|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
8-381 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 688.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 8 RSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 87
Cdd:TIGR01425 56 KKKINLEDIASGINKRKLIQDAVFEELCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVC 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 88 ADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDN 167
Cdd:TIGR01425 136 ADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDS 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 168 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 247
Cdd:TIGR01425 216 IIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLG 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 248 MGDIEGLIDKVNELKLDDNE-ALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKL 326
Cdd:TIGR01425 296 MGDLKGLIDKVQDLALNDEEkTLIEHLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVF 375
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 226371618 327 MTIMDSMNDQELDSTDgaKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQM 381
Cdd:TIGR01425 376 MTIMDSMTDRELDSTA--KTMLKDPSRIRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-393 |
5.32e-153 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 441.57 E-value: 5.32e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 5 SMKRSAIDlEEMASGLNKRKMIQHAVFKELVKLVDPGVKAwTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTC 84
Cdd:PRK00771 50 SIKERALE-EEPPKGLTPREHVIKIVYEELVKLLGEETEP-LVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVG 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 85 LICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNEnfEIIIVDTSGRHKQEDSLFEEMLQVANAIQ 164
Cdd:PRK00771 128 LVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVK 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 165 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISK 244
Cdd:PRK00771 206 PDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISR 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 245 LLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDfMSKGNEQESMARL 323
Cdd:PRK00771 286 LLGMGDLESLLEKVEEaLDEEEEEKDVEKMMKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKL 364
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226371618 324 KKLMTIMDSMNDQELDSTD--GAKvfskqpgRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFK 393
Cdd:PRK00771 365 KKYKAIMDSMTEEELENPEiiNAS-------RIRRIARGSGTTVEDVRELLKYYKMMKKAMKQLKKGKGKMG 429
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
53-245 |
4.74e-144 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 409.27 E-value: 4.74e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 53 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 212
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 226371618 213 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 245
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
14-381 |
2.87e-127 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 375.13 E-value: 2.87e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 14 EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 93
Cdd:COG0541 62 EEVLKSLTPGQQVIKIVHDELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRP 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 94 GAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMD 173
Cdd:COG0541 142 AAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVD 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 174 ASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEG 253
Cdd:COG0541 222 AMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLS 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 254 LIDKVNElKLDDNEA--LIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGtDFMSKGNEQESMARLKKLMTIMD 331
Cdd:COG0541 302 LIEKAQE-AIDEEEAekLAKKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMG-KLKQLKDLDIDEKELKRIEAIIN 379
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 226371618 332 SMNDQELDSTDGAKvfskqPGRIQRVARGSGVSTRDVQELLTQytkFAQM 381
Cdd:COG0541 380 SMTPEERRNPDIIN-----GSRKRRIAKGSGTTVQDVNRLLKQ---FEQM 421
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
53-245 |
2.49e-106 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 313.32 E-value: 2.49e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 53 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 212
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 226371618 213 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 245
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
52-247 |
3.92e-89 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 269.66 E-value: 3.92e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 52 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKT-CLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 130
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKvLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 131 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGA 210
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 226371618 211 LSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 247
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
8-381 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 688.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 8 RSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 87
Cdd:TIGR01425 56 KKKINLEDIASGINKRKLIQDAVFEELCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVC 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 88 ADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDN 167
Cdd:TIGR01425 136 ADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDS 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 168 IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 247
Cdd:TIGR01425 216 IIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLG 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 248 MGDIEGLIDKVNELKLDDNE-ALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKL 326
Cdd:TIGR01425 296 MGDLKGLIDKVQDLALNDEEkTLIEHLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVF 375
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 226371618 327 MTIMDSMNDQELDSTDgaKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQM 381
Cdd:TIGR01425 376 MTIMDSMTDRELDSTA--KTMLKDPSRIRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-393 |
5.32e-153 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 441.57 E-value: 5.32e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 5 SMKRSAIDlEEMASGLNKRKMIQHAVFKELVKLVDPGVKAwTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTC 84
Cdd:PRK00771 50 SIKERALE-EEPPKGLTPREHVIKIVYEELVKLLGEETEP-LVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVG 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 85 LICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNEnfEIIIVDTSGRHKQEDSLFEEMLQVANAIQ 164
Cdd:PRK00771 128 LVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVK 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 165 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISK 244
Cdd:PRK00771 206 PDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISR 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 245 LLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDfMSKGNEQESMARL 323
Cdd:PRK00771 286 LLGMGDLESLLEKVEEaLDEEEEEKDVEKMMKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKL 364
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226371618 324 KKLMTIMDSMNDQELDSTD--GAKvfskqpgRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFK 393
Cdd:PRK00771 365 KKYKAIMDSMTEEELENPEiiNAS-------RIRRIARGSGTTVEDVRELLKYYKMMKKAMKQLKKGKGKMG 429
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
53-245 |
4.74e-144 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 409.27 E-value: 4.74e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 53 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 212
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 226371618 213 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 245
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
14-381 |
2.87e-127 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 375.13 E-value: 2.87e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 14 EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 93
Cdd:COG0541 62 EEVLKSLTPGQQVIKIVHDELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRP 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 94 GAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMD 173
Cdd:COG0541 142 AAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVD 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 174 ASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEG 253
Cdd:COG0541 222 AMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLS 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 254 LIDKVNElKLDDNEA--LIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGtDFMSKGNEQESMARLKKLMTIMD 331
Cdd:COG0541 302 LIEKAQE-AIDEEEAekLAKKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMG-KLKQLKDLDIDEKELKRIEAIIN 379
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 226371618 332 SMNDQELDSTDGAKvfskqPGRIQRVARGSGVSTRDVQELLTQytkFAQM 381
Cdd:COG0541 380 SMTPEERRNPDIIN-----GSRKRRIAKGSGTTVQDVNRLLKQ---FEQM 421
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
53-245 |
2.65e-107 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 315.85 E-value: 2.65e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 53 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 212
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 226371618 213 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 245
Cdd:cd03115 161 IVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
53-245 |
2.49e-106 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 313.32 E-value: 2.49e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 53 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 212
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 226371618 213 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 245
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
14-384 |
3.81e-101 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 308.83 E-value: 3.81e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 14 EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY-YQRKGWKTCLICADTFR 92
Cdd:TIGR00959 61 QEVLKSLSPGQQFIKIVHEELVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYlKKKQGKKVLLVACDLYR 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 93 AGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 172
Cdd:TIGR00959 141 PAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVV 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 173 DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIE 252
Cdd:TIGR00959 221 DAMTGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDIL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 253 GLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMD 331
Cdd:TIGR00959 301 SLVEKAQEvVDEEEAKKLAEKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIIS 380
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 226371618 332 SMNDQELDSTDGAKvfskqPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKK 384
Cdd:TIGR00959 381 SMTPEERRNPKILN-----PSRRKRIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
52-247 |
3.92e-89 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 269.66 E-value: 3.92e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 52 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKT-CLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 130
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKvLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 131 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGA 210
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 226371618 211 LSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 247
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
53-236 |
6.72e-62 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 199.36 E-value: 6.72e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 53 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 212
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180
....*....|....*....|....
gi 226371618 213 AVAATKSPIIFIGTGEHIDDFEPF 236
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
26-247 |
2.29e-58 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 194.55 E-value: 2.29e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 26 IQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGwKTCLICA-DTFRAGAFDQLKQNAT 104
Cdd:PRK10416 88 LKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAAgDTFRAAAIEQLQVWGE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 105 KARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR-HKQEDsLFEEMLQVANAIQ------PDNIVYVMDASIG 177
Cdd:PRK10416 167 RVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRlHNKTN-LMEELKKIKRVIKkadpdaPHEVLLVLDATTG 245
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 178 QACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 247
Cdd:PRK10416 246 QNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
26-247 |
8.54e-58 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 192.55 E-value: 8.54e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 26 IQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATK 105
Cdd:COG0552 74 LKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGER 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 106 ARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR-HKQEDsLFEEMLQVANAIQ------PDNIVYVMDASIGQ 178
Cdd:COG0552 154 VGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRlHNKKN-LMEELKKIKRVIKkldpdaPHEVLLVLDATTGQ 232
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 226371618 179 ACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 247
Cdd:COG0552 233 NALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
53-245 |
7.39e-56 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 183.93 E-value: 7.39e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 53 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 206
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 226371618 207 GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 245
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
7-246 |
2.16e-53 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 180.15 E-value: 2.16e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 7 KRSAIDLEEMASGLNKRKMIQhAVFKELVKLVDPGVkawTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 86
Cdd:TIGR00064 36 KGKKVKDAEKLKEILKEYLKE-ILKEDLLKNTDLEL---IVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 87 CADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ-- 164
Cdd:TIGR00064 112 AGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKkv 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 165 ----PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQP 240
Cdd:TIGR00064 192 dkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADW 271
|
....*.
