|
Name |
Accession |
Description |
Interval |
E-value |
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
25-340 |
0e+00 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 574.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 25 ISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILTEsrsVARLecnsVILVYCTlrlsgSSDS 104
Cdd:TIGR02239 1 IEKLEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAE---AAKL----VPMGFTT-----ATEF 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 105 PASASRVVGTT-----------GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL 173
Cdd:TIGR02239 69 HQRRQEVIQLTtgskeldkllgGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 174 AVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRML 253
Cdd:TIGR02239 149 AIAERYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 254 LRLADEFGVAVVITNQVVAQVDGAA-MFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINA 332
Cdd:TIGR02239 229 QRLADEFGVAVVITNQVVAQVDGAGsMFAGDPKKPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAMFAIYE 308
|
....*...
gi 256017143 333 DGVGDAKD 340
Cdd:TIGR02239 309 DGIGDPKE 316
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
4-340 |
0e+00 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 553.07 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 4 QMQLEANADTSVEEESfGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILTESRSVAR 83
Cdd:PTZ00035 3 ESQNEQQEEEEEEEAE-GFQEIEKLQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 84 LE-CNSVILVYC---TLRLS-GSSDspasASRVVGttGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 158
Cdd:PTZ00035 82 MGfISATEYLEArknIIRITtGSTQ----LDKLLG--GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 159 MYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGE 238
Cdd:PTZ00035 156 LYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 239 LSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDS 318
Cdd:PTZ00035 236 LAERQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDS 315
|
330 340
....*....|....*....|..
gi 256017143 319 PCLPEAEAMFAINADGVGDAKD 340
Cdd:PTZ00035 316 PNLPESEAVFAISEGGIIDAKD 337
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
1-340 |
0e+00 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 541.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 1 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILTESRS 80
Cdd:PLN03186 4 AVAAAAAQAMQEEEEEEAAHGPFPIEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 81 VARLECNSVILVYCTlRLSGSSDSPASASRVVGTTGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMY 160
Cdd:PLN03186 84 LVPLGFTTASQLHAQ-RQEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 161 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS 240
Cdd:PLN03186 163 IDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 241 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPC 320
Cdd:PLN03186 243 ARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGRGENRICKVISSPC 322
|
330 340
....*....|....*....|
gi 256017143 321 LPEAEAMFAINADGVGDAKD 340
Cdd:PLN03186 323 LPEAEARFSISSEGVTDVKD 342
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
116-337 |
0e+00 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 528.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 195
Cdd:cd19513 14 GGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNGEDVLDNVAYARA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 196 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 275
Cdd:cd19513 94 YNTDHQMQLLIQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLAKFLRMLQRLADEFGVAVVITNQVVAQVD 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 256017143 276 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 337
Cdd:cd19513 174 GAAMFAGDPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITEDGIGD 235
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
116-338 |
2.82e-168 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 468.32 E-value: 2.82e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 195
Cdd:pfam08423 32 GGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERLVAIAERYGLDPEDVLDNVAYARA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 196 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 275
Cdd:pfam08423 112 YNSEHQMQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELAERQQHLAKFLRTLQRLADEFGVAVVITNQVVAQVD 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 256017143 276 GAA-MFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 338
Cdd:pfam08423 192 GAAgMFSGDPKKPIGGHIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAVFAIGSGGIIDP 255
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
116-336 |
8.44e-158 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 441.20 E-value: 8.44e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 195
Cdd:cd01123 14 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIAQRFGLDPDDVLDNVAYARA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 196 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 275
Cdd:cd01123 94 FNSDHQTQLLDQAAAMMVESRFKLLIVDSATALYRTDYSGRGELSARQMHLAKFLRMLQRLADEFGVAVVVTNQVVAQVD 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 256017143 276 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVG 336
Cdd:cd01123 174 GAMMFAADPKKPIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITADGVG 234
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
4-340 |
1.35e-133 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 384.13 E-value: 1.35e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 4 QMQLEANADTSVEEESFgpQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILTESRSV-- 81
Cdd:PLN03187 12 QLQLVEAEEVDEEEDLF--ESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLln 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 82 --------ARLECNSVILVyctlrLSGSsdspASASRVVGttGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGG 153
Cdd:PLN03187 90 qgfitgsdALLKRKSVVRI-----TTGS----QALDELLG--GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 154 GEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 233
Cdd:PLN03187 159 GNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDF 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 234 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQvDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRIC 313
Cdd:PLN03187 239 TGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIAD-PGGGMFISDPKKPAGGHVLAHAATIRLMLRKGKGEQRVC 317
|
330 340
....*....|....*....|....*..
