|
Name |
Accession |
Description |
Interval |
E-value |
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
116-862 |
0e+00 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 1052.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 116 MAPTWLSDIPLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPGRRGRSWGLEGSQALSQQAEVIVRQLQELRRLEE 195
Cdd:pfam07111 1 MAPTWASDIPLVQSPGHQDVLERRLDTQRPTVTMWEQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 196 EVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAH 275
Cdd:pfam07111 81 EVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 276 EEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTW 355
Cdd:pfam07111 161 EEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTW 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 356 ELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKVFALMV 435
Cdd:pfam07111 241 ELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 436 QLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAE 515
Cdd:pfam07111 321 QLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 516 EQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPV----TDVS 591
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAppvdADLS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 592 LELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEE 671
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEE 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 672 AASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEAR 751
Cdd:pfam07111 561 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEAR 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 752 KEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDkKKSVVSSPRpPECSASAPVAAAVPTRESIKG 831
Cdd:pfam07111 641 KEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLD-KKSVVSSPR-PECSASAPIPAAVPTRESIKG 718
|
730 740 750
....*....|....*....|....*....|.
gi 157738615 832 SLSVLLDDLQDLSEAISKEEAVCQGDNLDRC 862
Cdd:pfam07111 719 SLTVLLDNLQGLSEAISREEAVCQEDNQDTC 749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
176-768 |
1.34e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 104.25 E-value: 1.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 176 LSQQAEV--IVRQLQ-ELRRLEEEVRLLRETSLQQkmRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEG 252
Cdd:COG1196 205 LERQAEKaeRYRELKeELKELEAELLLLKLRELEA--ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 253 SQRELEEVQRLHQE--QLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEA 330
Cdd:COG1196 283 LEEAQAEEYELLAElaRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 331 QVTLVENLRKYVGEQVpsevhsQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQpsds 410
Cdd:COG1196 363 AEEALLEAEAELAEAE------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE---- 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 411 lepeftrkcqslLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGA 490
Cdd:COG1196 433 ------------LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 491 KGLQLELSRAQEARRRWQQQTASAEEQLRlvvnavsssqIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARK 570
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVL----------IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 571 LALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQ----LSARLIQQEVGRAREQGEAE-RQQLSKVAQQLEQELQ 645
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLReadaRYYVLGDTLLGRTLVAARLEaALRRAVTLAGRLREVT 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 646 QTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVS 725
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 157738615 726 LRQIQRRAAQEKERSQELRRLQEEARKEEGQR--LARRLQELERD 768
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLeeLERELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
183-801 |
3.19e-18 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 90.59 E-value: 3.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 183 IVRQLQELRRLEE-----EVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQ--- 254
Cdd:PTZ00121 1168 EARKAEDAKKAEAarkaeEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaee 1247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 255 -------RELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKS---LSSLETRRAGEAKELAEAQREAELLRKQLSKT 324
Cdd:PTZ00121 1248 ernneeiRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 325 QEDLEAQVTLVENLRKyVGEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRK 404
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKK-AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 405 VQPSDSLEPEfTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQlKGQVASLQEKVTSQSQEqAILQRSLQDKAAEVE 484
Cdd:PTZ00121 1407 ADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK-KAEEAKKAEEAKKKAEE-AKKADEAKKKAEEAK 1483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 485 VERMGAKGLQLELSRAQEARRRWQQQTASaeEQLRLVVNAVSSSQIWLETTMAKVEGAAAqlpSLNNRLSYAVRKVHTIR 564
Cdd:PTZ00121 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKA--DEAKKAEEAKKADEAKKAEEAKKADEAKK---AEEKKKADELKKAEELK 1558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 565 GLIARKLALAQLRQEScplpppvtDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQEL 644
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEE--------DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 645 QQTQESLASLGLQLEVARQGQQESTEEAASLRQEltqqqELYGQALQEKVAEVETRLREQlsdTERRLNEARREHAKAVV 724
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA-----EEAKKAEEDKKKAEEAKKAEE---DEKKAAEALKKEAEEAK 1702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 725 SLRQIQRRAAQEKERSQELRRLQEE---------ARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLP 795
Cdd:PTZ00121 1703 KAEELKKKEAEEKKKAEELKKAEEEnkikaeeakKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
....*.
gi 157738615 796 SLLDKK 801
Cdd:PTZ00121 1783 EELDEE 1788
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
174-748 |
2.76e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 2.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 174 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE--- 250
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEerl 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 251 ---EGSQRELEEVQRLHQEQLSSLtqahEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 327
Cdd:COG1196 319 eelEEELAELEEELEELEEELEEL----EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 328 LEAQVTLVENLRkyvgeqvpsevhsqtwELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQp 407
Cdd:COG1196 395 AAELAAQLEELE----------------EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE- 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 408 sdslepeftrkcqsllnrwREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVER 487
Cdd:COG1196 458 -------------------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 488 MGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPsLNNRLSYAVRKVHTIRGLI 567
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP-LDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 568 ARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQT 647
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 648 QESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLR 727
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP 757
|
570 580
....*....|....*....|.
gi 157738615 728 QIQRRAAQEKERSQELRRLQE 748
Cdd:COG1196 758 EPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
176-790 |
3.25e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 3.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 176 LSQQAEVIVRQLQ---ELRRLEEEVRLLRETSLQQKmrLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEG 252
Cdd:TIGR02168 205 LERQAEKAERYKElkaELRELELALLVLRLEELREE--LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 253 SQRELEEVQRLHQEQ--LSSLTQAHEEALSSLTSKAEGLEKSLSSLETRR-------AGEAKELAEAQREAELLRKQLSK 323
Cdd:TIGR02168 283 IEELQKELYALANEIsrLEQQKQILRERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 324 TQEDLEAQVTLVENLRKYVgEQVPSEVHSQTWEL-----ERQKLLETMQHLQEDRDSLHATAELL------------QVR 386
Cdd:TIGR02168 363 LEAELEELESRLEELEEQL-ETLRSKVAQLELQIaslnnEIERLEARLERLEDRRERLQQEIEELlkkleeaelkelQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 387 VQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSL------LNRWREKVFALmVQLKAQELEHSDSVKQLK-------G 453
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEEAEQALdaaereLAQLQARLDSL-ERLQENLEGFSEGVKALLknqsglsG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 454 QVASLQEKVTSQSQ-EQAI---LQRSLQ------DKAAEVEVERM-------------------GAKGLQLELSRAQEAR 504
Cdd:TIGR02168 521 ILGVLSELISVDEGyEAAIeaaLGGRLQavvvenLNAAKKAIAFLkqnelgrvtflpldsikgtEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 505 RRWQQQTASAEEQLRLVVNAVSSSQIWLETtmakVEGAAAQLPSLNNRLSYAVRKVHTIR--------------GLIARK 570
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKALSYLLGGVLVVDD----LDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaktnsSILERR 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 571 LALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLsARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQES 650
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ-LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 651 LASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAevetrLREQLSDTERRLNEARREHAKAVVSLRQIQ 730
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA-----LREALDELRAELTLLNEEAANLRERLESLE 830
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 731 RRAAQEKERSQELRRlQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRL 790
Cdd:TIGR02168 831 RRIAATERRLEDLEE-QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
194-767 |
2.50e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.41 E-value: 2.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 194 EEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEaEGLRaalagAEVVRKnLEEGsqRELEEVQRLhqEQLSSLTQ 273
