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upstream of N-ras, isoform B [Drosophila melanogaster]
CSP_CDS and CSP domain-containing protein( domain architecture ID 11266085)
CSP_CDS and CSP domain-containing protein
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
942-1006 | 1.02e-10 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. : Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 58.38 E-value: 1.02e-10
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S1_like super family | cl09927 | S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of ... |
347-395 | 2.93e-10 | ||
S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. The actual alignment was detected with superfamily member pfam00313: Pssm-ID: 471952 Cd Length: 66 Bit Score: 56.87 E-value: 2.93e-10
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
188-251 | 3.06e-10 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. : Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 56.84 E-value: 3.06e-10
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
537-604 | 3.02e-09 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. : Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 54.14 E-value: 3.02e-09
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S1_like super family | cl09927 | S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of ... |
790-834 | 2.61e-06 | ||
S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. The actual alignment was detected with superfamily member pfam00313: Pssm-ID: 471952 Cd Length: 66 Bit Score: 45.70 E-value: 2.61e-06
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Name | Accession | Description | Interval | E-value | ||
CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
942-1006 | 1.02e-10 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 58.38 E-value: 1.02e-10
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
347-395 | 2.93e-10 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 56.87 E-value: 2.93e-10
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
188-251 | 3.06e-10 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 56.84 E-value: 3.06e-10
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
187-251 | 5.02e-10 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 56.48 E-value: 5.02e-10
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
347-393 | 1.34e-09 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 54.91 E-value: 1.34e-09
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
537-604 | 3.02e-09 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 54.14 E-value: 3.02e-09
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
346-393 | 2.19e-08 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 51.81 E-value: 2.19e-08
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
944-1006 | 1.17e-07 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 49.55 E-value: 1.17e-07
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
537-602 | 5.99e-07 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 47.57 E-value: 5.99e-07
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
198-250 | 2.10e-06 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 46.03 E-value: 2.10e-06
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
790-834 | 2.61e-06 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 45.70 E-value: 2.61e-06
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
536-588 | 2.97e-06 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 45.70 E-value: 2.97e-06
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
790-831 | 3.23e-06 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 45.65 E-value: 3.23e-06
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
357-394 | 3.46e-06 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 45.57 E-value: 3.46e-06
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
783-829 | 3.60e-06 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 45.28 E-value: 3.60e-06
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
198-251 | 1.85e-05 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 43.26 E-value: 1.85e-05
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
535-602 | 2.98e-04 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 40.18 E-value: 2.98e-04
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
793-831 | 5.87e-04 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 39.02 E-value: 5.87e-04
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PRK10943 | PRK10943 | cold shock-like protein CspC; Provisional |
345-393 | 1.13e-03 | ||
cold shock-like protein CspC; Provisional Pssm-ID: 170841 Cd Length: 69 Bit Score: 38.51 E-value: 1.13e-03
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Name | Accession | Description | Interval | E-value | ||
CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
942-1006 | 1.02e-10 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 58.38 E-value: 1.02e-10
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
347-395 | 2.93e-10 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 56.87 E-value: 2.93e-10
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
188-251 | 3.06e-10 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 56.84 E-value: 3.06e-10
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
187-251 | 5.02e-10 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 56.48 E-value: 5.02e-10
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
347-393 | 1.34e-09 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 54.91 E-value: 1.34e-09
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
537-604 | 3.02e-09 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 54.14 E-value: 3.02e-09
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
346-393 | 2.19e-08 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 51.81 E-value: 2.19e-08
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
944-1006 | 1.17e-07 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 49.55 E-value: 1.17e-07
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
537-602 | 5.99e-07 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 47.57 E-value: 5.99e-07
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
198-250 | 2.10e-06 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 46.03 E-value: 2.10e-06
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
790-834 | 2.61e-06 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 45.70 E-value: 2.61e-06
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
536-588 | 2.97e-06 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 45.70 E-value: 2.97e-06
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
790-831 | 3.23e-06 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 45.65 E-value: 3.23e-06
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
357-394 | 3.46e-06 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 45.57 E-value: 3.46e-06
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
783-829 | 3.60e-06 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 45.28 E-value: 3.60e-06
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
198-251 | 1.85e-05 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 43.26 E-value: 1.85e-05
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
535-602 | 2.98e-04 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 40.18 E-value: 2.98e-04
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
793-831 | 5.87e-04 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 39.02 E-value: 5.87e-04
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PRK10943 | PRK10943 | cold shock-like protein CspC; Provisional |
345-393 | 1.13e-03 | ||
cold shock-like protein CspC; Provisional Pssm-ID: 170841 Cd Length: 69 Bit Score: 38.51 E-value: 1.13e-03
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Blast search parameters | ||||
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