gi 256017143 314 KIYDSPCLPEAEAMFAINADGVGDAKD 340
Cdd:PLN03187 318 KVFDAPNLPEAEAEFQITSGGIMDAKD 344
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
25-338 |
1.62e-131 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 377.58 E-value: 1.62e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 25 ISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILtesRSVARLECNSVILVYCTLRLSGSSDS 104
Cdd:TIGR02238 1 IDKLQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIK---EAASKIINPGFITAFEISQKRKKVLK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 105 PASASRVVGTT--GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLS 182
Cdd:TIGR02238 78 ITTGSQALDGIlgGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 183 GSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGV 262
Cdd:TIGR02238 158 PDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNV 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 256017143 263 AVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 338
Cdd:TIGR02238 238 AVFVTNQVQADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMPEAEASFQITEGGIADA 313
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
116-337 |
1.20e-130 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 372.46 E-value: 1.20e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 195
Cdd:cd19514 14 GGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRPIAERFGVDHDAVLDNILYARA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 196 FNTDHQTQLLYQASAMMVES-RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 274
Cdd:cd19514 94 YTSEHQMELLDYVAAKFHEEaVFRLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFITNQVTADP 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 256017143 275 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 337
Cdd:cd19514 174 GAAMTFQADPKKPIGGHILAHASTTRISLRKGRGEERIAKIYDSPDLPENEATFAITAGGIAD 236
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
32-338 |
4.88e-118 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 343.40 E-value: 4.88e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 32 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILTESRSVARL-ECNSVILVY----CTLRLSGSSDSpa 106
Cdd:PRK04301 13 GVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIgGFETALEVLerrkNVGKITTGSKE-- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 107 sASRVVGttGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV 186
Cdd:PRK04301 91 -LDELLG--GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEV 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 187 LDNVAYARAFNTDHQTQLLYQASAMMVESR-YALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVV 265
Cdd:PRK04301 168 LDNIHVARAYNSDHQMLLAEKAEELIKEGEnIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVV 247
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 256017143 266 ITNQVVAQVDgaaMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 338
Cdd:PRK04301 248 VTNQVMARPD---AFFGDPTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPHLPEGEAVFRITEEGIRDA 317
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
116-337 |
2.54e-108 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 315.46 E-value: 2.54e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 195
Cdd:cd19515 14 GGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMAKALGLDPDEVLDNIYVARA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 196 FNTDHQTQLLYQASAMMVESR-YALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 274
Cdd:cd19515 94 YNSNHQMLLVEKAEDLIKEGNnIKLLIVDSLTSHFRAEYVGRGTLAERQQKLNKHLHDLHRLADLYNIAVLVTNQVMAKP 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 256017143 275 DgaaMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 337
Cdd:cd19515 174 D---AFFGDPTQAIGGHILGHAATFRVYLRKGKGGKRIARLVDSPHLPEGEAVFRITEKGIED 233
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
32-337 |
3.90e-107 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 315.53 E-value: 3.90e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 32 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILTESRSVARLEC-NSVILVYCTLRLSGS-SDSPASAS 109
Cdd:TIGR02236 6 GVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGfETADDVLERRKTIGKiTTGSKELD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 110 RVVGttGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDN 189
Cdd:TIGR02236 86 ELLG--GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 190 VAYARAFNTDHQTQLLYQASAMMVE--SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVIT 267
Cdd:TIGR02236 164 IYVARAYNSNHQMLLVEKAEDLIKElnNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVT 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 268 NQVVAQVDgaaMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 337
Cdd:TIGR02236 244 NQVMARPD---AFFGDPTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHLPEGEAVFRITEKGIED 310
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
121-305 |
1.81e-49 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 163.68 E-value: 1.81e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 121 GSITEMFGEFRTGKTQICHTLAVTCQLpidrggGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD---VLDNVAYARAFN 197
Cdd:cd01393 1 GKITEIYGPPGSGKTQLALQLAANALL------LGGGVVWIDTEGAFPPSRLVQILEASPSSELElaeALSRLLYFRPPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 198 TDHQTQLL-YQASAMMVESRYALLIVDSATALYRTDY----SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 272
Cdd:cd01393 75 TLAHLLALdSLPESLFPPPNTSLVVVDSVSALFRKAFprggDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTT 154
|
170 180 190
....*....|....*....|....*....|...