gi 226371618 241 FISKLL 246
Cdd:TIGR00064 272 FVEALF 277
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
49-247 |
3.00e-51 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 176.32 E-value: 3.00e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 49 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF----YGSytemDPVIIAS 124
Cdd:PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVikhkYGA----DPAAVAY 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 125 EGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGH 204
Cdd:PRK14974 213 DAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDAD 292
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 226371618 205 AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 247
Cdd:PRK14974 293 AKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
13-247 |
7.43e-33 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 127.67 E-value: 7.43e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 13 LEEMASGLNKRKMIQhAVFKELVKLVDPGVKAWTPTKGkqnVIMFVGLQGSGKTTTCSKLAYYY-QRKGWKTCLICADTF 91
Cdd:COG1419 129 LEKLPEDLSAEEAWR-ALLEALARRLPVAEDPLLDEGG---VIALVGPTGVGKTTTIAKLAARFvLRGKKKVALITTDTY 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 92 RAGAFDQLKQNATKARIPFYGSYTEMDpviiASEGVEKFKneNFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYV 171
Cdd:COG1419 205 RIGAVEQLKTYARILGVPVEVAYDPEE----LKEALERLR--DKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLV 278
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 226371618 172 MDASI-GQACEAQAKAFKDkVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHI-DDFEPFKTQPFISKLLG 247
Cdd:COG1419 279 LSATTkYEDLKEIVEAFSS-LGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
277-380 |
1.32e-32 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 119.04 E-value: 1.32e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 277 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGtdfmSKGNEQESMARLKKLMTIMDSMNDQELDSTDgakvfSKQPGRIQR 356
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPGMG----KKDDDIDSEKKLKRIEAIIDSMTPKERDNPD-----IINASRKRR 71
|
90 100
....*....|....*....|....
gi 226371618 357 VARGSGVSTRDVQELLTQYTKFAQ 380
Cdd:pfam02978 72 IARGSGTSVQEVNRLLKQFKQMKK 95
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
54-233 |
2.40e-31 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 119.26 E-value: 2.40e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 54 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKtCLICA-DTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFR-VLIAAcDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVAS----------VIVTKLD 202
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALADYSpsdnprlidgIVLTKFD 160
|
170 180 190
....*....|....*....|....*....|..
gi 226371618 203 G-HAKGGGALSAVAATKSPIIFIGTGEHIDDF 233
Cdd:cd17876 161 TiDDKVGAALSMVYATGQPIVFVGTGQTYTDL 192
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
54-245 |
1.14e-26 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 106.09 E-value: 1.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 54 VIMFVGLQGSGKTTTCSKLAYYYQ-RKGWKTCLICADTFRAGAFDQLKqnaTKARIpfygsyteMD-PVIIAsEGVEKFK 131
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLK---TYAEI--------MGiPVEVA-EDPEDLA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 132 NE-----NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASiGQACEAQ--AKAFKDkVDVASVIVTKLDGH 204
Cdd:cd17873 70 DAlerlsDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSAT-TKAKDLKeiIERFSP-LGYRGLILTKLDET 147
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 226371618 205 AKGGGALSAVAATKSPIIFIGTGEHI-DDFEPFKTQPFISKL 245
Cdd:cd17873 148 TSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
13-247 |
9.89e-22 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 96.89 E-value: 9.89e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 13 LEEMASGLN-----KRKMIQHAVFKELVKLVDPGVKAwtpTKGKQNVIMFVGLQGSGKTTTCSKLA----YYYQRKgwKT 83
Cdd:PRK05703 180 AEKLLKLLLehmppRERTAWRYLLELLANMIPVRVED---ILKQGGVVALVGPTGVGKTTTLAKLAaryaLLYGKK--KV 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 84 CLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDpviiASEGVEKFKneNFEIIIVDTSGRHKQEDSLFEEmLQ--VAN 161
Cdd:PRK05703 255 ALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKE----LAKALEQLR--DCDVILIDTAGRSQRDKRLIEE-LKalIEF 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 162 AIQPDNIVYVMDASIG-QACEAQAKAFKdKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHI-DDFEPFKTQ 239
Cdd:PRK05703 328 SGEPIDVYLVLSATTKyEDLKDIYKHFS-RLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPE 406
|
....*...
