydeettakadeiemimtDLERANQRAEVAQREAETLREQ 221
Cdd:PRK11281 115 R----ETLSTLS--------LRQLESRLAQTLDQLQNAQN------------------DLAEYNSQLVSLQTQPERAQAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 222 LSSAN-HSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIA---QLVEDVQRLQASLTKLRENSASQISQLEQQL- 296
Cdd:PRK11281 165 LYANSqRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDlqrKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLq 244
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 321400114 297 ------SAKNstLKQLEEKLKGQADYEE---------VKKELNI 325
Cdd:PRK11281 245 llqeaiNSKR--LTLSEKTVQEAQSQDEaariqanplVAQELEI 286
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
16-315 |
1.75e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 16 DLQQLQRELDATATVLANRQDESEQSRKRL-----IEQSREFKKNTP------EDLRKQVAPLLKSfQGEIDALSKRSKE 84
Cdd:COG4913 618 ELAELEEELAEAEERLEALEAELDALQERRealqrLAEYSWDEIDVAsaereiAELEAELERLDAS-SDDLAALEEQLEE 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 85 AEAAFLNVYKRLIDVP------EVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSttsklEEA 158
Cdd:COG4913 697 LEAELEELEEELDELKgeigrlEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR-----ENL 771
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 159 EHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEiemIMTDLERANQ-RAEVAQREAETL-------REQLSSANHS-- 228
Cdd:COG4913 772 EERIDALRARLNRAEEELERAMRAFNREWPAETAD---LDADLESLPEyLALLDRLEEDGLpeyeerfKELLNENSIEfv 848
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 229 LQLASQIQKAP-DVEQAIEVLTRSSLEVE--------LAAKEREiaqlVEDVQRLQASLTKLRENSASQISQLEQqlsAK 299
Cdd:COG4913 849 ADLLSKLRRAIrEIKERIDPLNDSLKRIPfgpgrylrLEARPRP----DPEVREFRQELRAVTSGASLFDEELSE---AR 921
|
330
....*....|....*.
gi 321400114 300 NSTLKQLEEKLKGQAD 315
Cdd:COG4913 922 FAALKRLIERLRSEEE 937
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
12-312 |
1.88e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 12 WKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPL--LKSFQGEIDALSKRSKEAEaaf 89
Cdd:COG5022 875 QRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIarLKKLLNNIDLEEGPSIEYV--- 951
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 90 lnVYKRLIDVPEVtIKALKEKIREYEQTLKNQAETI-----ALEKEQKLQNDFAEKeRKLQETQMSTTSKLEEAEHKVQS 164
Cdd:COG5022 952 --KLPELNKLHEV-ESKLKETSEEYEDLLKKSTILVregnkANSELKNFKKELAEL-SKQYGALQESTKQLKELPVEVAE 1027
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 165 LQTALEktrtelfdlktKYDEETTAKAdeIEMIMTDLERAN-QRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQ 243
Cdd:COG5022 1028 LQSASK-----------IISSESTELS--ILKPLQKLKGLLlLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLK 1094
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 321400114 244 AIEVLTRSSLEVELAAKEReiaqlVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG 312
Cdd:COG5022 1095 TINVKDLEVTNRNLVKPAN-----VLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDG 1158
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
14-298 |
1.94e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.58 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 14 RFDLQQLQRELD-ATATVLANRQD--ESEQSRKRLIEQSREFKKNTpedlrkqvapllKSFQGEIDALSKRSKEAEAAFL 90
Cdd:PRK10929 22 APDEKQITQELEqAKAAKTPAQAEivEALQSALNWLEERKGSLERA------------KQYQQVIDNFPKLSAELRQQLN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 91 NVYKRLIDVPE-VTIKALKEKIREYEQTLKNQAETiaLEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSL---- 165
Cdd:PRK10929 90 NERDEPRSVPPnMSTDALEQEILQVSSQLLEKSRQ--AQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLgtpn 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 166 ----QTALEKTRTELFDLKtkydeettAKADEIEMIMTDL----ERANQRAEVAQREAETLREQLSSANHslQLASQIQK 237
Cdd:PRK10929 168 tplaQAQLTALQAESAALK--------ALVDELELAQLSAnnrqELARLRSELAKKRSQQLDAYLQALRN--QLNSQRQR 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 321400114 238 apDVEQAIEvltrsslEVELAAKE---------------REIAQ-LVEDVQRLQASLTKLREnSASQISQLEQQLSA 298
Cdd:PRK10929 238 --EAERALE-------STELLAEQsgdlpksivaqfkinRELSQaLNQQAQRMDLIASQQRQ-AASQTLQVRQALNT 304
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
44-314 |
2.58e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 44 RLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVykrlidvpEVTIKALKEKIREYEQtlkNQAE 123
Cdd:pfam12128 272 TLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKD--------RSELEALEDQHGAFLD---ADIE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 124 TIALEKEQ--KLQNDFAEKERKLQetqmSTTSKLEEAEHKVQSL-QTALEKTRTELFDLKTKYDEETTAKADEIEMIMTD 200
Cdd:pfam12128 341 TAAADQEQlpSWQSELENLEERLK----ALTGKHQDVTAKYNRRrSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDD 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 201 LERA----NQRAEVAQREAETLREQLSSANHSLQLasQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQL-VEDVQRLQ 275
Cdd:pfam12128 417 LQALeselREQLEAGKLEFNEEEYRLKSRLGELKL--RLNQATATPELLLQLENFDERIERAREEQEAANAeVERLQSEL 494
|
250 260 270
....*....|....*....|....*....|....*....