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE-EARK-----AEDARK-AEEA--RKAEDAKRV--EIARKAED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 274 AHEEALSSLTSKAEGLEKSLSSLETRRAGEAKEL-----AEAQREAELLRK--QLSKTQEDLEAQ-VTLVENLRKYVGEQ 345
Cdd:PTZ00121 1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAedarkAEAARKAEEERKaeEARKAEDAKKAEaVKKAEEAKKDAEEA 1242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 346 VPSEvHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSL--EPEFTRKCQSLL 423
Cdd:PTZ00121 1243 KKAE-EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAkkKAEEAKKADEAK 1321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 424 NRWRE-KVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRS--------LQDKAAEV-EVERMGAKGL 493
Cdd:PTZ00121 1322 KKAEEaKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEeakkkadaAKKKAEEKkKADEAKKKAE 1401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 494 QL-----ELSRAQEARRRWQQQTASAEEQlRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRglia 568
Cdd:PTZ00121 1402 EDkkkadELKKAAAAKKKADEAKKKAEEK-KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK---- 1476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 569 RKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAER----------------QQ 632
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakkaeekkkadelkkaEE 1556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 633 LSKVAQQLEQELQQTQESLASLGL-QLEVARQGQQESTEEAASLR--------QELTQQQELYGQALQEKVAEVETRLRE 703
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALrKAEEAKKAEEARIEEVMKLYeeekkmkaEEAKKAEEAKIKAEELKKAEEEKKKVE 1636
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 157738615 704 QLSDTE----RRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRL-----ARRLQELER 767
Cdd:PTZ00121 1637 QLKKKEaeekKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeaeeAKKAEELKK 1709
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
132-770 |
3.77e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 3.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 132 HQDVSERRLDTQRPQVTMWERDVSSDRQEpgrrgrswgleGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRL 211
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDE-----------LAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 212 EAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEK 291
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 292 SLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYvGEQVPSEVHSQT----------------- 354
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF-SEGVKALLKNQSglsgilgvlselisvde 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 355 -WELERQKLL-ETMQHLQEDRDS--LHATAELLQVRVQSLTHILALQEEEltRKVQPSDSLEPEFTRKCQSLLNRWRE-- 428
Cdd:TIGR02168 534 gYEAAIEAALgGRLQAVVVENLNaaKKAIAFLKQNELGRVTFLPLDSIKG--TEIQGNDREILKNIEGFLGVAKDLVKfd 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 429 ----KVFALMVQL------------KAQELEHSDSVKQLKGQVASLQEKVT--SQSQEQAILQRSLQDKAAEVEVERMGA 490
Cdd:TIGR02168 612 pklrKALSYLLGGvlvvddldnaleLAKKLRPGYRIVTLDGDLVRPGGVITggSAKTNSSILERRREIEELEEKIEELEE 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 491 KGLQL--ELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLN-NRLSYAVRKVHTIRGLI 567
Cdd:TIGR02168 692 KIAELekALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSkELTELEAEIEELEERLE 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 568 ARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQ-LSARLIQQEVGRAREQGEAER-----QQLSKVAQQLE 641
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTlLNEEAANLRERLESLERRIAAterrlEDLEEQIEELS 851
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 642 QELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYgQALQEKVAEVETR---LREQLSDTERRLNEARRE 718
Cdd:TIGR02168 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-EELSEELRELESKrseLRRELEELREKLAQLELR 930
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 157738615 719 HAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKN 770
Cdd:TIGR02168 931 LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
450-797 |
4.23e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 4.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 450 QLKGQVASLQEKVtsqsqEQAILQRSLQDKAAEVEVERMGAK--GLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSS 527
Cdd:COG1196 197 ELERQLEPLERQA-----EKAERYRELKEELKELEAELLLLKlrELEAELEELEAELEELEAELEELEAELAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 528 SQIWLETTMAKVEGAAAQLPSLNNRLSyavRKVHTIRGLIARKLALAQLRQEscplpppvtdVSLELQQLREERNRLDAE 607
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELA---RLEQDIARLEERRRELEERLEE----------LEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 608 LQlsarLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELyg 687
Cdd:COG1196 339 LE----ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL-- 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 688 QALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELER 767
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350
....*....|....*....|....*....|
gi 157738615 768 DKNLMLATLQQEGLLSRYKQQRLLTVLPSL 797
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
171-718 |
3.16e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 3.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 171 EGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE 250
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 251 EGSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEA 330
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 331 QVTLVENLRKYvgeqvpsevhsqtwELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDS 410
Cdd:COG1196 462 LELLAELLEEA--------------ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 411 LEPEFTRKCQSLLNRwrekvfALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGA 490
Cdd:COG1196 528 VLIGVEAAYEAALEA------ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 491 KGLQLELSRAQEARRRWQQQTASAeeqlRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARK 570
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGR----TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 571 LALAQLRQEScplpppvtdVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQES 650
Cdd:COG1196 678 EAELEELAER---------LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157738615 651 LASLGLQLEVArqgqqESTEEAASLRQELTQQQELYG----QALQEkVAEVETR---LREQLSDterrLNEARRE 718
Cdd:COG1196 749 EEEALEELPEP-----PDLEELERELERLEREIEALGpvnlLAIEE-YEELEERydfLSEQRED----LEEARET 813
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
173-511 |
8.82e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 8.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 173 SQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEeg 252
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE-- 1562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 253 sQRELEEVQRLHQEQLSSLTQAH-----EEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 327
Cdd:PTZ00121 1563 -KKKAEEAKKAEEDKNMALRKAEeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 328 LEAQVTLVENLRKYVGEQVPSEVHSQTWELERQKLLETMQHLQEDRdslHATAELLQvrvqslthilalQEEELTRKVQP 407
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE---KKAAEALK------------KEAEEAKKAEE 1706
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 408 SDSLEPEFTRKCQSLLNRWREKvfalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEqaiLQRSLQDKAAEVEVER 487
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEEN------KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH---LKKEEEKKAEEIRKEK 1777
|
330 340
....*....|....*....|....
gi 157738615 488 MGAkgLQLELSRAQEARRRWQQQT 511
Cdd:PTZ00121 1778 EAV--IEEELDEEDEKRRMEVDKK 1799
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
174-767 |
8.85e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 8.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 174 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEA-LARAEKagraEAEGLRAALAGAEVVRKNLEEG 252
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEkLEELKE----ELESLEAELEELEAELEELESR 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 253 S---QRELEEVQRLHQEQLSSLTQAHEEaLSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREA-----ELLRKQLSKT 324
Cdd:TIGR02168 374 LeelEEQLETLRSKVAQLELQIASLNNE-IERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqaelEELEEELEEL 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 325 QEDLEAQVTLVENLRKYVgEQVPSEVHSQTWELE----RQKLLETMQHLQEDRDSLHAT---------------AELLQV 385
Cdd:TIGR02168 453 QEELERLEEALEELREEL-EEAEQALDAAERELAqlqaRLDSLERLQENLEGFSEGVKAllknqsglsgilgvlSELISV 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 386 RVQSLTHILALQEEELTRKVQPSDslepEFTRKCQSLL--NRWREKVFALMVQLKAQELE--HSDSVKQLKGQVASLQEK 461
Cdd:TIGR02168 532 DEGYEAAIEAALGGRLQAVVVENL----NAAKKAIAFLkqNELGRVTFLPLDSIKGTEIQgnDREILKNIEGFLGVAKDL 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 462 VTSQSQEQAILQRSLQ--------DKAAEV-------------EVERMGAKGL---------QLELSRAQEARRRWQQQT 511
Cdd:TIGR02168 608 VKFDPKLRKALSYLLGgvlvvddlDNALELakklrpgyrivtlDGDLVRPGGVitggsaktnSSILERRREIEELEEKIE 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 512 ASAEEqlrlvvnavsssqiwLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLI-ARKLALAQLRQESCPLPPPVTDV 590
Cdd:TIGR02168 688 ELEEK---------------IAELEKALAELRKELEELEEELEQLRKELEELSRQIsALRKDLARLEAEVEQLEERIAQL 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 591 SLELQQLREERNRLDAEL-QLSARLIQQEVGRAREQGEAERQQ------------LSKVAQQLEQELQQTQESLASLGLQ 657
Cdd:TIGR02168 753 SKELTELEAEIEELEERLeEAEEELAEAEAEIEELEAQIEQLKeelkalrealdeLRAELTLLNEEAANLRERLESLERR 832
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 658 LEVARQGQQESTEEAASLRQE---LTQQQELYGQALQEKVAEVEtRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAA 734
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDiesLAAEIEELEELIEELESELE-ALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
650 660 670
....*....|....*....|....*....|...
