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Conserved domains on  [gi|300795381|ref|NP_001178920|]
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chemokine-like protein TAFA-5 precursor [Rattus norvegicus]

Protein Classification

chemokine-like protein TAFA( domain architecture ID 10572247)

chemokine-like protein TAFA is a brain-specific secreted protein, similar to human chemokine-like protein TAFA-1, a regulatory factor that is involved in the modulation of neural stem-cell proliferation and differentiation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TAFA pfam12020
TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. ...
 42-131 3.32e-45

TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. These proteins are found in vertebrates. Proteins in this family are typically between 94 to 133 amino acids in length and contain a number of conserved cysteines.


:

Pssm-ID: 432266  Cd Length: 89  Bit Score: 141.88  E-value: 3.32e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795381   42 AGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTq 121
Cdd:pfam12020   1 AGTCEVIALDRCCNRNRIEERSQTARCSCFPGQVAGTTRAKPSCVDASIVLRKWWCDMEPCLDGEECKLLPDRSGWSCS- 79

                          90
                  ....*....|
gi 300795381  122 PGGRIKTTTV 131
Cdd:pfam12020  80 SGGRVKTTKV 89
 
Name Accession Description Interval E-value
TAFA pfam12020
TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. ...
 42-131 3.32e-45

TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. These proteins are found in vertebrates. Proteins in this family are typically between 94 to 133 amino acids in length and contain a number of conserved cysteines.


Pssm-ID: 432266  Cd Length: 89  Bit Score: 141.88  E-value: 3.32e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795381   42 AGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTq 121
Cdd:pfam12020   1 AGTCEVIALDRCCNRNRIEERSQTARCSCFPGQVAGTTRAKPSCVDASIVLRKWWCDMEPCLDGEECKLLPDRSGWSCS- 79

                          90
                  ....*....|
gi 300795381  122 PGGRIKTTTV 131
Cdd:pfam12020  80 SGGRVKTTKV 89
 
Name Accession Description Interval E-value
TAFA pfam12020
TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. ...
 42-131 3.32e-45

TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. These proteins are found in vertebrates. Proteins in this family are typically between 94 to 133 amino acids in length and contain a number of conserved cysteines.


Pssm-ID: 432266  Cd Length: 89  Bit Score: 141.88  E-value: 3.32e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795381   42 AGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTq 121
Cdd:pfam12020   1 AGTCEVIALDRCCNRNRIEERSQTARCSCFPGQVAGTTRAKPSCVDASIVLRKWWCDMEPCLDGEECKLLPDRSGWSCS- 79

                          90
                  ....*....|
gi 300795381  122 PGGRIKTTTV 131
Cdd:pfam12020  80 SGGRVKTTKV 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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