gi 321400114 276 ASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA 314
Cdd:pfam12128 495 RQARKRRDQASEALRQASRRLEERQSALDELELQLFPQA 533
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
126-308 |
2.81e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 126 ALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALektrtelfdlktKYDEETTAKADEIEMIMTDLERAN 205
Cdd:PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL------------RQQEKIERYQADLEELEERLEEQN 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 206 QRAEVAQREAETLREQLSSANHS-LQLASQIQkapDVEQAIEVLTRSSLE----VELAAKEREIAQL----VEDVQRLQA 276
Cdd:PRK04863 369 EVVEEADEQQEENEARAEAAEEEvDELKSQLA---DYQQALDVQQTRAIQyqqaVQALERAKQLCGLpdltADNAEDWLE 445
|
170 180 190
....*....|....*....|....*....|..
gi 321400114 277 SLTKLRENSASQISQLEQQLSAKNSTLKQLEE 308
Cdd:PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
32-328 |
3.14e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 32 ANRQDESEQSRKRLIEQSREFKKNTPE--DLRKQVAPL------LKSFQGEIDALSKR------SKEAEAAFLNVYKRLI 97
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLREINEISSElpELREELEKLekevkeLEELKEEIEELEKEleslegSKRKLEEKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 98 DVPEVTIKALKEKIREYEQTLKNQAETIALEkeqKLQNDFAEKERKLQETQMSTT----------SKLEEAEHKVQSLQT 167
Cdd:PRK03918 269 EELKKEIEELEEKVKELKELKEKAEEYIKLS---EFYEEYLDELREIEKRLSRLEeeingieeriKELEEKEERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 168 ALEKTRTELFDLKTKYD--EETTAKADEIEMIMTDL-----ERANQRAEVAQREAETLREQLSSANHslQLASQIQKAPD 240
Cdd:PRK03918 346 KLKELEKRLEELEERHElyEEAKAKKEELERLKKRLtgltpEKLEKELEELEKAKEEIEEEISKITA--RIGELKKEIKE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 241 VEQAIEVLTRSSLEVELAAKE--------------REIAQLVEDVQRLQASLTKLRENSASQISQL--EQQLSAKNSTLK 304
Cdd:PRK03918 424 LKKAIEELKKAKGKCPVCGRElteehrkelleeytAELKRIEKELKEIEEKERKLRKELRELEKVLkkESELIKLKELAE 503
|
330 340 350
....*....|....*....|....*....|....*.
gi 321400114 305 QL---EEKLKG---------QADYEEVKKELNILKS 328
Cdd:PRK03918 504 QLkelEEKLKKynleelekkAEEYEKLKEKLIKLKG 539
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
18-237 |
3.39e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 18 QQLQRELDATATVLANRQDESEQSRKRLIEQsREFKKNTPEDLRKQVAPL----------LKSFQGEIDALSKRSKEAEA 87
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKET-IIKNNSEIKDLTNQDSVKeliiknldntRESLETQLKVLSRSINKIKQ 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 88 AFLNVYKRLiDVPEVTIKALKEKIREYEQTLKNQAETIA--LEKEQKLQNDFAEKERKLQETQ-----MSTTSKLEEAEH 160
Cdd:TIGR04523 483 NLEQKQKEL-KSKEKELKKLNEEKKELEEKVKDLTKKISslKEKIEKLESEKKEKESKISDLEdelnkDDFELKKENLEK 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 161 KVQSLQ----------TALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQ----LSSAN 226
Cdd:TIGR04523 562 EIDEKNkeieelkqtqKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIikniKSKKN 641
|
250
....*....|.
