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Conserved domains on  [gi|188528677|ref|NP_001120866|]
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tRNA-splicing endonuclease subunit Sen15 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sen15 super family cl20380
Sen15 protein; The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two ...
 65-119 2.68e-12

Sen15 protein; The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this hetero-tetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly.


The actual alignment was detected with superfamily member pfam09631:

Pssm-ID: 462844  Cd Length: 101  Bit Score: 58.40  E-value: 2.68e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 188528677   65 LVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQT---VVPTPITASLSHNRI 119
Cdd:pfam09631   1 LVYLNLVHAQLWTDVEILSEEELQLVLLRGRPPKKLSNDDtewVLPVPLTESLSLEQL 58
 
Name Accession Description Interval E-value
Sen15 pfam09631
Sen15 protein; The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two ...
 65-119 2.68e-12

Sen15 protein; The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this hetero-tetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly.


Pssm-ID: 462844  Cd Length: 101  Bit Score: 58.40  E-value: 2.68e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 188528677   65 LVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQT---VVPTPITASLSHNRI 119
Cdd:pfam09631   1 LVYLNLVHAQLWTDVEILSEEELQLVLLRGRPPKKLSNDDtewVLPVPLTESLSLEQL 58
 
Name Accession Description Interval E-value
Sen15 pfam09631
Sen15 protein; The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two ...
 65-119 2.68e-12

Sen15 protein; The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this hetero-tetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly.


Pssm-ID: 462844  Cd Length: 101  Bit Score: 58.40  E-value: 2.68e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 188528677   65 LVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQT---VVPTPITASLSHNRI 119
Cdd:pfam09631   1 LVYLNLVHAQLWTDVEILSEEELQLVLLRGRPPKKLSNDDtewVLPVPLTESLSLEQL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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