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protein SSXT isoform 4 [Mus musculus]
SS18 family protein( domain architecture ID 10523487)
SS18 family protein similar to human calcium-responsive transactivator (also called SS18-like protein 1) that is required for calcium-dependent dendritic growth and branching in cortical neurons
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
SSXT | pfam05030 | SSXT protein (N-terminal region); The SSXT or SS18 protein is involved in synovial sarcoma in ... |
14-73 | 1.44e-29 | |||
SSXT protein (N-terminal region); The SSXT or SS18 protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteriztic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2. : Pssm-ID: 428268 Cd Length: 60 Bit Score: 106.97 E-value: 1.44e-29
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PABP-1234 super family | cl31127 | polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
71-160 | 6.67e-04 | |||
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range. The actual alignment was detected with superfamily member TIGR01628: Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 41.33 E-value: 6.67e-04
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Name | Accession | Description | Interval | E-value | |||
SSXT | pfam05030 | SSXT protein (N-terminal region); The SSXT or SS18 protein is involved in synovial sarcoma in ... |
14-73 | 1.44e-29 | |||
SSXT protein (N-terminal region); The SSXT or SS18 protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteriztic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2. Pssm-ID: 428268 Cd Length: 60 Bit Score: 106.97 E-value: 1.44e-29
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PABP-1234 | TIGR01628 | polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
71-160 | 6.67e-04 | |||
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range. Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 41.33 E-value: 6.67e-04
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Name | Accession | Description | Interval | E-value | |||
SSXT | pfam05030 | SSXT protein (N-terminal region); The SSXT or SS18 protein is involved in synovial sarcoma in ... |
14-73 | 1.44e-29 | |||
SSXT protein (N-terminal region); The SSXT or SS18 protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteriztic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2. Pssm-ID: 428268 Cd Length: 60 Bit Score: 106.97 E-value: 1.44e-29
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PABP-1234 | TIGR01628 | polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
71-160 | 6.67e-04 | |||
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range. Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 41.33 E-value: 6.67e-04
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PABP-1234 | TIGR01628 | polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
115-209 | 9.32e-04 | |||
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range. Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 40.56 E-value: 9.32e-04
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Blast search parameters | ||||
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