gi 321400114 227 HSLQLASQIQK 237
Cdd:TIGR04523 642 KLKQEVKQIKE 652
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
58-204 |
4.23e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 58 EDLRKQVAPLLKSFQGEIDALSKRSKEAEAAfLNVYKRLIDVPEVTIKALKEKIREYEQTL---KNQAETIALEKEQklq 134
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTE-LEDLEKEIKRLELEIEEVEARIKKYEEQLgnvRNNKEYEALQKEI--- 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 321400114 135 nDFAEKERKLQETQMS-TTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERA 204
Cdd:COG1579 99 -ESLKRRISDLEDEILeLMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
94-495 |
4.23e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 94 KRLIDVPEVTIKALKEKI---REYEQTLKNQAETIalEKEQKLQND-FAEKERKLQETQMSTTSKLEEA----EHKVQSL 165
Cdd:pfam15921 270 EQLISEHEVEITGLTEKAssaRSQANSIQSQLEII--QEQARNQNSmYMRQLSDLESTVSQLRSELREAkrmyEDKIEEL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 166 QTALEKTRTELFDLKTKYDE---ETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSL-QLASQIQKAPDV 241
Cdd:pfam15921 348 EKQLVLANSELTEARTERDQfsqESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIdHLRRELDDRNME 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 242 EQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQ--ASLTKLRENSASQISQLEQQLSAKNSTLKQ-----------LEE 308
Cdd:pfam15921 428 VQRLEALLKAMKSECQGQMERQMAAIQGKNESLEkvSSLTAQLESTKEMLRKVVEELTAKKMTLESsertvsdltasLQE 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 309 KLKG----QADYEEVKKELNI-LKSMEFAPSEGAGTQDAAKPLEVLLL---EKNRSL-----QSEN------------AA 363
Cdd:pfam15921 508 KERAieatNAEITKLRSRVDLkLQELQHLKNEGDHLRNVQTECEALKLqmaEKDKVIeilrqQIENmtqlvgqhgrtaGA 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 364 LRISNSDLSGRCAELQVRITEAVATATEQRELIARLEQDLSIIQsIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAPA 443
Cdd:pfam15921 588 MQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLE-LEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSR 666
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 321400114 444 SgalpegQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLR 495
Cdd:pfam15921 667 N------ELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTR 712
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
16-312 |
4.30e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 16 DLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKkntpeDLRKQVApllkSFQGEIDALSKRS---KEAEAAfLNV 92
Cdd:PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVD-----ELKSQLA----DYQQALDVQQTRAiqyQQAVQA-LER 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 93 YKRLIDVPEVTIKALKEKIREYEQTLKnQAETIALEKEQKLQNDFAEKE---------RKL---------QETQMSTTSK 154
Cdd:PRK04863 426 AKQLCGLPDLTADNAEDWLEEFQAKEQ-EATEELLSLEQKLSVAQAAHSqfeqayqlvRKIagevsrseaWDVARELLRR 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 155 LEEAEHKVQSLQTAlektRTELFDLKTKYDEETTAKA-------------DEIEMIMTDLERANQRAEVAQREAETLREQ 221
Cdd:PRK04863 505 LREQRHLAEQLQQL----RMRLSELEQRLRQQQRAERllaefckrlgknlDDEDELEQLQEELEARLESLSESVSEARER 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 222 LSSANHSL-QLASQIQK----APDVEQAIEVLTRSSLEVELAAKERE-IAQLVEDVQRLQASLTKLRENSASQISQLEQQ 295
Cdd:PRK04863 581 RMALRQQLeQLQARIQRlaarAPAWLAAQDALARLREQSGEEFEDSQdVTEYMQQLLERERELTVERDELAARKQALDEE 660
|
330 340
....*....|....*....|....
