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Conserved domains on  [gi|320089550|ref|NP_001188480|]
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complement factor H-related protein 4 isoform 2 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 338-576 6.83e-16

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 77.77  E-value: 6.83e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 338 DIEIENGFISESSSIYILNKEIQYKCKPGYATadgNSSGSI--TCLQNGWSAQPICIKF-CDMPV-FENSRAKSNGMRFK 413
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGYRK---QKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 414 lhDTLDYECYDGYEI-----SYGN--TTGSIVCGEDGwshfPTCynSSEKCGPPPPISNGDTTSFLlKVYVPQSRVEYQC 486
Cdd:PHA02927 106 --SSITYSCNSGYQLigeskSYCElgSTGSMVWNPEA----PIC--ESVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSC 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 487 QSYYELQGSNYVTCSNGEWSEPP-----RCIHPCIiteenmnkNNIQLkgKSDIKYYAKTGDTIEFMCKLGYNANTSVLS 561
Cdd:PHA02927 177 NSGYSLIGNSGVLCSGGEWSDPPtcqivKCPHPTI--------SNGYL--SSGFKRSYSYNDNVDFKCKYGYKLSGSSSS 246

                        250
                 ....*....|....*
gi 320089550 562 FQAVCREGIVEYPRC 576
Cdd:PHA02927 247 TCSPGNTWQPELPKC 261
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 91-280 4.15e-13

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 69.68  E-value: 4.15e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550  91 DVEIENGFISESSSIYILNEETQYNCKPGYataEGNSSGSI--TCLQNGWSTQPICIKF-CDMPV-FENSRAKSNGMWFK 166
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGY---RKQKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 167 lhDTLDYECYDGYESsYGNTTDSIVCGEDG---WS-HLPTCynSSENCGPPPPISNGDTTSFpQKVYLPWSRVEYQCQSY 242
Cdd:PHA02927 106 --SSITYSCNSGYQL-IGESKSYCELGSTGsmvWNpEAPIC--ESVKCQSPPSISNGRHNGY-EDFYTDGSVVTYSCNSG 179

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 320089550 243 YELQGSKYVTCSNGDWSEPPRCISMKpCEFPEIQHGHL 280
Cdd:PHA02927 180 YSLIGNSGVLCSGGEWSDPPTCQIVK-CPHPTISNGYL 216
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 338-576 6.83e-16

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 77.77  E-value: 6.83e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 338 DIEIENGFISESSSIYILNKEIQYKCKPGYATadgNSSGSI--TCLQNGWSAQPICIKF-CDMPV-FENSRAKSNGMRFK 413
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGYRK---QKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 414 lhDTLDYECYDGYEI-----SYGN--TTGSIVCGEDGwshfPTCynSSEKCGPPPPISNGDTTSFLlKVYVPQSRVEYQC 486
Cdd:PHA02927 106 --SSITYSCNSGYQLigeskSYCElgSTGSMVWNPEA----PIC--ESVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSC 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 487 QSYYELQGSNYVTCSNGEWSEPP-----RCIHPCIiteenmnkNNIQLkgKSDIKYYAKTGDTIEFMCKLGYNANTSVLS 561
Cdd:PHA02927 177 NSGYSLIGNSGVLCSGGEWSDPPtcqivKCPHPTI--------SNGYL--SSGFKRSYSYNDNVDFKCKYGYKLSGSSSS 246

                        250
                 ....*....|....*
gi 320089550 562 FQAVCREGIVEYPRC 576
Cdd:PHA02927 247 TCSPGNTWQPELPKC 261
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 91-280 4.15e-13

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 69.68  E-value: 4.15e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550  91 DVEIENGFISESSSIYILNEETQYNCKPGYataEGNSSGSI--TCLQNGWSTQPICIKF-CDMPV-FENSRAKSNGMWFK 166
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGY---RKQKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 167 lhDTLDYECYDGYESsYGNTTDSIVCGEDG---WS-HLPTCynSSENCGPPPPISNGDTTSFpQKVYLPWSRVEYQCQSY 242
Cdd:PHA02927 106 --SSITYSCNSGYQL-IGESKSYCELGSTGsmvWNpEAPIC--ESVKCQSPPSISNGRHNGY-EDFYTDGSVVTYSCNSG 179