gi 256017143 273 QVDGaaMFAADPKKPIGGNIIAHASTTRLYLRK 305
Cdd:cd01393 155 KIRG--GSGASLVPPALGNTWEHSVSTRLLLYR 185
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
116-322 |
1.02e-41 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 145.51 E-value: 1.02e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV-----LDNV 190
Cdd:cd19491 7 GGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQLASSLPKRYHLEkaknfLDNI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 191 AYARAFNTDHQTQLL-YQASAMMVESRYALLIVDSATALYRTDY-SGRGELSARQMHLARFLRMLLRLADEFGVAVVITN 268
Cdd:cd19491 87 FVEHVADLETLEHCLnYQLPALLERGPIRLVVIDSIAALFRSEFdTSRSDLVERAKYLRRLADHLKRLADKYNLAVVVVN 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 269 QVVAQVD------------GAAMFAADPKKPIGGNII-------AHASTTRLYLRKGRGET----------RICKIYDSP 319
Cdd:cd19491 167 QVTDRFDsssdasglgvldYLSQFSSFSGGVSGNRKVpalgltwANLVNTRLMLSRTPKRItdssaasisvRRLEVVFSP 246
|
...
gi 256017143 320 CLP 322
Cdd:cd19491 247 HLP 249
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
116-335 |
1.12e-38 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 136.92 E-value: 1.12e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCqlpIDRGGgegKAMYIDTEGtFRPERLLAVAeryglsGSD---VLDNVAY 192
Cdd:PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEA---AKNGK---KVIYIDTEG-LSPERFKQIA------GEDfeeLLSNIII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 193 ARAFNTDHQTQLLyQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 272
Cdd:PRK09361 85 FEPSSFEEQSEAI-RKAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYS 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 256017143 273 QVDGAAMfaadpkKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAE-AMFAINADGV 335
Cdd:PRK09361 164 DIDSDGL------RPLGGHTLEHWSKTILRLEKFRNGKRRATLEKHRSRPEGEsAEFRITDRGI 221
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
116-335 |
1.61e-37 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 133.59 E-value: 1.61e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQlpidRGGgeGKAMYIDTEGtFRPERLLAVAeryGLSGSDVLDNVAYARA 195
Cdd:cd01394 14 GGVERGTITQIYGPPGSGKTNICLQLAVEAA----KQG--KKVVYIDTEG-LSPERFQQIA---GERFESIASNIIVFEP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 196 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARqmhLARFLRMLLRLADEFGVAVVITNQVVAQVD 275
Cdd:cd01394 84 YSFDEQGVAIQEAEKLLKSDKVDLVVVDSATALYRLELGDDSEANRE---LSRQMSKLLSIARKYDIPVVITNQVYSDID 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 256017143 276 gaamfaADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAE-AMFAINADGV 335
Cdd:cd01394 161 ------DDRLKPVGGTLLEHWSKAIIRLEKSPPGLRRATLEKHRSRPEGQsAGFRITDRGI 215
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
116-319 |
8.47e-36 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 129.36 E-value: 8.47e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER-----------YGLSGS 184
Cdd:cd19493 6 GGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERLAEIAEArfpeafsgfmeENERAE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 185 DVLDNVAYARafnTDHQTQLLYQASAM---MVESRYALLIVDSATALYRTDYSG-RGELSARQMHLARFLRMLLRLADEF 260
Cdd:cd19493 86 EMLKRVAVVR---VTTLAQLLERLPNLeehILSSGVRLVVIDSIAALVRREFGGsDGEVTERHNALAREASSLKRLAEEF 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 261 GVAVVITNQVVAQVDGAAMFAADPKKPIgGNIIAHASTTRLYLRKGRG-ETRICKIYDSP 319
Cdd:cd19493 163 RIAVLVTNQATTHFGDAGDGSSGVTAAL-GDAWAHAVNTRLRLERCLLqLRRVLEIVKSP 221
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
116-335 |
7.74e-35 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 126.38 E-value: 7.74e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQlpidrgGGEGKAMYIDTEGtFRPERLLAVAERyglSGSDVLDNVAYARA 195