gi 157738615 735 QEKERSQELRRLQEEARKEEGQRLARRLQELER 767
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
182-804 |
1.98e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 1.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 182 VIVRQLQELRRLEEEvrllRETSLQ-QKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRknleEGSQRELEEV 260
Cdd:TIGR02169 192 IIDEKRQQLERLRRE----REKAERyQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEL----EKLTEEISEL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 261 QRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRK 340
Cdd:TIGR02169 264 EKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 341 YVGEqvpsevhsqtWELERQKLLETMQHLQEDRdslhataELLQVRVQSLTHILALQEEELTRKVQPSDSLepefTRKCQ 420
Cdd:TIGR02169 344 EIEE----------ERKRRDKLTEEYAELKEEL-------EDLRAELEEVDKEFAETRDELKDYREKLEKL----KREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 421 SLlNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRA 500
Cdd:TIGR02169 403 EL-KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 501 QEARRRWQQQTASAEEQLRLVVNAVSSS---QIWLETTMAKVEGAAAQLPS------------LNNRLSYAVRK-----V 560
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGGravEEVLKASIQGVHGTVAQLGSvgeryataievaAGNRLNNVVVEddavaK 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 561 HTIRGLIARK------LALAQLRQESCPLPPP----VTDVSLELQQLREER--------------NRLDA--ELQLSARL 614
Cdd:TIGR02169 562 EAIELLKRRKagratfLPLNKMRDERRDLSILsedgVIGFAVDLVEFDPKYepafkyvfgdtlvvEDIEAarRLMGKYRM 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 615 IQQ-----EVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQEL------TQQQ 683
Cdd:TIGR02169 642 VTLegelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELsdasrkIGEI 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 684 ELYGQAL---QEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKE---------RSQELRRLQEEAR 751
Cdd:TIGR02169 722 EKEIEQLeqeEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEalndlearlSHSRIPEIQAELS 801
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 157738615 752 K--EEGQRLARRLQELERDknlmLATLQQEGLLSRYKQQRLLTVLPSLLDKKKSV 804
Cdd:TIGR02169 802 KleEEVSRIEARLREIEQK----LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
181-728 |
2.50e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 2.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 181 EVIVRQLQELRRLEEEVRLLREtsLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEgsqrELEEV 260
Cdd:COG4913 255 EPIRELAERYAAARERLAELEY--LRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALRE----ELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 261 QRLHQ-------EQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 333
Cdd:COG4913 329 EAQIRgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 334 LVENLRKYVGEQVpSEVHSQTWELERQKL-----LETM-----QHLQEDRDSLHATAELLQVRvqslthilalQEEE--- 400
Cdd:COG4913 409 EAEAALRDLRREL-RELEAEIASLERRKSniparLLALrdalaEALGLDEAELPFVGELIEVR----------PEEErwr 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 401 -----------LTRKVQPSDslEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSvkqlkgqvASLQEKVTSQSQE- 468
Cdd:COG4913 478 gaiervlggfaLTLLVPPEH--YAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDP--------DSLAGKLDFKPHPf 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 469 QAILQRSLQDKAAEVEVE-----RMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVsssqiwlettmAKVEGAA 543
Cdd:COG4913 548 RAWLEAELGRRFDYVCVDspeelRRHPRAITRAGQVKGNGTRHEKDDRRRIRSRYVLGFDNR-----------AKLAALE 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 544 AQLPSLNNRLSYA---VRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLiQQEVG 620
Cdd:COG4913 617 AELAELEEELAEAeerLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAAL-EEQLE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 621 RAREQGEAERQQLSKVaqqleqelqqtQESLASLGLQLEVARQGQQESTE--EAASLRQELTQQQELYGQALQEKVAEVE 698
Cdd:COG4913 696 ELEAELEELEEELDEL-----------KGEIGRLEKELEQAEEELDELQDrlEAAEDLARLELRALLEERFAAALGDAVE 764
|
570 580 590
....*....|....*....|....*....|
gi 157738615 699 TRLREQLSDTERRLNEARREHAKAVVSLRQ 728
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELERAMR 794
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
174-779 |
2.52e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 2.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 174 QALSQQAEVIVRQLQELR--RLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKN-LE 250
Cdd:COG4913 265 AAARERLAELEYLRAALRlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEqLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 251 ---EGSQRELEEVQRLHQEQLSSLTQAHEEALSSltskAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 327
Cdd:COG4913 345 reiERLERELEERERRRARLEALLAALGLPLPAS----AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 328 LEAQVTLVENLRKyVGEQVPSEVHsqtwelERQKLLEtmQHLQEDRDSLHATAELLQVR---------VQSLTHILAL-- 396
Cdd:COG4913 421 LRELEAEIASLER-RKSNIPARLL------ALRDALA--EALGLDEAELPFVGELIEVRpeeerwrgaIERVLGGFALtl 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 397 -----QEEELTR--------------KVQPSDSLEPEFTRKCQSLLNR--WREKVFALMVQlkaQELEHS------DSVK 449
Cdd:COG4913 492 lvppeHYAAALRwvnrlhlrgrlvyeRVRTGLPDPERPRLDPDSLAGKldFKPHPFRAWLE---AELGRRfdyvcvDSPE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 450 QLK---------GQV---ASLQEK-VTSQSQEQAILQRSLQDKAAEVEVERmgaKGLQLELSRAQEARRRWQQQTASAEE 516
Cdd:COG4913 569 ELRrhpraitraGQVkgnGTRHEKdDRRRIRSRYVLGFDNRAKLAALEAEL---AELEEELAEAEERLEALEAELDALQE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 517 QLRL--VVNAVSSSQIwlettmaKVEGAAAQLPSLNNRLsyavrkvhtiRGLIARKLALAQLRQEscplpppVTDVSLEL 594
Cdd:COG4913 646 RREAlqRLAEYSWDEI-------DVASAEREIAELEAEL----------ERLDASSDDLAALEEQ-------LEELEAEL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 595 QQLREERNRLDAElqlsARLIQQEVGRAREQGEAERQQLSKVAqqleqelqqtqeSLASLGLQLEVARQGQQESTEEA-A 673
Cdd:COG4913 702 EELEEELDELKGE----IGRLEKELEQAEEELDELQDRLEAAE------------DLARLELRALLEERFAAALGDAVeR 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 674 SLRQELTQQQElygqALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRaaqekersqeLRRLQEEARKE 753
Cdd:COG4913 766 ELRENLEERID----ALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLAL----------LDRLEEDGLPE 831
|
650 660
....*....|....*....|....*..