gi 226371618 240 PFISKLLG 247
Cdd:PRK05703 407 ELVRLLLG 414
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
13-246 |
6.86e-15 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 76.16 E-value: 6.86e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 13 LEEMASGLNKR-----KMIQHAVFKELVKL------VDPGVKAWTPtKGKQNVIMFVGLQGSGKTTTCSKLAY-YYQRKG 80
Cdd:PRK12724 174 VEEMASKLEERlspvdQGRNHNVTERAVTYleervsVDSDLFSGTG-KNQRKVVFFVGPTGSGKTTSIAKLAAkYFLHMG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 81 WKTCLICADTFRAGAFDQLKQNATKARIPFYgsytemdpviiASEGVEKFKN----ENFEIIIVDTSG-RHKQEDSL--- 152
Cdd:PRK12724 253 KSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----------PVKDIKKFKEtlarDGSELILIDTAGySHRNLEQLerm 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 153 --FEEMLQVANAIQpdNIVYVMDASIGQACEAQAKAFkDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHI 230
Cdd:PRK12724 322 qsFYSCFGEKDSVE--NLLVLSSTSSYHHTLTVLKAY-ESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV 398
|
250
....*....|....*.
gi 226371618 231 ddfePFKTQPFISKLL 246
Cdd:PRK12724 399 ----PFDILNATKNLM 410
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
51-144 |
1.65e-13 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 70.83 E-value: 1.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 51 KQNVIMFVGLQGSGKTTTCSKLA--YYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDpviiASEGVE 128
Cdd:TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAarFALEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKE----LREALD 268
|
90
....*....|....*.
gi 226371618 129 KFKneNFEIIIVDTSG 144
Cdd:TIGR03499 269 RLR--DKDLILIDTAG 282
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
55-230 |
1.76e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 65.86 E-value: 1.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 55 IMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMdpviIASEGVEKFKNE- 133
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA----AMTRALTYFKEEa 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 134 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-AKAFKDkVDVASVIVTKLDGHAKGGGALS 212
Cdd:PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEiITNFKD-IHIDGIVFTKFDETASSGELLK 398
|
170
....*....|....*...
gi 226371618 213 AVAATKSPIIFIGTGEHI 230
Cdd:PRK11889 399 IPAVSSAPIVLMTDGQDV 416
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
55-230 |
5.85e-11 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 62.84 E-value: 5.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 55 IMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMdpviIASEGVEKFKNE- 133
Cdd:PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA----AMTRALTYFKEEa 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 134 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-AKAFKDkVDVASVIVTKLDGHAKGGGALS 212
Cdd:PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEiITNFKD-IHIDGIVFTKFDETASSGELLK 232
|
170
....*....|....*...
gi 226371618 213 AVAATKSPIIFIGTGEHI 230
Cdd:PRK06731 233 IPAVSSAPIVLMTDGQDV 250
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
51-159 |
3.50e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.15 E-value: 3.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 51 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIiasegvEKF 130
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLAL------ALA 74
|
90 100
....*....|....*....|....*....