Cdd:TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAA------RQGKKVVYIDTEG-LSPERFKQIAED---RPERALSNFIVFEV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 196 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSgrGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 275
Cdd:TIGR02237 77 FDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLELS--DDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVN 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 276 GaamfaaDPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGV 335
Cdd:TIGR02237 155 N------GTLRPLGGHLLEHWSKVILRLEKFRGRRLATLEKHRSRPEGESVYFRITDDGI 208
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
121-319 |
4.34e-32 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 118.10 E-value: 4.34e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 121 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFrperllavaeryglsgsdvldNVAYARAFNTDH 200
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF---------------------NIHYFRVHDYVE 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 201 QTQLLYQASAMMVE-SRYALLIVDSATALYRTDYSGrgeLSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV--DGA 277
Cdd:cd19492 60 LLALINSLPKFLEDhPKVKLIVVDSIAFPFRHDFDD---LAQRTRLLNGLAQLLHSLARQHNLAVVLTNQVTTKIseDGQ 136
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 256017143 278 AMFAadpkkPIGGNIIAHASTTRLYLRKGRGEtRICKIYDSP 319
Cdd:cd19492 137 SQLV-----PALGESWSHACTTRLFLTWDEKQ-RFAHLYKSP 172
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
116-305 |
2.00e-23 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 96.17 E-value: 2.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLA--VTCQLPIdrgggegKAMYIDTEGTFRPERLLAVAE-RYGLSGS--DVLDNV 190
Cdd:cd19489 2 GGLRTGEITELVGESSSGKTQLCLTAAanVASRSGQ-------NVLYIDTKSSFSARRLAQILKsRAQDAEEidKALQRI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 191 AYARAFNTDHQTQLLYQASAMM------VESRYALLIVDSATAL---YRTDYS---GRGELsarqMHLARFLRmllRLAD 258
Cdd:cd19489 75 RVVRVFDPYELLDLLEELRNTLsqqqenLYSRLKLVIIDSLSALispLLGGSKhseGHALL----ASLARLLK---KLAA 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 256017143 259 EFGVAVVITNQVVaqVDGAAMFAADPkKPIGGNIIAHASTTRLYLRK 305
Cdd:cd19489 148 EYQIAVLVTNLTV--RGGDGGQQGST-KPALGEYWESVPSTRLLLSR 191
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
116-306 |
6.22e-20 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 89.07 E-value: 6.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLpidRGGGegkAMYIDTEGTFRPERllavAERYGLSgsdvLDNVAYARA 195
Cdd:COG0468 58 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQK---AGGI---AAFIDAEHALDPEY----AKKLGVD----IDNLLVSQP 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 196 FNTDHQTQLLyqasAMMVESRYALLIV-DSATALY-RTDYSGR-GE----LSARQMHLArfLRMLLRLADEFGVAVVITN 268
Cdd:COG0468 124 DTGEQALEIA----ETLVRSGAVDLIVvDSVAALVpKAEIEGEmGDshvgLQARLMSQA--LRKLTGAISKSNTTVIFIN 197
|
170 180 190
....*....|....*....|....*....|....*...
gi 256017143 269 QVVAQVDgaAMFaADPKKPIGGNIIAHASTTRLYLRKG 306
Cdd:COG0468 198 QLREKIG--VMF-GNPETTTGGNALKFYASVRLDIRRI 232
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
121-269 |
2.01e-14 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 71.61 E-value: 2.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 121 GSITEMFGEFRTGKTQICHTLAVTCQLP-----IDRGGGEGKAMYIDTEGTFRPERLLAVAERY-------GLSGSDV-- 186
Cdd:cd19490 1 GDVIEITGPSGSGKTELLYHLAARCILPsswggVPLGGLEAAVVFIDTDGRFDILRLRSILEARiraaiqaANSSDDEed 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 187 --------LDNVAYARAFNTDHQTQLLYQASAMMVESRY----ALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLL 254
Cdd:cd19490 81 veeiarecLQRLHIFRCHSSLQLLATLLSLENYLLSLSAnpelGLLLIDSISAFYWQDRFSAELARAAPLLQEAALRAIL 160
|
170
....*....|....*....