gi 157738615 754 EGQRLARRLQELE-RDKNLMLATLQQE 779
Cdd:COG4913 832 YEERFKELLNENSiEFVADLLSKLRRA 858
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
183-541 |
4.41e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 4.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 183 IVRQLQELRRLEEevrLLRETSLQQKmRLEAQAmeleALARAEKAGRAEAEGLRAALAGAEVVRKNleegsqRELEEVQr 262
Cdd:TIGR02168 181 LERTRENLDRLED---ILNELERQLK-SLERQA----EKAERYKELKAELRELELALLVLRLEELR------EELEELQ- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 263 lhqEQLSSLTQAHEEalssLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKyv 342
Cdd:TIGR02168 246 ---EELKEAEEELEE----LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER-- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 343 geqvpsevhsqtwelERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFtRKCQSL 422
Cdd:TIGR02168 317 ---------------QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL-EELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 423 LNRWREKVFalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKA-----AEVEVERMGAKGLQLEL 497
Cdd:TIGR02168 381 LETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkelqAELEELEEELEELQEEL 456
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 157738615 498 SRAQEARRRWQQQTASAEEQLRLV---VNAVSSSQIWLETTMAKVEG 541
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAereLAQLQARLDSLERLQENLEG 503
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
175-788 |
1.52e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 1.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 175 ALSQQAEVIVRQLQELRRLEEEVRLLREtslqQKMRLEaqamELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEegsQ 254
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDARE----QIELLE----PIRELAERYAAARERLAELEYLRAALRLWFAQRR---L 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 255 RELEEVQRLHQEQLssltQAHEEALSSLTSKAEGLEKSLSSLETRRAG-EAKELAEAQREAELLRKQLSKTQEDLEAQVT 333
Cdd:COG4913 291 ELLEAELEELRAEL----ARLEAELERLEARLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEERERRRARLEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 334 LVENLrkyvGEQVPSEvhSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRkVQPSDSLEP 413
Cdd:COG4913 367 LLAAL----GLPLPAS--AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS-LERRKSNIP 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 414 EFTRKCQSLLNR---WRE---KVFALMVQLKAQELEHSDSV-KQLKGQVASLqekvtsqsqeqaILQRSLQDKAAEVeVE 486
Cdd:COG4913 440 ARLLALRDALAEalgLDEaelPFVGELIEVRPEEERWRGAIeRVLGGFALTL------------LVPPEHYAAALRW-VN 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 487 RMGAKGlQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMA------KVEgAAAQLpslnNRLSYAVrkv 560
Cdd:COG4913 507 RLHLRG-RLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGrrfdyvCVD-SPEEL----RRHPRAI--- 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 561 hTIRGLIARKLALAQLRQESCPLPPPVT--DVSLELQQLREERNRLDAELqlsarliqQEVGRAREQGEAERQQLSKVAQ 638
Cdd:COG4913 578 -TRAGQVKGNGTRHEKDDRRRIRSRYVLgfDNRAKLAALEAELAELEEEL--------AEAEERLEALEAELDALQERRE 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 639 QLEQELQQTQESLASLGLQLEVARQGQQ-ESTEEAASLRQELTQQQElygqALQEKVAEVETRLREqLSDTERRLNEARR 717
Cdd:COG4913 649 ALQRLAEYSWDEIDVASAEREIAELEAElERLDASSDDLAALEEQLE----ELEAELEELEEELDE-LKGEIGRLEKELE 723
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 157738615 718 EHAKAVVSLRQIQRRAAQEKERSQELR---RLQEEARKEEGQRLARRLQELERDKNLMLATLQQ--EGLLSRYKQQ 788
Cdd:COG4913 724 QAEEELDELQDRLEAAEDLARLELRALleeRFAAALGDAVERELRENLEERIDALRARLNRAEEelERAMRAFNRE 799
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
255-792 |
9.51e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 9.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 255 RELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQE--DLEAQV 332
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLlkQLRARI 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 333 TLVENLRKYVGEQVPSEVHSQTWElerqKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLE 412
Cdd:TIGR00618 270 EELRAQEAVLEETQERINRARKAA----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 413 PEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRslqdKAAEVEVERMGAKG 492
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQR----EQATIDTRTSAFRD 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 493 LQLELSRAQearrrwqqqtasAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQ-LPSLNNRLSYAVRKVHTIRGLIARKL 571
Cdd:TIGR00618 422 LQGQLAHAK------------KQQELQQRYAELCAAAITCTAQCEKLEKIHLQeSAQSLKEREQQLQTKEQIHLQETRKK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 572 AL-AQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQ--QEVGRAREQGEAERQQLSKVAQQLEQELQQTQ 648
Cdd:TIGR00618 490 AVvLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQtyAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 649 ESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVEtRLREQLSDTERRLNEAR--REHAKAVVSL 726
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR-KLQPEQDLQDVRLHLQQcsQELALKLTAL 648
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157738615 727 RQIQRRAAQEKERSQELRRLQEEARK-EEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLT 792
Cdd:TIGR00618 649 HALQLTLTQERVREHALSIRVLPKELlASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
502-779 |
1.13e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 502 EARRRWQ--QQTASAEEQLRLVVNAVSSSQIWLETtmAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLA-LAQLRQ 578
Cdd:TIGR02168 197 ELERQLKslERQAEKAERYKELKAELRELELALLV--LRLEELREELEELQEELKEAEEELEELTAELQELEEkLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 579 ESCPLPPPVTDVSLELQQLREERNRLDAELQ-LSARLIQ-----QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLA 652
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQiLRERLANlerqlEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 653 SLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVET--RLREQLSDTERRLNEARREHAKAVVSLRQIQ 730
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEieRLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 157738615 731 RRAAQEK--ERSQELRRLQE-----EARKEEGQRLARRLQELERDKNLMLATLQQE 779
Cdd:TIGR02168 435 LKELQAEleELEEELEELQEelerlEEALEELREELEEAEQALDAAERELAQLQAR 490
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
171-414 |
1.70e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 171 EGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE 250
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 251 --------EGSQRELEEVQRLHQEQLSSLtQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLS 322
Cdd:TIGR02169 786 arlshsriPEIQAELSKLEEEVSRIEARL-REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 323 KTQEDLEAQVTLVENLRKYVGEqvpsevhsqtWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELT 402
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGD----------LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS 934
|
250
....*....|..
gi 157738615 403 RKVQPSDSLEPE 414
Cdd:TIGR02169 935 EIEDPKGEDEEI 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
446-753 |
1.75e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 446 DSVKQLKGQVASLQEKVtsqsqEQAILQRSLQDKAAEVEVERmgakgLQLELSRAQEARRRWQQQTASAEEQLRLVVNAV 525
Cdd:TIGR02168 193 DILNELERQLKSLERQA-----EKAERYKELKAELRELELAL-----LVLRLEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 526 SSSQIWLETTMA-------KVEGAAAQLPSLNNRLS--------YAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDV 590
Cdd:TIGR02168 263 QELEEKLEELRLevseleeEIEELQKELYALANEISrleqqkqiLRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 591 SLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQEsLASLGLQLEVARQGQQESTE 670
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE-IERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 671 EAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEA 750
Cdd:TIGR02168 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
...