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 320089550 243 YELQGSKYVTCSNGDWSEPPRCISMKpCEFPEIQHGHL 280
Cdd:PHA02927 180 YSLIGNSGVLCSGGEWSDPPTCQIVK-CPHPTISNGYL 216
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 457-512 7.23e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 54.78  E-value: 7.23e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 320089550 457 CGPPPPISNGDTTSFLlKVYVPQSRVEYQCQSYYELQGSNYVTC-SNGEWS-EPPRCI 512
Cdd:cd00033    1 CPPPPVPENGTVTGSK-GSYSYGSTVTYSCNEGYTLVGSSTITCtENGGWSpPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 210-265 3.05e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.24  E-value: 3.05e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 320089550 210 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTC-SNGDWS-EPPRCI 265
Cdd:cd00033    1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCtENGGWSpPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 210-264 2.20e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.91  E-value: 2.20e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550   210 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTC-SNGDWS-EPPRC 264
Cdd:smart00032   1 CPPPPDIENGTVTS-SSGTYSYGDTVTYSCDPGYTLIGSSTITClENGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
457-511 4.33e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.11  E-value: 4.33e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550  457 CGPPPPISNGDTTSfLLKVYVPQSRVEYQCQSYYELQGSNYVTCS-NGEWS-EPPRC 511
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 457-511 8.78e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.98  E-value: 8.78e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550   457 CGPPPPISNGDTTSFLlKVYVPQSRVEYQCQSYYELQGSNYVTC-SNGEWS-EPPRC 511
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITClENGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
210-264 9.53e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 43.26  E-value: 9.53e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550  210 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTCS-NGDWS-EPPRC 264
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 338-576 6.83e-16

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 77.77  E-value: 6.83e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 338 DIEIENGFISESSSIYILNKEIQYKCKPGYATadgNSSGSI--TCLQNGWSAQPICIKF-CDMPV-FENSRAKSNGMRFK 413
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGYRK---QKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 414 lhDTLDYECYDGYEI-----SYGN--TTGSIVCGEDGwshfPTCynSSEKCGPPPPISNGDTTSFLlKVYVPQSRVEYQC 486
Cdd:PHA02927 106 --SSITYSCNSGYQLigeskSYCElgSTGSMVWNPEA----PIC--ESVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSC 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 487 QSYYELQGSNYVTCSNGEWSEPP-----RCIHPCIiteenmnkNNIQLkgKSDIKYYAKTGDTIEFMCKLGYNANTSVLS 561
Cdd:PHA02927 177 NSGYSLIGNSGVLCSGGEWSDPPtcqivKCPHPTI--------SNGYL--SSGFKRSYSYNDNVDFKCKYGYKLSGSSSS 246

                        250
                 ....*....|....*
gi 320089550 562 FQAVCREGIVEYPRC 576
Cdd:PHA02927 247 TCSPGNTWQPELPKC 261
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 91-280 4.15e-13

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 69.68  E-value: 4.15e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550  91 DVEIENGFISESSSIYILNEETQYNCKPGYataEGNSSGSI--TCLQNGWSTQPICIKF-CDMPV-FENSRAKSNGMWFK 166
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGY---RKQKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 167 lhDTLDYECYDGYESsYGNTTDSIVCGEDG---WS-HLPTCynSSENCGPPPPISNGDTTSFpQKVYLPWSRVEYQCQSY 242
Cdd:PHA02927 106 --SSITYSCNSGYQL-IGESKSYCELGSTGsmvWNpEAPIC--ESVKCQSPPSISNGRHNGY-EDFYTDGSVVTYSCNSG 179

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 320089550 243 YELQGSKYVTCSNGDWSEPPRCISMKpCEFPEIQHGHL 280
Cdd:PHA02927 180 YSLIGNSGVLCSGGEWSDPPTCQIVK-CPHPTISNGYL 216
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 316-512 5.21e-12

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 66.21  E-value: 5.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 316 YIHCTQDGWLPTVPCLRTCSKSDIEIENGFISESSSIYilNKEIQYKCKPGY-------ATADGNSSGSITclqngWSAQ 388
Cdd:PHA02927  67 YAKCTGTGWTLFNQCIKRRCPSPRDIDNGQLDIGGVDF--GSSITYSCNSGYqligeskSYCELGSTGSMV-----WNPE 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 389 -PIC--IKFCDMPVFENSRAKSNGMRFKLHDTLDYECYDGYEIsYGNTtgSIVCGEDGWSHFPTCynSSEKCgPPPPISN 465
Cdd:PHA02927 140 aPICesVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSL-IGNS--GVLCSGGEWSDPPTC--QIVKC-PHPTISN 213