gi 256017143 255 ----RLADEFGVAVVITNQ 269
Cdd:cd19490 161 relrRLRRRFQLVVIATKQ 179
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
118-311 |
6.36e-11 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 62.61 E-value: 6.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 118 IETGSITEMFGEFRTGKT----QIChtLAVTCQLP-IDRGGGEGKAMYIDTEGTFRP--ERLLAVAERYGLSGSDVLDNV 190
Cdd:COG3598 10 LPEGGVTLLAGPPGTGKSflalQLA--AAVAAGGPwLGRRVPPGKVLYLAAEDDRGElrRRLKALGADLGLPFADLDGRL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 191 AYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDysgrgELSARQMhlARFLRMLLRLADEFGVAVVItnqv 270
Cdd:COG3598 88 RLLSLAGDLDDTDDLEALERAIEEEGPDLVVIDPLARVFGGD-----ENDAEEM--RAFLNPLDRLAERTGAAVLL---- 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 256017143 271 VAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETR 311
Cdd:COG3598 157 VHHTGKGGAGKDSGDRARGSSALRGAARSVLVLSREKGEDL 197
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
116-306 |
2.73e-08 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 53.71 E-value: 2.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTqichTLAVTCQLPIDRGGgeGKAMYIDTEGTFRPErllaVAERYGLSgsdvLDNVAYARA 195
Cdd:cd00983 19 GGLPRGRIIEIYGPESSGKT----TLALHAIAEAQKLG--GTAAFIDAEHALDPE----YAKKLGVD----IDNLLVSQP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 196 fntDHQTQLLYQASAMMVESRYALLIVDSATALY-RTDYSgrGELSARQMHL-AR----FLRMLLRLADEFGVAVVITNQ 269
Cdd:cd00983 85 ---DTGEQALEIADTLIRSGAVDLIVVDSVAALVpKAEIE--GEMGDSHVGLqARlmsqALRKLTGSLSKSKTTVIFINQ 159
|
170 180 190
....*....|....*....|....*....|....*..
gi 256017143 270 VVAQVdgAAMFAAdPKKPIGGNIIAHASTTRLYLRKG 306
Cdd:cd00983 160 LREKI--GVMFGN-PETTTGGNALKFYASVRLDIRRI 193
|
|
| HHH_5 |
pfam14520 |
Helix-hairpin-helix domain; |
32-79 |
1.56e-07 |
|
Helix-hairpin-helix domain;
Pssm-ID: 434010 [Multi-domain] Cd Length: 57 Bit Score: 47.48 E-value: 1.56e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 256017143 32 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILTESR 79
Cdd:pfam14520 9 GIGPKTALALLSAGIGTVEDLAEADVDELAEIPGIGEKTAQRIILELR 56
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
118-267 |
2.40e-06 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 47.38 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 118 IETGSITEMFGEFRTGKTQICHTLAVTC-----QLPIDRGGGEGKAMYIDTEGTFR--PERLLAVAERYGLSGS-DVLDN 189
Cdd:pfam13481 30 LPAGGLGLLAGAPGTGKTTLALDLAAAVatgkpWLGGPRVPEQGKVLYVSAEGPADelRRRLRAAGADLDLPARlLFLSL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 190 VAYARAFNTDHQTQLLYQASAMMVES-----RYALLIVDSATALYrtdysGRGELSARQMhlARFLRMLLRLADEFGVAV 264
Cdd:pfam13481 110 VESLPLFFLDRGGPLLDADVDALEAAleeveDPDLVVIDPLARAL-----GGDENSNSDV--GRLVKALDRLARRTGATV 182
|
...
gi 256017143 265 VIT 267
Cdd:pfam13481 183 LLV 185
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
116-283 |
3.47e-06 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 47.22 E-value: 3.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQICHTLAVtcqlpidRGGGEG-KAMYIDTEgtFRPERLLAVAERYGLSGSDVLDN--VAY 192
Cdd:COG0467 15 GGLPRGSSTLLSGPPGTGKTTLALQFLA-------EGLRRGeKGLYVSFE--ESPEQLLRRAESLGLDLEEYIESglLRI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 193 ARAFNTDHQT---QLLYQASAMMVESRYALLIVDSATALYRtdysgrgeLSARQMHLARFLRMLLRLADEFGVAVVITNQ 269
Cdd:COG0467 86 IDLSPEELGLdleELLARLREAVEEFGAKRVVIDSLSGLLL--------ALPDPERLREFLHRLLRYLKKRGVTTLLTSE 157
|
170
....*....|....*...
gi 256017143 270 V----VAQVDGAAMFAAD 283
Cdd:COG0467 158 TggleDEATEGGLSYLAD 175
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
116-305 |
1.73e-05 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 45.47 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 116 GGIETGSITEMFGEFRTGKTQIchTLAVTCQlpIDRGGgeGKAMYIDTEGTFRPerllAVAERYGLSgsdvLDNVAYARA 195
Cdd:pfam00154 47 GGYPKGRIIEIYGPESSGKTTL--ALHAIAE--AQKAG--GTAAFIDAEHALDP----VYAKKLGVD----IDNLLVSQP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 196 fntDHQTQLLYQASAMMVESRYALLIVDSATALY-RTDYSGR-GE----LSARQMHLArfLRMLLRLADEFGVAVVITNQ 269
Cdd:pfam00154 113 ---DTGEQALEIADMLVRSGAIDLIVVDSVAALVpKAEIEGEmGDshvgLQARLMSQA--LRKLTGSISKSNTTVIFINQ 187
|
170 180 190
....*....|....*....|....*....|....*.
gi 256017143 270 VVAQVdgAAMFaADPKKPIGGNIIAHASTTRLYLRK 305
Cdd:pfam00154 188 IREKI--GVMF-GNPETTTGGRALKFYASVRLDIRR 220
|
|
| RepA_RSF1010_like |
cd01125 |
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family ... |
156-266 |
4.68e-04 |
|
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family includes the homo-hexameric replicative helicase RepA encoded by plasmid RSF1010. RSF1010 is found in most Gram-negative bacteria and some Gram-positive bacteria . The RepA protein of Plasmid RSF1010 is a 5'-3' DNA helicase which can utilize ATP, dATP, GTP and dGTP (and CTP and dCTP to a lesser extent).
Pssm-ID: 410870 Cd Length: 238 Bit Score: 41.21 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256017143 156 GKAMYIDTEGTFR--PERLLAVAERYGLSGSDVLDN--VAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSataLYRT 231
Cdd:cd01125 40 GRVVYLAAEDPRDglRRRLKAIGAHLGDEDAALAENlvIENLRGKPVSIDAEAPELERIIEELEGVRLIIIDT---LARV 116
|
90 100 110
....*....|....*....|....*....|....*
gi 256017143 232 DYSGRgELSARQMhlARFLRMLLRLADEFGVAVVI 266
Cdd:cd01125 117 LHGGD-ENDAADM--GAFVAGLDRIARETGAAVLL 148
|
|
| nusA_Cterm_rpt |
TIGR01954 |
transcription termination factor NusA, C-terminal duplication; NusA is a bacterial ... |
33-80 |
4.83e-04 |
|
transcription termination factor NusA, C-terminal duplication; NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic. [Transcription, Transcription factors]
Pssm-ID: 273894 [Multi-domain] Cd Length: 50 Bit Score: 37.67 E-value: 4.83e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 256017143 33 INANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILTESRS 80
Cdd:TIGR01954 1 INEEIAQLLVEEGFTTVEDLAYVPIDELLSIEGFDEETAKELINRARN 48
|
|
| MUS81 |
COG1948 |
ERCC4-type crossover junction endonuclease [Replication, recombination and repair]; |
41-74 |
6.21e-04 |
|
ERCC4-type crossover junction endonuclease [Replication, recombination and repair];
Pssm-ID: 441551 [Multi-domain] Cd Length: 214 Bit Score: 40.54 E-value: 6.21e-04
10 20 30
....*....|....*....|....*....|....
gi 256017143 41 LEEagFHTVEAVAYAPKKELINIKGISEAKADKI 74
Cdd:COG1948 172 LEH--FGSVEAVFNASEEELMKVEGIGEKTAERI 203
|
|
| |