gi 157738615 751 RKE 753
Cdd:TIGR02168 502 EGF 504
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
241-788 |
2.52e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 241 GAEVVRKNLEEGS------QRELEEVQRLHQEQLSSLTQAheealssltskAEGLEKSLSSLETRRAGEAKELAEAQREA 314
Cdd:pfam15921 72 GKEHIERVLEEYShqvkdlQRRLNESNELHEKQKFYLRQS-----------VIDLQTKLQEMQMERDAMADIRRRESQSQ 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 315 ELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVpsevhsqtwELERQKLLETMQHLQEDRDslhataellqvrvqslthIL 394
Cdd:pfam15921 141 EDLRNQLQNTVHELEAAKCLKEDMLEDSNTQI---------EQLRKMMLSHEGVLQEIRS------------------IL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 395 ALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQvaslqekvtSQSQEQAILQR 474
Cdd:pfam15921 194 VDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSE---------SQNKIELLLQQ 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 475 SlQDKAAEVEVERmgakglQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPS--LNNR 552
Cdd:pfam15921 265 H-QDRIEQLISEH------EVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSelREAK 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 553 LSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQL----SARLIQQEVGRAREQGEA 628
Cdd:pfam15921 338 RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLekeqNKRLWDRDTGNSITIDHL 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 629 ERQQLSKVAQQLEQELQQTQESLASLGlQLE---VARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQ- 704
Cdd:pfam15921 418 RRELDDRNMEVQRLEALLKAMKSECQG-QMErqmAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSEr 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 705 -LSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLS 783
Cdd:pfam15921 497 tVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQ 576
|
....*
gi 157738615 784 RYKQQ 788
Cdd:pfam15921 577 LVGQH 581
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
187-714 |
3.19e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 187 LQELRRLEEEVRLLRETslqqkmrLEAQAMELEALARAEKAGRAEAEGLRAALAGAeVVRKNLEEGSQRELEEVQRLHQE 266
Cdd:PRK02224 250 REELETLEAEIEDLRET-------IAETEREREELAEEVRDLRERLEELEEERDDL-LAEAGLDDADAEAVEARREELED 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 267 QLSSLTQAHEE---ALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVG 343
Cdd:PRK02224 322 RDEELRDRLEEcrvAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 344 EqvpSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLThilALQEE----ELTRKVQPSDSLEPEFTRKC 419
Cdd:PRK02224 402 D---APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE---ALLEAgkcpECGQPVEGSPHVETIEEDRE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 420 QsllnrwREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRsLQDKAAEVEVERmgakglqlelSR 499
Cdd:PRK02224 476 R------VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEL-IAERRETIEEKR----------ER 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 500 AQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTmAKVEGAAAQLPSLNNRLsyavRKVHTIRGLIARKLALAQLRQE 579
Cdd:PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEV-AELNSKLAELKERIESL----ERIRTLLAAIADAEDEIERLRE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 580 SCPLPPPVTDVSLE-LQQLREERNRLDAELQLSArliqqeVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGlql 658
Cdd:PRK02224 614 KREALAELNDERRErLAEKRERKRELEAEFDEAR------IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIG--- 684
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 157738615 659 evarqGQQESTEEAASLRQELTQQQE-------LYGQA--LQEKVAEVETRLREQLSDT-ERRLNE 714
Cdd:PRK02224 685 -----AVENELEELEELRERREALENrvealeaLYDEAeeLESMYGDLRAELRQRNVETlERMLNE 745
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
279-790 |
4.03e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 4.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 279 LSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVgEQVPSEVHSQTWELE 358
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL-EELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 359 RQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHiLALQEEELTRKVQpsdslepeftrkcqsllnRWREKVFALMVQLK 438
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRE-LEEELEELEAELA------------------ELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 439 AQELEHsdsVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEvermgakGLQLELSRAQEARRRWQQQTASAEEQL 518
Cdd:COG4717 188 LATEEE---LQDLAEELEELQQRLAELEEELEEAQEELEELEEELE-------QLENELEAAALEERLKEARLLLLIAAA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 519 RLVVNAVSSSQIWLETTMAKVEGAAAQLPSLnnRLSYAVRKVHTIRGLIARKLALAQLRqescplpppvtdvSLELQQLR 598
Cdd:COG4717 258 LLALLGLGGSLLSLILTIAGVLFLVLGLLAL--LFLLLAREKASLGKEAEELQALPALE-------------ELEEEELE 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 599 EERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESL-ASLGLQLEVARQGQQESTEEAASLRQ 677
Cdd:COG4717 323 ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALlAEAGVEDEEELRAALEQAEEYQELKE 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 678 ELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEeaRKEEGQR 757
Cdd:COG4717 403 ELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAE--LLQELEE 480
|
490 500 510
....*....|....*....|....*....|....*.
gi 157738615 758 LARRLQELERD---KNLMLATLQQegLLSRYKQQRL 790
Cdd:COG4717 481 LKAELRELAEEwaaLKLALELLEE--AREEYREERL 514
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
174-802 |
8.55e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 8.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 174 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKagRAEAEGLRAALAGAEVVRKNLEEGS 253
Cdd:pfam02463 213 YQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEE--KLAQVLKENKEEEKEKKLQEEELKL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 254 QRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 333
Cdd:pfam02463 291 LAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQ 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 334 LVENLRKYVGE--QVPSEVHSQTWELERQKLLET------MQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKV 405
Cdd:pfam02463 371 LEEELLAKKKLesERLSSAAKLKEEELELKSEEEkeaqllLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 406 QPSDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQ-------------------LKGQVASLQEKVTSQS 466
Cdd:pfam02463 451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLeersqkeskarsglkvllaLIKDGVGGRIISAHGR 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 467 QEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQL 546
Cdd:pfam02463 531 LGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDK 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 547 PSLNNRLSYAVRKV-------HTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEV 619
Cdd:pfam02463 611 ATLEADEDDKRAKVvegilkdTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELA 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 620 GRA--REQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQEL--TQQQELYGQALQEKVA 695
Cdd:pfam02463 691 KEEilRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEekSRLKKEEKEEEKSELS 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 696 EVETRLREQLSDTERRLNEARREHAKAVV-----SLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKN 770
Cdd:pfam02463 771 LKEKELAEEREKTEKLKVEEEKEEKLKAQeeelrALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK 850
|
650 660 670
....*....|....*....|....*....|..