gi 226371618 131 KNENFEIIIVDTSGRHKQEDSLFEEMLQV 159
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLE 103
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
54-246 |
4.50e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 61.74 E-value: 4.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 54 VIMFVGLQGSGKTTTCSKL-AYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKfk 131
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLaARCVAREGAdQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK-- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 132 nenfEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMD-ASIGQACEAQAKAFKDKV--DVASVIVTKLDGHAKGG 208
Cdd:PRK14723 265 ----HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNaASHGDTLNEVVHAYRHGAgeDVDGCIITKLDEATHLG 340
|
170 180 190
....*....|....*....|....*....|....*....
gi 226371618 209 GALSAVAATKSPIIFIGTGEHI-DDFEPFKTQPFISKLL 246
Cdd:PRK14723 341 PALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAF 379
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
54-235 |
2.71e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 58.98 E-value: 2.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 54 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDpviiASEGVEKFKNE 133
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAE----LEEAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 134 N-FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 212
Cdd:PRK12726 284 NcVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYT 363
|
170 180
....*....|....*....|....*
gi 226371618 213 AVAATKSPIIFIGTGEHIDD--FEP 235
Cdd:PRK12726 364 VMQETNLPVLYMTDGQNITEniFRP 388
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
54-244 |
5.44e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 57.81 E-value: 5.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 54 VIMFVGLQGSGKTTTCSKLAYY-YQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEgvekFK 131
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcVMRFGAsKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE----LR 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 132 NENfeIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDA-SIGQACEAQAKAFKDKV--------DVASVIVTKLD 202
Cdd:PRK14722 215 NKH--MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNAtSHGDTLNEVVQAYRSAAgqpkaalpDLAGCILTKLD 292
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 226371618 203 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISK 244
Cdd:PRK14722 293 EASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLK 334
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
54-232 |
9.57e-08 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 54.23 E-value: 9.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 54 VIMFVGLQGSGKTTTCSKLAYYY--QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYgsytEMDPVIIASEGVEKFK 131
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH----EADSAESLLDLLERLR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 132 neNFEIIIVDTSGRhKQEDSLFEEMLQVANAIQPDNIVYVM--DASIGQACEAqAKAFKdKVDVASVIVTKLDGHAKGGG 209
Cdd:PRK12727 428 --DYKLVLIDTAGM-GQRDRALAAQLNWLRAARQVTSLLVLpaNAHFSDLDEV-VRRFA-HAKPQGVVLTKLDETGRFGS 502
|
170 180
....*....|....*....|...
gi 226371618 210 ALSAVAATKSPIIFIGTGEHIDD 232
Cdd:PRK12727 503 ALSVVVDHQMPITWVTDGQRVPD 525
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
51-274 |
1.45e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 53.37 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 51 KQNVIMFVGLQGSGKTTTCSKLAYYY----QRKGWKTCLICADTFRAGAfdqlkqnatKARIPFYGsytemDPVIIASEG 126
Cdd:PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGA---------KKQIQTYG-----DIMGIPVKA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 127 VEKFKN--------ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE-----AQAKAFKDKvdv 193
Cdd:PRK12723 239 IESFKDlkeeitqsKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDvkeifHQFSPFSYK--- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 194 aSVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG----EHIDDFEPFKtqpfiskllgmgdiegLIDKVNELKLDDNEAL 269
Cdd:PRK12723 316 -TVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGqivpHNISIAEPLT----------------FIKKINGYRISDDAEF 378
|
....*
gi 226371618 270 IEKLK 274
Cdd:PRK12723 379 IRKLK 383
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
62-225 |
1.05e-05 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 46.57 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 62 GSGKTTTCSKLAYYYQRKGWKTCLICAD-----TFRAGA---FDQLKQNATKARIPfygsYTEMDPVIIASEG------- 126
Cdd:pfam01656 9 GVGKTTLAANLARALARRGLRVLLIDLDpqsnnSSVEGLegdIAPALQALAEGLKG----RVNLDPILLKEKSdeggldl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 127 ------VEKFKN-------------------ENFEIIIVDTSGrhkqedSLFEEML-------QVANAIQPDnIVYVMDA 174
Cdd:pfam01656 85 ipgnidLEKFEKellgprkeerlrealealkEDYDYVIIDGAP------GLGELLRnaliaadYVIIPLEPE-VILVEDA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 226371618 175 S-IGQACEAQAKAFKD-KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIG 225
Cdd:pfam01656 158 KrLGGVIAALVGGYALlGLKIIGVVLNKVDGDNHGKLLKEALEELLRGLPVLG 210
|
|
| ParAB_family |
cd02042 |
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ... |
62-206 |
8.96e-05 |
|
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.