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 320089550 466 GDTTSFLLKVYVPQSRVEYQCQSYYELQGSNYVTCSNGEWSEP--PRCI 512
Cdd:PHA02927 214 GYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPelPKCV 262
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 69-265 1.03e-11

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 65.44  E-value: 1.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550  69 YIHCTQDGWSPTVPCLRTCSKSDVEIENGFISESSSIYilNEETQYNCKPGY-------ATAEGNSSGSITclqngWSTQ 141
Cdd:PHA02927  67 YAKCTGTGWTLFNQCIKRRCPSPRDIDNGQLDIGGVDF--GSSITYSCNSGYqligeskSYCELGSTGSMV-----WNPE 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 142 -PIC--IKFCDMPVFENSRAKSNGMWFKLHDTLDYECYDGYeSSYGNTtdSIVCGEDGWSHLPTCynSSENCgPPPPISN 218
Cdd:PHA02927 140 aPICesVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGY-SLIGNS--GVLCSGGEWSDPPTC--QIVKC-PHPTISN 213

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 320089550 219 GDTTSFPQKVYLPWSRVEYQCQSYYELQGSKYVTCSNGDWSEP--PRCI 265
Cdd:PHA02927 214 GYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPelPKCV 262
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 457-512 7.23e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 54.78  E-value: 7.23e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 320089550 457 CGPPPPISNGDTTSFLlKVYVPQSRVEYQCQSYYELQGSNYVTC-SNGEWS-EPPRCI 512
Cdd:cd00033    1 CPPPPVPENGTVTGSK-GSYSYGSTVTYSCNEGYTLVGSSTITCtENGGWSpPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 210-265 3.05e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.24  E-value: 3.05e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 320089550 210 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTC-SNGDWS-EPPRCI 265
Cdd:cd00033    1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCtENGGWSpPPPTCE 57
PHA02639 PHA02639
EEV host range protein; Provisional
 87-271 1.46e-07

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 53.13  E-value: 1.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550  87 CSKSDvEIENGFISESSSIYILNEETQYNCKPGYATAEGNSSGSITCLQNG-WSTQ-PIC-IKFC-DMPVFENSRAKSNG 162
Cdd:PHA02639  22 CDKPD-DISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAiWSNKaPFCmLKECnDPPSIINGKIYNKR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 163 MWFKLHDTLDYECYDGYESSYGNT-TDSIVCGED-GWS-HLPTCynSSENCgPPPPISNGDTTSFP-QKVYLPWSRVEYQ 238
Cdd:PHA02639 101 EMYKVGDEIYYVCNEHKGVQYSLVgNEKITCIQDkSWKpDPPIC--KMINC-RFPALQNGYINGIPsNKKFYYKTRVGFS 177

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 320089550 239 CQSYYELQGSKYVTCS-NGDW-SEPPRCISMKPCE 271
Cdd:PHA02639 178 CKSGFDLVGEKYSTCNiNATWfPSIPTCVRNKPID 212
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 210-264 2.20e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.91  E-value: 2.20e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550   210 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTC-SNGDWS-EPPRC 264
Cdd:smart00032   1 CPPPPDIENGTVTS-SSGTYSYGDTVTYSCDPGYTLIGSSTITClENGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
457-511 4.33e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.11  E-value: 4.33e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550  457 CGPPPPISNGDTTSfLLKVYVPQSRVEYQCQSYYELQGSNYVTCS-NGEWS-EPPRC 511
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 457-511 8.78e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.98  E-value: 8.78e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550   457 CGPPPPISNGDTTSFLlKVYVPQSRVEYQCQSYYELQGSNYVTC-SNGEWS-EPPRC 511
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITClENGTWSpPPPTC 56
PHA02831 PHA02831
EEV host range protein; Provisional
 223-367 2.70e-06

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 49.22  E-value: 2.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 223 SFPQKVYLPWSRVEYQCQSYYElqgSKYVTCSNGDWSEPPRCISMKPCEFP-EIQHGhlYYENTRRPYfpvATGQSYSYY 301
Cdd:PHA02831  34 SYENKVYEENENLEYKCNNNFD---KVFVTCNNGSWSTKNMCIGKRNCKDPvTILNG--YIKNKKDQY---SFGDSVTYA 105