gi 157738615 771 LMLATLQQEGLLSRYKQQRLLTVLPSLLDKKK 802
Cdd:pfam02463 851 LAEEELERLEEEITKEELLQELLLKEEELEEQ 882
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
168-799 |
8.67e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 8.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 168 WGLEGSQALSQQAEVIVRQLQELRRLEEEVR-LLRETSLQQKMR------------------LEAQAMELEALARAEKAG 228
Cdd:TIGR00618 243 AYLTQKREAQEEQLKKQQLLKQLRARIEELRaQEAVLEETQERInrarkaaplaahikavtqIEQQAQRIHTELQSKMRS 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 229 RAEAEGLRAALAGAE---VVRKNLEEGSQRELEEVQRLHQEQLS---SLTQAHEE-----ALSSLTSKAEGLEKSLSS-L 296
Cdd:TIGR00618 323 RAKLLMKRAAHVKQQssiEEQRRLLQTLHSQEIHIRDAHEVATSireISCQQHTLtqhihTLQQQKTTLTQKLQSLCKeL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 297 ETRRAGEAKELAEAQREAEL------LRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTWELERQKLLETMQHLQ 370
Cdd:TIGR00618 403 DILQREQATIDTRTSAFRDLqgqlahAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIH 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 371 EDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEfTRKCQSLLNRWR------EKVFALMVQLKAQELEH 444
Cdd:TIGR00618 483 LQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPL-TRRMQRGEQTYAqletseEDVYHQLTSERKQRASL 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 445 SDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEarrrwQQQTASAEEQLRLVVNA 524
Cdd:TIGR00618 562 KEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR-----KLQPEQDLQDVRLHLQQ 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 525 VSSSQIWLETTMakvEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRL 604
Cdd:TIGR00618 637 CSQELALKLTAL---HALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHI 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 605 -----------DAELQLSARLIQQEVGRAREQGEAERQQLSK---------VAQQLEQELQQTQESLASLGLQLEVARQG 664
Cdd:TIGR00618 714 eeydrefneieNASSSLGSDLAAREDALNQSLKELMHQARTVlkarteahfNNNEEVTAALQTGAELSHLAAEIQFFNRL 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 665 QQESTEEAASLRQELTQQQELYGQAL---QEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQ 741
Cdd:TIGR00618 794 REEDTHLLKTLEAEIGQEIPSDEDILnlqCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQ 873
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157738615 742 ELRRLQEEARKE---EGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLD 799
Cdd:TIGR00618 874 LSDKLNGINQIKiqfDGDALIKFLHEITLYANVRLANQSEGRFHGRYADSHVNARKYQGLA 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-714 |
2.45e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 358 ERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRkcqslLNRWREKVFALMVQL 437
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 438 KAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQ 517
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 518 LRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSyavrkvhtirgliARKLALAQLRQEscplpppVTDVSLELQQL 597
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALA-------------LLRSELEELSEE-------LRELESKRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 598 REERNRLDAEL-QLSARL------IQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTE 670
Cdd:TIGR02168 914 RRELEELREKLaQLELRLeglevrIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIE 993
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 157738615 671 EAASL---RQELTQQQELYGQA---LQEKVAEVETRLREQLSDTERRLNE 714
Cdd:TIGR02168 994 EYEELkerYDFLTAQKEDLTEAketLEEAIEEIDREARERFKDTFDQVNE 1043
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
174-770 |
3.05e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 3.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 174 QALSQQAEVIVRQLQELRRLEEEVRLLREtslQQKMRLEAQAMELEALA-RAEKAGRAEAEGLRAALAGAEVVRKNLEeG 252
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEIS---ELEKRLEEIEQLLEELNkKIKDLGEEEQLRVKEKIGELEAEIASLE-R 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 253 SQRELEEVQRLHQEQLSSLtqahEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLsktqEDLEAQv 332
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKL----EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL----EEVDKE- 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 333 tlvenlrkyvgeqvpsevhSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLE 412
Cdd:TIGR02169 380 -------------------FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 413 PEFTRKcqsllnrwREKVfalmvqlKAQELEhsdsVKQLKGQVASLQEKVTSQSQEQAILQRSLQDkaaevevermgakg 492
Cdd:TIGR02169 441 EEKEDK--------ALEI-------KKQEWK----LEQLAADLSKYEQELYDLKEEYDRVEKELSK-------------- 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 493 LQLELSRAqEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEG--AAAQLPSLNNRLSYAVRK-----VHTIRG 565
Cdd:TIGR02169 488 LQRELAEA-EAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGEryATAIEVAAGNRLNNVVVEddavaKEAIEL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 566 LIARK------LALAQLRQESCPLPPP----VTDVSLELQQLrEERNRLDAELQLSARLIQQEVGRAREQG--------E 627
Cdd:TIGR02169 567 LKRRKagratfLPLNKMRDERRDLSILsedgVIGFAVDLVEF-DPKYEPAFKYVFGDTLVVEDIEAARRLMgkyrmvtlE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 628 AERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEkvaevetrlreqLSD 707
Cdd:TIGR02169 646 GELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE------------LSD 713
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157738615 708 TERRLNEARREhakavvsLRQIQRRAAQEKERSQELRRLQE------EARKEEGQRLARRLQELERDKN 770
Cdd:TIGR02169 714 ASRKIGEIEKE-------IEQLEQEEEKLKERLEELEEDLSsleqeiENVKSELKELEARIEELEEDLH 775
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
190-518 |
3.72e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.48 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 190 LRRLEEEVrlLRETSLQQKMR-LEAQAMELEALARAEKAGRAEAEGLRAALAGA-EVVRKNLEEG-----------SQRE 256
Cdd:pfam01576 249 LARLEEET--AQKNNALKKIReLEAQISELQEDLESERAARNKAEKQRRDLGEElEALKTELEDTldttaaqqelrSKRE 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 257 ---------LEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLrkQLSKTQed 327
Cdd:pfam01576 327 qevtelkkaLEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTL--QQAKQD-- 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 328 leaqvtlVENLRKYVGEQVpSEVHSQTWELERQKlletmqhlQEDRDSLHAtaelLQVRVQSLTHILALQEEELTRKVQP 407
Cdd:pfam01576 403 -------SEHKRKKLEGQL-QELQARLSESERQR--------AELAEKLSK----LQSELESVSSLLNEAEGKNIKLSKD 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 408 SDSLEPEFtRKCQSLLNrwrekvfalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVER 487
Cdd:pfam01576 463 VSSLESQL-QDTQELLQ-----------EETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMK 530
|
330 340 350
....*....|....*....|....*....|.
gi 157738615 488 MGAKGLQLELSRAQEARRRWQQQTASAEEQL 518
Cdd:pfam01576 531 KKLEEDAGTLEALEEGKKRLQRELEALTQQL 561
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
170-787 |
5.25e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 5.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 170 LEGSQALSQQAEVIVRQLQELrrLEEEVRLLRETSLQQKMRLEAQAMELE-ALARAEKAGRAEAEGLRAALAGAEVVRKN 248
Cdd:TIGR00618 231 LREALQQTQQSHAYLTQKREA--QEEQLKKQQLLKQLRARIEELRAQEAVlEETQERINRARKAAPLAAHIKAVTQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 249 LEEGSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDL 328
Cdd:TIGR00618 309 AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 329 EAQVTLvENLRKYVGEQVPSEVHSQTWELERQKLLE-TMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQP 407
Cdd:TIGR00618 389 TTLTQK-LQSLCKELDILQREQATIDTRTSAFRDLQgQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 408 SDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQELE--------HSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDK 479
Cdd:TIGR00618 468 LKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplcgsciHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDV 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 480 AAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLEttmaKVEGAAAQLPSLNNRLsyaVRK 559
Cdd:TIGR00618 548 YHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE----KLSEAEDMLACEQHAL---LRK 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 560 VHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREErnrldaELQLSARLIQQEVGRAREQGEAERQQLSKVAQQ 639
Cdd:TIGR00618 621 LQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR------EHALSIRVLPKELLASRQLALQKMQSEKEQLTY 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 640 LEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRlnearreh 719