gi 321400114 296 LS-------AKNSTLKQLEEKLKG 312
Cdd:PRK04863 661 IErlsqpggSEDPRLNALAERFGG 684
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
204-500 |
4.42e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 204 ANQRAEVAQREAETLREQLSSANhSLQLASQIQKA--PDVEQAIEVLTR--------SSLEVELAAKEREIAQLVEDVQR 273
Cdd:PRK11281 27 ARAASNGDLPTEADVQAQLDALN-KQKLLEAEDKLvqQDLEQTLALLDKidrqkeetEQLKQQLAQAPAKLRQAQAELEA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 274 LQASLTK-LRENSASQ-ISQLEQQLSAKNSTLKQLEEKLkgqADY-----------EEVKKEL--NILKSMEFApSEGAG 338
Cdd:PRK11281 106 LKDDNDEeTRETLSTLsLRQLESRLAQTLDQLQNAQNDL---AEYnsqlvslqtqpERAQAALyaNSQRLQQIR-NLLKG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 339 TQDAAKPLEVLLLEKnrsLQSENAALRISNSDlsgRCAELQVrITEAVATATEQREL----IARLEQDLSIIQSIqrpda 414
Cdd:PRK11281 182 GKVGGKALRPSQRVL---LQAEQALLNAQNDL---QRKSLEG-NTQLQDLLQKQRDYltarIQRLEHQLQLLQEA----- 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 415 egAAEHRLEKIPEPIKEATalfygpaapASGALPEGQVDSLLSiissqrerfrarnQELEAENRLAQHTLQALQsELDSL 494
Cdd:PRK11281 250 --INSKRLTLSEKTVQEAQ---------SQDEAARIQANPLVA-------------QELEINLQLSQRLLKATE-KLNTL 304
|
....*.
gi 321400114 495 RADNIK 500
Cdd:PRK11281 305 TQQNLR 310
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
101-395 |
4.72e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.12 E-value: 4.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 101 EVTIKALKEKIREYEQTLKNQA-ETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHK-VQSLQTALEKTRTELFD 178
Cdd:pfam07111 79 EEEVRLLRETSLQQKMRLEAQAmELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQReLEEIQRLHQEQLSSLTQ 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 179 LKTKYDEETTAKADEIEMIMTDLE--RANQRAE--VAQREAETLREQLSSANHSLQ----LASQIQKAPDvEQAIEVLTR 250
Cdd:pfam07111 159 AHEEALSSLTSKAEGLEKSLNSLEtkRAGEAKQlaEAQKEAELLRKQLSKTQEELEaqvtLVESLRKYVG-EQVPPEVHS 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 251 SSLEVELAAKEREIAQLVEDVQRLQAS--LTKLRENSASQISQL-EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILK 327
Cdd:pfam07111 238 QTWELERQELLDTMQHLQEDRADLQATveLLQVRVQSLTHMLALqEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFA 317
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 321400114 328 SMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVritEAVATATEQREL 395
Cdd:pfam07111 318 LMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEV---ERMSAKGLQMEL 382
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
126-523 |
5.56e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 126 ALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALektrtelfdlktkydeettAKADEIEMIMTDLERAN 205
Cdd:COG3096 300 QLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTAL-------------------RQQEKIERYQEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 206 QRAEVAQREAETLREQLSSANHSLQLASQ------IQKApDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQAslt 279
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEevdslkSQLA-DYQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTP--- 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 280 klrENSASQISQLEQQLSAKNSTLKQLEEKLK-GQADYEEVKKELNILKSMefapsEGAGTQDAAKPLEVLLLEKNRSLQ 358
Cdd:COG3096 437 ---ENAEDYLAAFRAKEQQATEEVLELEQKLSvADAARRQFEKAYELVCKI-----AGEVERSQAWQTARELLRRYRSQQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 359 SENA---ALRISNSDLSGRCA----------ELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHR--LE 423
Cdd:COG3096 509 ALAQrlqQLRAQLAELEQRLRqqqnaerlleEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRqqLE 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 424 KIPEPIKE--ATALFYGPAAPASGALPEGQVDSLLSI--ISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRAdni 499
Cdd:COG3096 589 QLRARIKElaARAPAWLAAQDALERLREQSGEALADSqeVTAAMQQLLEREREATVERDELAARKQALESQIERLSQ--- 665
|
410 420
....*....|....*....|....