Pssm-ID: 349760 [Multi-domain] Cd Length: 130 Bit Score: 42.14 E-value: 8.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 62 GSGKTTTCSKLAYYYQRKGWKTCLICADTfragafdQlkQNATKARipfygsytemdpviiasegvekfknenFEIIIVD 141
Cdd:cd02042 11 GVGKTTLAVNLAAALALRGKRVLLIDLDP-------Q--GSLTSWL---------------------------YDYILID 54
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 226371618 142 TSGRHkqeDSLFEEMLQVANAI----QPDniVYVMDASIG--QACEAQAKAFKDKVDVASVIVTKLDGHAK 206
Cdd:cd02042 55 TPPSL---GLLTRNALAAADLVlipvQPS--PFDLDGLAKllDTLEELKKQLNPPLLILGILLTRVDPRTK 120
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
51-230 |
1.06e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 44.56 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 51 KQNVIMFVGLQGSGKTTTCSKLAYY-YQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE 128
Cdd:PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARaVIRHGAdKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226371618 129 KfknenfEIIIVDTSGRHKQEDSLFEEMLQVANA-IQPDNIVYVMDASIGQACEAQAKAFKdKVDVASVIVTKLDGHAKG 207
Cdd:PRK14721 270 K------HMVLIDTVGMSQRDQMLAEQIAMLSQCgTQVKHLLLLNATSSGDTLDEVISAYQ-GHGIHGCIITKVDEAASL 342
|
170 180
....*....|....*....|...
gi 226371618 208 GGALSAVAATKSPIIFIGTGEHI 230
Cdd:PRK14721 343 GIALDAVIRRKLVLHYVTNGQKV 365
|
|
| MobB |
cd03116 |
molybdopterin-guanine dinucleotide biosynthesis protein B; Molybdenum is an essential trace ... |
54-82 |
6.81e-03 |
|
molybdopterin-guanine dinucleotide biosynthesis protein B; Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In Escherichia coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Pssm-ID: 349770 [Multi-domain] Cd Length: 157 Bit Score: 37.23 E-value: 6.81e-03
10 20
....*....|....*....|....*....
gi 226371618 54 VIMFVGLQGSGKTTTCSKLAYYYQRKGWK 82
Cdd:cd03116 2 IVGVVGKSGSGKTTLIEKLIPELKARGLR 30
|
|
| Tda10 |
COG4240 |
Pantothenate kinase-related protein Tda10 (topoisomerase I damage affected protein) [General ... |
59-84 |
7.57e-03 |
|
Pantothenate kinase-related protein Tda10 (topoisomerase I damage affected protein) [General function prediction only];
Pssm-ID: 443382 Cd Length: 298 Bit Score: 38.29 E-value: 7.57e-03
10 20
....*....|....*....|....*.
gi 226371618 59 GLQGSGKTTTCSKLAYYYQRKGWKTC 84
Cdd:COG4240 54 GGQGSGKSTLAAFLALILEQLGLRVA 79
|
|
| CysC |
COG0529 |
Adenylylsulfate kinase or related kinase [Inorganic ion transport and metabolism]; ... |
54-94 |
8.84e-03 |
|
Adenylylsulfate kinase or related kinase [Inorganic ion transport and metabolism]; Adenylylsulfate kinase or related kinase is part of the Pathway/BioSystem: Cysteine biosynthesis
Pssm-ID: 440295 [Multi-domain] Cd Length: 189 Bit Score: 37.38 E-value: 8.84e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 226371618 54 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAG 94
Cdd:COG0529 18 VVWFTGLSGSGKSTLANALERRLFERGRHVYLLDGDNVRHG 58
|
|
| |