Cdd:TIGR00618 695 WKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNN-------- 766
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157738615 720 AKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDknLMLATLQQEGLLSRYKQ 787
Cdd:TIGR00618 767 NEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSD--EDILNLQCETLVQEEEQ 832
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
249-790 |
6.79e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 6.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 249 LEEGSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKelaEAQREAELLRKQLSktqeDL 328
Cdd:pfam15921 250 LKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQNSMYMRQLS----DL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 329 EAQVTlveNLRKYVGEqVPSEVHSQTWELERQKLLET--MQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQ 406
Cdd:pfam15921 323 ESTVS---QLRSELRE-AKRMYEDKIEELEKQLVLANseLTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 407 PSDSLEPEFTRKCQSLLNRWRE------KVFALMVQLKAQElehSDSVKQLKGQVASLQ------EKVTSQSQEQAILQR 474
Cdd:pfam15921 399 QNKRLWDRDTGNSITIDHLRRElddrnmEVQRLEALLKAMK---SECQGQMERQMAAIQgkneslEKVSSLTAQLESTKE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 475 SLQDKAAEVEVERMGAKGLQL---ELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNN 551
Cdd:pfam15921 476 MLRKVVEELTAKKMTLESSERtvsDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKL 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 552 RLSYAVRKVHTIRGLIARKLAL--------AQLRQESCPLPPPVTDVSLELQQLREERNRLDAEL-QLSARLIQQEVG-- 620
Cdd:pfam15921 556 QMAEKDKVIEILRQQIENMTQLvgqhgrtaGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIrELEARVSDLELEkv 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 621 ----------RAREQGEAERQQLskvaqqlEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTqqqelygqaL 690
Cdd:pfam15921 636 klvnagserlRAVKDIKQERDQL-------LNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLK---------M 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 691 QEKVAEVETrlrEQLSDTERRLNEARREHAKAVVSL-RQIQRRAAQEKERSQELRRLQEEAR---------KEEGQRLAR 760
Cdd:pfam15921 700 QLKSAQSEL---EQTRNTLKSMEGSDGHAMKVAMGMqKQITAKRGQIDALQSKIQFLEEAMTnankekhflKEEKNKLSQ 776
|
570 580 590
....*....|....*....|....*....|
gi 157738615 761 RLQELERDKNLMLATLQqeglLSRYKQQRL 790
Cdd:pfam15921 777 ELSTVATEKNKMAGELE----VLRSQERRL 802
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
273-806 |
7.48e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 7.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 273 QAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVtlveNLRKYVGEQVPSEVHS 352
Cdd:pfam12128 247 QQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDEL----NGELSAADAAVAKDRS 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 353 QTWELERQKLletmQHLQEDRDSLHATAELL-QVRVQslthiLALQEEELTRKVQPSDSLEPEFTRKCQsllnrwrekvf 431
Cdd:pfam12128 323 ELEALEDQHG----AFLDADIETAAADQEQLpSWQSE-----LENLEERLKALTGKHQDVTAKYNRRRS----------- 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 432 aLMVQLKAQELEHSDsvkqlKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLEL-SRAQEARRRWQQQ 510
Cdd:pfam12128 383 -KIKEQNNRDIAGIK-----DKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLkSRLGELKLRLNQA 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 511 TASAEE--QLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTI-RGLIARKLALAQLRQescplpppv 587
Cdd:pfam12128 457 TATPELllQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAsRRLEERQSALDELEL--------- 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 588 tdvslelqQLREERNRLDAELQLSARLIQQEVGRAreqgeAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQE 667
Cdd:pfam12128 528 --------QLFPQAGTLLHFLRKEAPDWEQSIGKV-----ISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPE 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 668 STEEAASLRQELTQQQELYgQALQEKVAEVETRL---REQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELR 744
Cdd:pfam12128 595 WAASEEELRERLDKAEEAL-QSAREKQAAAEEQLvqaNGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKAL 673
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157738615 745 RLQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDKKKSVVS 806
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLK 735
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
189-362 |
9.21e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 9.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 189 ELRRLEEEVRLLREtslqQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQ------RELEEVQR 262
Cdd:PRK03918 215 ELPELREELEKLEK----EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleekvKELKELKE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 263 LHQE---------QLSSLTQAHEEALSSLTSKAEGLEKSLSSLET--RRAGE-AKELAEAQREAELLRKQLsKTQEDLEA 330
Cdd:PRK03918 291 KAEEyiklsefyeEYLDELREIEKRLSRLEEEINGIEERIKELEEkeERLEElKKKLKELEKRLEELEERH-ELYEEAKA 369
|
170 180 190
....*....|....*....|....*....|..
gi 157738615 331 QVTLVENLRKYVGEQVPSEVHSQTWELERQKL 362
Cdd:PRK03918 370 KKEELERLKKRLTGLTPEKLEKELEELEKAKE 401
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
272-812 |
1.11e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 272 TQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQlsktqedleAQVTLVENLRKyvGEQVPSEVH 351
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA---------EEARKAEDARK--AEEARKAED 1150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 352 SQTWELERQklLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEftRKCQSLLNRWREKVF 431
Cdd:PTZ00121 1151 AKRVEIARK--AEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEE--RKAEEARKAEDAKKA 1226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 432 -----ALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQL----------E 496
Cdd:PTZ00121 1227 eavkkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkkaeekkkadE 1306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 497 LSRAQEARRRWQQQTASAEEQLRLVVNAVSSSqiwlETTMAKVEGAAAQLPSLNNRLSYAVRKVHtirgliARKLALAQL 576
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKA----EEAKKAAEAAKAEAEAAADEAEAAEEKAE------AAEKKKEEA 1376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 577 RQESCPLPPPVTDV--SLELQQLREERNRLDAELQLSARLiQQEVGRAREQGEAERQ--QLSKVAQQLEQELQQTQESLA 652
Cdd:PTZ00121 1377 KKKADAAKKKAEEKkkADEAKKKAEEDKKKADELKKAAAA-KKKADEAKKKAEEKKKadEAKKKAEEAKKADEAKKKAEE 1455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 653 SLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQL---SDTERRLNEARR--EHAKAVVSLR 727
Cdd:PTZ00121 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAkkkADEAKKAEEAKKadEAKKAEEAKK 1535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 728 QIQRRAAQEKERSQELRRlQEEARKEEGQRLARRLQELERDKNLmlaTLQQEGLLSRYKQQRLLTVLPSLLDKKKSVVSS 807
Cdd:PTZ00121 1536 ADEAKKAEEKKKADELKK-AEELKKAEEKKKAEEAKKAEEDKNM---ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
....*
gi 157738615 808 PRPPE 812
Cdd:PTZ00121 1612 AKKAE 1616
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
573-790 |
1.27e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 573 LAQLRQEscplpppVTDVSLELQQLREERNRLDAELQLSARLIQ-QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESL 651
Cdd:COG3206 184 LPELRKE-------LEEAEAALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDAL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 652 ASLGLQLEVARQGQQESTeeaasLRQELTQQQELYG------QALQEKVAEVETRLREQLsdtERRLNEARREHAKAVVS 725
Cdd:COG3206 257 PELLQSPVIQQLRAQLAE-----LEAELAELSARYTpnhpdvIALRAQIAALRAQLQQEA---QRILASLEAELEALQAR 328
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157738615 726 LRQIQRRAAQEKERSQELRRLQeearkeegqrlaRRLQELERDKNLMLATLQQegLLSRYKQQRL 790
Cdd:COG3206 329 EASLQAQLAQLEARLAELPELE------------AELRRLEREVEVARELYES--LLQRLEEARL 379
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
174-332 |
1.51e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 174 QALSQQAEVIVRQLQELRRLEEE----VRLLRETSLQQKMRLEAQAMELEALARAEkagrAEAEGLRAALAGAEVVRKNL 249
Cdd:COG3096 508 QALAQRLQQLRAQLAELEQRLRQqqnaERLLEEFCQRIGQQLDAAEELEELLAELE----AQLEELEEQAAEAVEQRSEL 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 250 eegsQRELEEVQRLHQEqLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAkELAEAQREAELLRKQLSKTQEDLE 329
Cdd:COG3096 584 ----RQQLEQLRARIKE-LAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQ-QLLEREREATVERDELAARKQALE 657
|
...