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550 302 CDQNFVTP-SGSYWDYIHCTQDGWLPTVPCLRTCSKSDIEIENGFISESSSIYILNKEIQYKCKPGY 367
Cdd:PHA02831 106 CKVNKLEKySIVGNETVKCINKQWVPKYPVCKLIRCKYPALQNGFLNVFEKKFYYGDIVNFKCKKGF 172
PHA02639 PHA02639
EEV host range protein; Provisional
 334-512 9.10e-06

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 47.74  E-value: 9.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 334 CSKSDiEIENGFISESSSIYILNKEIQYKCKPGYATADGNSSGSITCLQNG-WSAQ-PIC-IKFC-DMPVFENSRAKSNG 409
Cdd:PHA02639  22 CDKPD-DISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAiWSNKaPFCmLKECnDPPSIINGKIYNKR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 410 MRFKLHDTLDYECYDGYEISY---GNTtgSIVCGEDgwshfptcynSSEKCGPP---------PPISNGDTTSFLL-KVY 476
Cdd:PHA02639 101 EMYKVGDEIYYVCNEHKGVQYslvGNE--KITCIQD----------KSWKPDPPickmincrfPALQNGYINGIPSnKKF 168

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 320089550 477 VPQSRVEYQCQSYYELQGSNYVTCS-NGEW-SEPPRCI 512
Cdd:PHA02639 169 YYKTRVGFSCKSGFDLVGEKYSTCNiNATWfPSIPTCV 206
Sushi pfam00084
Sushi repeat (SCR repeat);
210-264 9.53e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 43.26  E-value: 9.53e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550  210 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTCS-NGDWS-EPPRC 264
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 203-350 7.78e-05

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 44.16  E-value: 7.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 203 CYNSSENCGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSY-----YELQGSKYVTCS-NGDWS-EPPRCiSMKPCEFPEI 275
Cdd:PHA02817  17 SLCDLNKCCYPPSIKNGYIYN-KKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEkDGKWNkEFPVC-KIIRCRFPAL 94

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320089550 276 QHGHLY-YENTRRPYFPvatgQSYSYYCDQNFVTPSGSYwdYIHCTQDGWLPTVPclrTCSKSDIEIENGFISESS 350
Cdd:PHA02817  95 QNGFVNgIPDSKKFYYE----SEVSFSCKPGFVLIGTKY--SVCGINSSWIPKVP---ICSRDNITYNKIYINKVN 161
PHA02831 PHA02831
EEV host range protein; Provisional
 83-265 1.14e-04

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 44.21  E-value: 1.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550  83 CLRTCSKSDVEIENgFISESSSIYILNEETQYNCKPGYataegnSSGSITCLQNGWSTQPICI--KFCDMPV-FENSRAK 159
Cdd:PHA02831  18 CICVFNKNDAKYSN-VDSYENKVYEENENLEYKCNNNF------DKVFVTCNNGSWSTKNMCIgkRNCKDPVtILNGYIK 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 160 SNGMWFKLHDTLDYECYDGYESSY---GNTTdsIVCGEDGW-SHLPTCynSSENCgPPPPISNGDTTSFPQKVYLPwSRV 235
Cdd:PHA02831  91 NKKDQYSFGDSVTYACKVNKLEKYsivGNET--VKCINKQWvPKYPVC--KLIRC-KYPALQNGFLNVFEKKFYYG-DIV 164

                        170       180       190
                 ....*....|....*....|....*....|..
gi 320089550 236 EYQCQSYYELQGSKYVTCS-NGDW-SEPPRCI 265
Cdd:PHA02831 165 NFKCKKGFILLGSSVSTCDiNSIWyPGIPKCV 196
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 148-393 1.82e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 43.92  E-value: 1.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 148 CDMPVFENSRAKSNGMWFKLHDTLDYECYDGYESSYGNTtdsiVCGEDGWSHLPTCYNSSEncgppppISNGDTTSFPQK 227
Cdd:PHA02954  21 CTVPTMNNAKLTSTETSFNDKQKVTFTCDSGYYSLDPNA----VCETDKWKYENPCKKMCT-------VSDYVSELYDKP 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 228 VYLPWSRVEYQCQSYyelqgSKYVTCS----NGDWSEPPRCISMKpCEFPEIQHGHLyyENTRRPYfpvATGQSYSYYCD 303
Cdd:PHA02954  90 LYEVNSTITLICKDE-----TKYFRCEekngNTSWNDTVTCPNAE-CQPLQLEHGSC--QPVKEKY---SFGEHITINCD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 304 QNFVTPSGSywdYIHCTQDGWLPTVPCLRTCSKSdiEIENGFISESSsiYILNKEIQYKCKPGYATADGNSSgsiTCLQN 383
Cdd:PHA02954 159 VGYEVIGAS---YISCTANSWNVIPSCQQKCDIP--SLSNGLISGST--FSIGGVIHLSCKSGFTLTGSPSS---TCIDG 228

