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Conserved domains on  [gi|157822309|ref|NP_001102148|]
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uncharacterized protein C1orf122 homolog [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4726 super family cl24431
Domain of unknown function (DUF4726); This family of proteins is found in vertebrates. ...
 10-110 1.51e-40

Domain of unknown function (DUF4726); This family of proteins is found in vertebrates. Proteins in this family are typically between 40 and 110 amino acids in length.


The actual alignment was detected with superfamily member pfam15855:

Pssm-ID: 318139  Cd Length: 101  Bit Score: 129.94  E-value: 1.51e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822309   10 SRGEAAGVDRGKAGLGLGGRPPPQPPRDERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGNGSAKSGASP 89
Cdd:pfam15855   1 SRGEAAGVDRGKAGLGLGGRPPPQPPRDERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGNVSAKPGAPP 80

                          90       100
                  ....*....|....*....|.
gi 157822309   90 QPSVSTRGGLPKDAGDGAAES 110
Cdd:pfam15855  81 QPAVSARGGFPKDAGDGAAEP 101
 
Name Accession Description Interval E-value
DUF4726 pfam15855
Domain of unknown function (DUF4726); This family of proteins is found in vertebrates. ...
 10-110 1.51e-40

Domain of unknown function (DUF4726); This family of proteins is found in vertebrates. Proteins in this family are typically between 40 and 110 amino acids in length.


Pssm-ID: 318139  Cd Length: 101  Bit Score: 129.94  E-value: 1.51e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822309   10 SRGEAAGVDRGKAGLGLGGRPPPQPPRDERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGNGSAKSGASP 89
Cdd:pfam15855   1 SRGEAAGVDRGKAGLGLGGRPPPQPPRDERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGNVSAKPGAPP 80

                          90       100
                  ....*....|....*....|.
gi 157822309   90 QPSVSTRGGLPKDAGDGAAES 110
Cdd:pfam15855  81 QPAVSARGGFPKDAGDGAAEP 101
 
Name Accession Description Interval E-value
DUF4726 pfam15855
Domain of unknown function (DUF4726); This family of proteins is found in vertebrates. ...
 10-110 1.51e-40

Domain of unknown function (DUF4726); This family of proteins is found in vertebrates. Proteins in this family are typically between 40 and 110 amino acids in length.


Pssm-ID: 318139  Cd Length: 101  Bit Score: 129.94  E-value: 1.51e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822309   10 SRGEAAGVDRGKAGLGLGGRPPPQPPRDERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGNGSAKSGASP 89
Cdd:pfam15855   1 SRGEAAGVDRGKAGLGLGGRPPPQPPRDERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGNVSAKPGAPP 80

                          90       100
                  ....*....|....*....|.
gi 157822309   90 QPSVSTRGGLPKDAGDGAAES 110
Cdd:pfam15855  81 QPAVSARGGFPKDAGDGAAEP 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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