NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|186499096|ref|NP_001118258|]
View 

ureide permease 3 [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Ureide_permease super family cl09426
Ureide permease; Heterocyclic nitrogen compounds may serve as nitrogen sources or nitrogen ...
1-171 5.98e-101

Ureide permease; Heterocyclic nitrogen compounds may serve as nitrogen sources or nitrogen transport compounds in plants that are not able to fix nitrogen. This family represents ureide permease, a transporter of a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine; it has 10 putative transmembrane domains with a large cytosolic central domain containing a 'Walker A' motif. Ureide permease is likely to transport other purine degradation products when nitrogen sources are low. Transport is dependent on glucose and a proton gradient. The family is found in bacteria, plants and yeast. These transporters are constituted of two sets of 5xTMs.


The actual alignment was detected with superfamily member pfam07168:

Pssm-ID: 462111  Cd Length: 360  Bit Score: 294.70  E-value: 5.98e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186499096    1 MFAMAGGIFLSLGTLATQYAWAFVGLSVTEVITASIAVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNA 80
Cdd:pfam07168  46 LFAMAGGIVLSLGNLATQYAWAFVGLSVTEVIASSITVVIGTTLNYFLDDRINKAEILFPGVGCFLIAVCLGSAVHSSNA 125
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186499096   81 ADNKSKLQGFKSLETT----SSFQMETSSIKE------------GKAKVGTADFLIEVEKQRAIKVFGKSTIIGLAITFF 144
Cdd:pfam07168 126 ADNKAKLSASPSDYSAetggSTNLGESVEKKPedlengepvtaaEKAKAGTAEFLIELENKRAIKVLGSSTLIGLGITFF 205
                         170       180
                  ....*....|....*....|....*..
gi 186499096  145 AGICFSLISPAVSLATNDQWHTLKHGV 171
Cdd:pfam07168 206 AGICFSLFSPAFNLATNDQWHTLKPGV 232
 
Name Accession Description Interval E-value
Ureide_permease pfam07168
Ureide permease; Heterocyclic nitrogen compounds may serve as nitrogen sources or nitrogen ...
1-171 5.98e-101

Ureide permease; Heterocyclic nitrogen compounds may serve as nitrogen sources or nitrogen transport compounds in plants that are not able to fix nitrogen. This family represents ureide permease, a transporter of a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine; it has 10 putative transmembrane domains with a large cytosolic central domain containing a 'Walker A' motif. Ureide permease is likely to transport other purine degradation products when nitrogen sources are low. Transport is dependent on glucose and a proton gradient. The family is found in bacteria, plants and yeast. These transporters are constituted of two sets of 5xTMs.


Pssm-ID: 462111  Cd Length: 360  Bit Score: 294.70  E-value: 5.98e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186499096    1 MFAMAGGIFLSLGTLATQYAWAFVGLSVTEVITASIAVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNA 80
Cdd:pfam07168  46 LFAMAGGIVLSLGNLATQYAWAFVGLSVTEVIASSITVVIGTTLNYFLDDRINKAEILFPGVGCFLIAVCLGSAVHSSNA 125
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186499096   81 ADNKSKLQGFKSLETT----SSFQMETSSIKE------------GKAKVGTADFLIEVEKQRAIKVFGKSTIIGLAITFF 144
Cdd:pfam07168 126 ADNKAKLSASPSDYSAetggSTNLGESVEKKPedlengepvtaaEKAKAGTAEFLIELENKRAIKVLGSSTLIGLGITFF 205
                         170       180
                  ....*....|....*....|....*..
gi 186499096  145 AGICFSLISPAVSLATNDQWHTLKHGV 171
Cdd:pfam07168 206 AGICFSLFSPAFNLATNDQWHTLKPGV 232
 
Name Accession Description Interval E-value
Ureide_permease pfam07168
Ureide permease; Heterocyclic nitrogen compounds may serve as nitrogen sources or nitrogen ...
1-171 5.98e-101

Ureide permease; Heterocyclic nitrogen compounds may serve as nitrogen sources or nitrogen transport compounds in plants that are not able to fix nitrogen. This family represents ureide permease, a transporter of a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine; it has 10 putative transmembrane domains with a large cytosolic central domain containing a 'Walker A' motif. Ureide permease is likely to transport other purine degradation products when nitrogen sources are low. Transport is dependent on glucose and a proton gradient. The family is found in bacteria, plants and yeast. These transporters are constituted of two sets of 5xTMs.


Pssm-ID: 462111  Cd Length: 360  Bit Score: 294.70  E-value: 5.98e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186499096    1 MFAMAGGIFLSLGTLATQYAWAFVGLSVTEVITASIAVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNA 80
Cdd:pfam07168  46 LFAMAGGIVLSLGNLATQYAWAFVGLSVTEVIASSITVVIGTTLNYFLDDRINKAEILFPGVGCFLIAVCLGSAVHSSNA 125
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186499096   81 ADNKSKLQGFKSLETT----SSFQMETSSIKE------------GKAKVGTADFLIEVEKQRAIKVFGKSTIIGLAITFF 144
Cdd:pfam07168 126 ADNKAKLSASPSDYSAetggSTNLGESVEKKPedlengepvtaaEKAKAGTAEFLIELENKRAIKVLGSSTLIGLGITFF 205
                         170       180
                  ....*....|....*....|....*..
gi 186499096  145 AGICFSLISPAVSLATNDQWHTLKHGV 171
Cdd:pfam07168 206 AGICFSLFSPAFNLATNDQWHTLKPGV 232
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH