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Conserved domains on  [gi|319918866|ref|NP_001188404|]
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UPF0711 protein C18orf21 isoform b [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4674 super family cl24326
Domain of unknown function (DUF4674); This family of proteins is found in eukaryotes. Proteins ...
 1-122 3.49e-39

Domain of unknown function (DUF4674); This family of proteins is found in eukaryotes. Proteins in this family are typically between 126 and 221 amino acids in length.


The actual alignment was detected with superfamily member pfam15719:

Pssm-ID: 464823  Cd Length: 191  Bit Score: 130.29  E-value: 3.49e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918866    1 MVKKFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRT------ANPNHDMSGSKGKSPASV 74
Cdd:pfam15719  64 ILKKYKNSKSVLLITCKSCNKTTRHPGKSRSFLTALKSNPSTPQSRSSLKTPDRKTksskknKPTPVSKSNSKGKSPALT 143

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 319918866   75 FRTPTSGQSVSTCSSKNTSKTKKHFSQLKMLLSQNESQKIPKVDFRNF 122
Cdd:pfam15719 144 FRTPTSGQSTPSSSSKPGSKKKFHFSQLKRLLKLEESQKTPKGDLRSF 191
 
Name Accession Description Interval E-value
DUF4674 pfam15719
Domain of unknown function (DUF4674); This family of proteins is found in eukaryotes. Proteins ...
 1-122 3.49e-39

Domain of unknown function (DUF4674); This family of proteins is found in eukaryotes. Proteins in this family are typically between 126 and 221 amino acids in length.


Pssm-ID: 464823  Cd Length: 191  Bit Score: 130.29  E-value: 3.49e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918866    1 MVKKFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRT------ANPNHDMSGSKGKSPASV 74
Cdd:pfam15719  64 ILKKYKNSKSVLLITCKSCNKTTRHPGKSRSFLTALKSNPSTPQSRSSLKTPDRKTksskknKPTPVSKSNSKGKSPALT 143

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 319918866   75 FRTPTSGQSVSTCSSKNTSKTKKHFSQLKMLLSQNESQKIPKVDFRNF 122
Cdd:pfam15719 144 FRTPTSGQSTPSSSSKPGSKKKFHFSQLKRLLKLEESQKTPKGDLRSF 191
 
Name Accession Description Interval E-value
DUF4674 pfam15719
Domain of unknown function (DUF4674); This family of proteins is found in eukaryotes. Proteins ...
 1-122 3.49e-39

Domain of unknown function (DUF4674); This family of proteins is found in eukaryotes. Proteins in this family are typically between 126 and 221 amino acids in length.


Pssm-ID: 464823  Cd Length: 191  Bit Score: 130.29  E-value: 3.49e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918866    1 MVKKFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRT------ANPNHDMSGSKGKSPASV 74
Cdd:pfam15719  64 ILKKYKNSKSVLLITCKSCNKTTRHPGKSRSFLTALKSNPSTPQSRSSLKTPDRKTksskknKPTPVSKSNSKGKSPALT 143

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 319918866   75 FRTPTSGQSVSTCSSKNTSKTKKHFSQLKMLLSQNESQKIPKVDFRNF 122
Cdd:pfam15719 144 FRTPTSGQSTPSSSSKPGSKKKFHFSQLKRLLKLEESQKTPKGDLRSF 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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