                        250
                 ....*....|.
gi 320089550 384 GWS-AQPICIK 393
Cdd:PHA02954 229 KWNpVLPICVR 239
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 340-392 2.89e-04

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 38.98  E-value: 2.89e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 320089550 340 EIENGFISESSSIYILNKEIQYKCKPGYATadgNSSGSITCLQNG-WS-AQPICI 392
Cdd:cd00033    6 VPENGTVTGSKGSYSYGSTVTYSCNEGYTL---VGSSTITCTENGgWSpPPPTCE 57
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 77-212 3.00e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 43.15  E-value: 3.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550  77 WSPTVPCLRTCSKSdVEIENGFISESSSIYILNEETQYNCKPGYataEGNSSGSITCLQNGWSTQPICIKFCDMPVFENS 156
Cdd:PHA02954 119 WNDTVTCPNAECQP-LQLEHGSCQPVKEKYSFGEHITINCDVGY---EVIGASYISCTANSWNVIPSCQQKCDIPSLSNG 194

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550 157 RAksNGMWFKLHDTLDYECYDGYESSygnTTDSIVCGEDGWSH-LPTCYNSSENCGP 212
Cdd:PHA02954 195 LI--SGSTFSIGGVIHLSCKSGFTLT---GSPSSTCIDGKWNPvLPICVRSNEEFDP 246
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 93-145 6.54e-04

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 38.21  E-value: 6.54e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 320089550  93 EIENGFISESSSIYILNEETQYNCKPGYATaegNSSGSITCLQNG-WS-TQPICI 145
Cdd:cd00033    6 VPENGTVTGSKGSYSYGSTVTYSCNEGYTL---VGSSTITCTENGgWSpPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 340-391 8.37e-04

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 37.89  E-value: 8.37e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 320089550   340 EIENGFISESSSIYILNKEIQYKCKPGYATadgNSSGSITCLQNG-WS-AQPIC 391
Cdd:smart00032   6 DIENGTVTSSSGTYSYGDTVTYSCDPGYTL---IGSSTITCLENGtWSpPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 93-144 1.19e-03

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 37.12  E-value: 1.19e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 320089550    93 EIENGFISESSSIYILNEETQYNCKPGYataEGNSSGSITCLQNG-WS-TQPIC 144
Cdd:smart00032   6 DIENGTVTSSSGTYSYGDTVTYSCDPGY---TLIGSSTITCLENGtWSpPPPTC 56
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 296-512 1.65e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 40.84  E-value: 1.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 296 QSYSYYCDQNFVTPSGSywdyIHCTQDGWLPTVPCLRTCSKSDI--EIENGFISESSSIYIL--NKEIQY-KCKpgyaTA 370
Cdd:PHA02954  42 QKVTFTCDSGYYSLDPN----AVCETDKWKYENPCKKMCTVSDYvsELYDKPLYEVNSTITLicKDETKYfRCE----EK 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 371 DGNSSGSITCLQNGWSAQPICIkfcdmpvfENSRAKSNGMRFKLHDTLDYECYDGYEISygnTTGSIVCGEDGWSHFPTC 450
Cdd:PHA02954 114 NGNTSWNDTVTCPNAECQPLQL--------EHGSCQPVKEKYSFGEHITINCDVGYEVI---GASYISCTANSWNVIPSC 182

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320089550 451 ynsSEKCGPPPpISNGDTTSFLLKVyvpQSRVEYQCQSYYELQGSNYVTCSNGEWSEP-PRCI 512
Cdd:PHA02954 183 ---QQKCDIPS-LSNGLISGSTFSI---GGVIHLSCKSGFTLTGSPSSTCIDGKWNPVlPICV 238
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 324-459 3.10e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 40.07  E-value: 3.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 324 WLPTVPCLRTCSKSdIEIENGFISESSSIYILNKEIQYKCKPGYATAdgnSSGSITCLQNGWSAQPICIKFCDMPVFENS 403
Cdd:PHA02954 119 WNDTVTCPNAECQP-LQLEHGSCQPVKEKYSFGEHITINCDVGYEVI---GASYISCTANSWNVIPSCQQKCDIPSLSNG 194

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550 404 RAksNGMRFKLHDTLDYECYDGYEISygnTTGSIVCGEDGWSH-FPTCYNSSEKCGP 459
Cdd:PHA02954 195 LI--SGSTFSIGGVIHLSCKSGFTLT---GSPSSTCIDGKWNPvLPICVRSNEEFDP 246
PHA02639 PHA02639
EEV host range protein; Provisional
 208-339 4.22e-03

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 39.65  E-value: 4.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 208 ENCGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSY----YELQGSKYVTCS-NGDWSEPPRCISMKPCEFPEIQHGHLY- 281
Cdd:PHA02639  83 KECNDPPSIINGKIYN-KREMYKVGDEIYYVCNEHkgvqYSLVGNEKITCIqDKSWKPDPPICKMINCRFPALQNGYINg 161

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 282 YENTRRPYFPVATGqsysYYCDQNFVTPSGSYWDyihCTQDG-WLPTVP-CLRTCSKSDI 339
Cdd:PHA02639 162 IPSNKKFYYKTRVG----FSCKSGFDLVGEKYST---CNINAtWFPSIPtCVRNKPIDDI 214
PHA02831 PHA02831
EEV host range protein; Provisional
 470-577 5.32e-03

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 39.21  E-value: 5.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 470 SFLLKVYVPQSRVEYQCQSYYElqgSNYVTCSNGEWSEPPRCIHPCIITEENMNKNNiQLKGKSDiKYyaKTGDTIEFMC 549
Cdd:PHA02831  34 SYENKVYEENENLEYKCNNNFD---KVFVTCNNGSWSTKNMCIGKRNCKDPVTILNG-YIKNKKD-QY--SFGDSVTYAC 106

                         90       100       110
                 ....*....|....*....|....*....|.
gi 320089550 550 KLGYNANTSVLSFQAV-CREG--IVEYPRCE 577
Cdd:PHA02831 107 KVNKLEKYSIVGNETVkCINKqwVPKYPVCK 137
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 49-278 6.79e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 38.91  E-value: 6.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550  49 QSYSYYCDQNFVTPSGSywdyIHCTQDGWSPTVPCLRTCSKSDV--EIENGFISESSSIYIL--NEETQY-NCKpgyaTA 123
Cdd:PHA02954  42 QKVTFTCDSGYYSLDPN----AVCETDKWKYENPCKKMCTVSDYvsELYDKPLYEVNSTITLicKDETKYfRCE----EK 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 124 EGNSSGSITCLQNGWSTQPICIKFCD-MPVFENsraksngmwFKLHDTLDYECYDGYE---SSYgnttdsIVCGEDGWSH 199
Cdd:PHA02954 114 NGNTSWNDTVTCPNAECQPLQLEHGScQPVKEK---------YSFGEHITINCDVGYEvigASY------ISCTANSWNV 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 200 LPTCYNSSENCGPPPPISNGDTTSFPQKVYLpwsrveyQCQSYYELQGSKYVTCSNGDWSEP-PRCISMKPcEFPEIQHG 278
Cdd:PHA02954 179 IPSCQQKCDIPSLSNGLISGSTFSIGGVIHL-------SCKSGFTLTGSPSSTCIDGKWNPVlPICVRSNE-EFDPVDDG 250
PHA02817 PHA02817
EEV Host range protein; Provisional
 264-394 6.99e-03

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 38.38  E-value: 6.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089550 264 CISMKPCEFPEIQHGHLYyeNTRRPYfpvATGQSYSYYCDQNFVTPSGSYW--DYIHCTQDG-WLPTVPCLRTCSKSDIE 340
Cdd:PHA02817  19 CDLNKCCYPPSIKNGYIY--NKKTEY---NIGSNVTFFCGNNTRGVRYTLVgeKNIICEKDGkWNKEFPVCKIIRCRFPA 93

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089550 341 IENGFIS--ESSSIYILNKEIQYKCKPGYATAdgNSSGSITCLQNGWSAQ-PICIKF 394
Cdd:PHA02817  94 LQNGFVNgiPDSKKFYYESEVSFSCKPGFVLI--GTKYSVCGINSSWIPKvPICSRD 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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