gi 321400114 500 klfekikflqsypgrGSGSDDTEL 523
Cdd:COG3096 666 ---------------PGGAEDPRL 674
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
34-330 |
6.99e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.34 E-value: 6.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 34 RQDESEQSRKRLIEQSREFKKNTPEDlRKQVAPLLKSFQGEIDALS-----------KRSKEAEAAFLNVYKRLID-VPE 101
Cdd:pfam17380 289 QQEKFEKMEQERLRQEKEEKAREVER-RRKLEEAEKARQAEMDRQAaiyaeqermamERERELERIRQEERKRELErIRQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 102 VTIKALKEKIRE-----YEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRtel 176
Cdd:pfam17380 368 EEIAMEISRMRElerlqMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEER--- 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 177 fdlktkydeettakADEIEMI-MTDLERANQRAEVAQREAETLREQLssanhslqlasQIQKAPDVEQAIEVLTRSSLEV 255
Cdd:pfam17380 445 --------------AREMERVrLEEQERQQQVERLRQQEEERKRKKL-----------ELEKEKRDRKRAEEQRRKILEK 499
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 321400114 256 ELAAKEREIAQlvedVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQ--LEEKLKGQADYEEVKKELNILKSME 330
Cdd:pfam17380 500 ELEERKQAMIE----EERKRKLLEKEMEERQKAIYEEERRREAEEERRKQqeMEERRRIQEQMRKATEERSRLEAME 572
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
101-494 |
7.76e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.37 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 101 EVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSttskLEEAEHKVQSLQTALEKTRTELFDLK 180
Cdd:COG4717 108 EAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE----LRELEEELEELEAELAELQEELEELL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 181 TKYDEETTAK----ADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVE 256
Cdd:COG4717 184 EQLSLATEEElqdlAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 257 LAAKEREIAQLVEDVQRLQASLT------KLRENSASQISQLEQQLSAKNSTLKQLEEK-------LKGQADYEEVKKEL 323
Cdd:COG4717 264 LGGSLLSLILTIAGVLFLVLGLLallfllLAREKASLGKEAEELQALPALEELEEEELEellaalgLPPDLSPEELLELL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 324 NILKSMEFAPSEGAGTQDAAKpLEVLLLEKNRSLQSENAAlriSNSDLSGRCAELQvritEAVATATEQRELIARLEQDL 403
Cdd:COG4717 344 DRIEELQELLREAEELEEELQ-LEELEQEIAALLAEAGVE---DEEELRAALEQAE----EYQELKEELEELEEQLEELL 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 404 SIIQSIQRPDAEGAAEHRLEKIPEPIKEAtalfygpaapasgalpEGQVDSLLsiisSQRERFRARNQELEAENRLAQ-- 481
Cdd:COG4717 416 GELEELLEALDEEELEEELEELEEELEEL----------------EEELEELR----EELAELEAELEQLEEDGELAEll 475
|
410
....*....|...
gi 321400114 482 HTLQALQSELDSL 494
Cdd:COG4717 476 QELEELKAELREL 488
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
13-364 |
8.76e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.26 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 13 KRFD-LQQLQRELDATATVLANRQDESE-----QSRKRLIEQSREFKKNTPEDLRKQVAPL------LKSFQGEIDALSK 80
Cdd:TIGR00606 173 QKFDeIFSATRYIKALETLRQVRQTQGQkvqehQMELKYLKQYKEKACEIRDQITSKEAQLessreiVKSYENELDPLKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 81 RSKEAEAAFLNVYKRlidvpEVTIKALKEKireyeqtlKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEH 160
Cdd:TIGR00606 253 RLKEIEHNLSKIMKL-----DNEIKALKSR--------KKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKER 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 161 KVQSLQTALEKTRTELFDLKTKYDEETTAKADEieMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPD 240
Cdd:TIGR00606 320 ELVDCQRELEKLNKERRLLNQEKTELLVEQGRL--QLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHT 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 321400114 241 VE---QAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG--QAD 315
Cdd:TIGR00606 398 LVierQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRilELD 477
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 321400114 316 YEEVKKELNILKSMEFAPSEGAGTQDAA-KPLEVLLLEKNRSLQSENAAL 364
Cdd:TIGR00606 478 QELRKAERELSKAEKNSLTETLKKEVKSlQNEKADLDRKLRKLDQEMEQL 527
|
|
| |
