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Conserved domains on  [gi|186288304|ref|NP_001118239|]
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ubiquinol-cytochrome c reductase complex assembly factor 5 [Homo sapiens]

Protein Classification

small integral membrane protein 4( domain architecture ID 10633450)

small integral membrane protein 4 (SMIM4)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UPF0640 pfam15114
Uncharacterized protein family UPF0640; This family of proteins is functionally ...
 4-68 1.31e-31

Uncharacterized protein family UPF0640; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 70 and 80 amino acids in length. There are two conserved sequence motifs: PGK and YRFLP.


:

Pssm-ID: 464511  Cd Length: 66  Bit Score: 104.34  E-value: 1.31e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 186288304   4 RAQVRRILQRVPGKQRFGIYRFLPFFFVLGGTMEWIMIKVRVGQETFYDVYRRKASERQYQRRLE 68
Cdd:pfam15114  2 SRLVRRLLDLWPGKRRFGIYRFLPLFFVLGAALEWSMINWRVGEENFYDTYKRRQAERLYEERLE 66
 
Name Accession Description Interval E-value
UPF0640 pfam15114
Uncharacterized protein family UPF0640; This family of proteins is functionally ...
 4-68 1.31e-31

Uncharacterized protein family UPF0640; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 70 and 80 amino acids in length. There are two conserved sequence motifs: PGK and YRFLP.


Pssm-ID: 464511  Cd Length: 66  Bit Score: 104.34  E-value: 1.31e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 186288304   4 RAQVRRILQRVPGKQRFGIYRFLPFFFVLGGTMEWIMIKVRVGQETFYDVYRRKASERQYQRRLE 68
Cdd:pfam15114  2 SRLVRRLLDLWPGKRRFGIYRFLPLFFVLGAALEWSMINWRVGEENFYDTYKRRQAERLYEERLE 66
 
Name Accession Description Interval E-value
UPF0640 pfam15114
Uncharacterized protein family UPF0640; This family of proteins is functionally ...
 4-68 1.31e-31

Uncharacterized protein family UPF0640; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 70 and 80 amino acids in length. There are two conserved sequence motifs: PGK and YRFLP.


Pssm-ID: 464511  Cd Length: 66  Bit Score: 104.34  E-value: 1.31e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 186288304   4 RAQVRRILQRVPGKQRFGIYRFLPFFFVLGGTMEWIMIKVRVGQETFYDVYRRKASERQYQRRLE 68
Cdd:pfam15114  2 SRLVRRLLDLWPGKRRFGIYRFLPLFFVLGAALEWSMINWRVGEENFYDTYKRRQAERLYEERLE 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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