gi 157738615 330 AQV 332
Cdd:COG3096 658 SQI 660
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
197-348 |
1.57e-04 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 44.65 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 197 VRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEgSQRELEEVQRLHQEQLSSLTQAhE 276
Cdd:COG1566 74 ARLDPTDLQAALAQAEAQLAAAEAQLARLEAELGAEAEIAAAEAQLAAAQAQLDL-AQRELERYQALYKKGAVSQQEL-D 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 277 EALSSLTSKAEGLEKSLSSLETRRAG--EAKELAEAQREAELLRKQLSKTQEDLE-AQVT-----LVENLRKYVGEQVPS 348
Cdd:COG1566 152 EARAALDAAQAQLEAAQAQLAQAQAGlrEEEELAAAQAQVAQAEAALAQAELNLArTTIRapvdgVVTNLNVEPGEVVSA 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-740 |
2.22e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 508 QQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLA-LAQLRQEscplppp 586
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAeLAELEKE------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 587 VTDVSLELQQLREERNRLDAELQLSARLIQQEVG-RAREQGEAER--QQLSKVAQQLEQELQQTQESLAslglQLEVARQ 663
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLlSPEDFLDAVRrlQYLKYLAPARREQAEELRADLA----ELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157738615 664 GQQESTEEAASLRQELTQQQELYGQALQEKvAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERS 740
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAER-QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
188-855 |
2.90e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 188 QELRRLEEEVRLLRETsLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELEEVQRLHQEQ 267
Cdd:pfam02463 166 RLKRKKKEALKKLIEE-TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 268 LSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEaqVTLVENLRKYVGEQVP 347
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE--RRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 348 SEVHS------------------------QTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTR 403
Cdd:pfam02463 323 KKKAEkelkkekeeieelekelkeleikrEAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 404 KVQPSDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQ---LKGQVASLQEKVTSQSQEQAILQRSLQDKA 480
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEkeeLEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 481 AEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAaqLPSLNNRLSYAVRKV 560
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAI--STAVIVEVSATADEV 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 561 HTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRA-------REQGEAERQQL 633
Cdd:pfam02463 561 EERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAkvvegilKDTELTKLKES 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 634 SKVAQQLEQELQQTQESLASLGL---QLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTER 710
Cdd:pfam02463 641 AKAKESGLRKGVSLEEGLAEKSEvkaSLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 711 RLNEARREHAKAvVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRL 790
Cdd:pfam02463 721 ELLADRVQEAQD-KINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQ 799
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157738615 791 LTVLPSLLDKKKSVVSSPRPPECSASAPVAAAVPTRESIKGSLSVLLDDLQDLSEAISKEEAVCQ 855
Cdd:pfam02463 800 EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT 864
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
174-631 |
2.98e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 174 QALSQQAEVIVRQLQELRRLEEEVRLLRE--TSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEvvrknlee 251
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAelEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELE-------- 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 252 gsqRELEEVQRLhQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQ 331
Cdd:COG4717 153 ---ERLEELREL-EEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 332 VTLVENlrkyvgEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSL 411
Cdd:COG4717 229 LEQLEN------ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 412 EPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAK 491
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 492 GLQ--LELSRAQEARRRWQQQTASAEEQLRLVVNAV--SSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLI 567
Cdd:COG4717 383 DEEelRAALEQAEEYQELKEELEELEEQLEELLGELeeLLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157738615 568 ARKL---ALAQLRQescplpppvtdvslELQQLREERNRLdAELQLSARLIQQEVGRAREQGEAERQ 631
Cdd:COG4717 463 EQLEedgELAELLQ--------------ELEELKAELREL-AEEWAALKLALELLEEAREEYREERL 514
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
176-768 |
4.04e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 4.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 176 LSQQAEVIVRQLQ----ELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALagaevvrKNLEE 251
Cdd:pfam15921 368 FSQESGNLDDQLQkllaDLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL-------KAMKS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 252 GSQRELEEVQRLHQEQLSSLtqaheEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQ 331
Cdd:pfam15921 441 ECQGQMERQMAAIQGKNESL-----EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAT 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 332 VTLVENLRKYVGEQvpsevhsqtwelerqklLETMQHLQEDRDSL-HATAELLQVRVQ-----SLTHILALQEEELTRKV 405
Cdd:pfam15921 516 NAEITKLRSRVDLK-----------------LQELQHLKNEGDHLrNVQTECEALKLQmaekdKVIEILRQQIENMTQLV 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 406 ----QPSDSLEPEFTRKCQSLLNRWREkvfalMVQLKAQELEHSDSVKQLKGQVASLQ-EKVTSQSQEQAILqRSLQDKA 480
Cdd:pfam15921 579 gqhgRTAGAMQVEKAQLEKEINDRRLE-----LQEFKILKDKKDAKIRELEARVSDLElEKVKLVNAGSERL-RAVKDIK 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 481 AEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVsssQIWLETTMAKVEGAAAQLPSLNNRLSYAVR-K 559
Cdd:pfam15921 653 QERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL---KMQLKSAQSELEQTRNTLKSMEGSDGHAMKvA 729
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 560 VHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAqq 639
Cdd:pfam15921 730 MGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVA-- 807
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 640 leqelqQTQESLASLGLQLEVARQGQQESTEEAASLR-QELTQQQELYGQALQEKvAEVETRLREQLSDTERRLNEARRE 718
Cdd:pfam15921 808 ------NMEVALDKASLQFAECQDIIQRQEQESVRLKlQHTLDVKELQGPGYTSN-SSMKPRLLQPASFTRTHSNVPSSQ 880
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 157738615 719 HAKAVVSLRQIQRRAAQEkERSQELRRLQEEARKEEGQRLARRLQELERD 768
Cdd:pfam15921 881 STASFLSHHSRKTNALKE-DPTRDLKQLLQELRSVINEEPTVQLSKAEDK 929
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
583-779 |
4.05e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 4.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 583 LPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEvgrareqgEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVAR 662
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAAL--------KKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 663 QGQQESTEEAASLRQELTQQQELYGQAL-----QEKVAEVETRLR-EQLSDTERRL------NEARREHAKAVVS-LRQI 729
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELAELLralyrLGRQPPLALLLSpEDFLDAVRRLqylkylAPARREQAEELRAdLAEL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 157738615 730 QRRAAQEKERSQELRRLQEEARKEEgqrlaRRLQELERDKNLMLATLQQE 779
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEER-----AALEALKAERQKLLARLEKE 207
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
165-346 |
5.22e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 165 GRSWGLEGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALaraekagRAEAEGLRaalagaev 244
Cdd:PRK00409 486 GKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEAL-------LKEAEKLK-------- 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 245 vrKNLEEgsqrELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLE--TRRAGEAKELAEAQREaelLRKQLS 322
Cdd:PRK00409 551 --EELEE----KKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQkgGYASVKAHELIEARKR---LNKANE 621
|
170 180
....*....|....*....|....
gi 157738615 323 KTQEDLEAQVTLVENLRkyVGEQV 346
Cdd:PRK00409 622 KKEKKKKKQKEKQEELK--VGDEV 643
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
174-340 |
5.45e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 5.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 174 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARA-EKAGRAE-------AEGLRAALAGAEVV 245
Cdd:COG4942 62 RRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRAlYRLGRQPplalllsPEDFLDAVRRLQYL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 246 RKNLEEgsQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQ 325
Cdd:COG4942 142 KYLAPA--RREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
170
....*....|....*
gi 157738615 326 EDLEAQVTLVENLRK 340
Cdd:COG4942 220 QEAEELEALIARLEA 234
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
256-496 |
5.53e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 5.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 256 ELEEVQRLHQEQLSSLTQaHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQ----------LSKTQ 325
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQ-NNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEnqsykqeiknLESQI 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 326 EDLEAQVTLVENLRKYVGEQVPS-EVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSL---THILALQEEEL 401
Cdd:TIGR04523 394 NDLESKIQNQEKLNQQKDEQIKKlQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLdntRESLETQLKVL 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 402 TRKV----QPSDSLEPEFTRKCQSLLnrwrekvfalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQ 477
Cdd:TIGR04523 474 SRSInkikQNLEQKQKELKSKEKELK------------KLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKIS 541
|
250
....*....|....*....
gi 157738615 478 DKAAEVEVERMGAKGLQLE 496
Cdd:TIGR04523 542 DLEDELNKDDFELKKENLE 560
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
357-624 |
6.53e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 6.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 357 LERQKLLETMQHLQEDRDSL---HATAELLQVRVQSLTHILALQEEELTRKVQPSDslepefTRKCQSLLNRWREkvfAL 433
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLeraHEALEDAREQIELLEPIRELAERYAAARERLAE------LEYLRAALRLWFA---QR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 434 MVQLKAQELEhsdsvkQLKGQVASLQEKVTSQSQEQAILQRSLQdkaaEVEVERMGAKG-----LQLELSRAQEARRRWQ 508
Cdd:COG4913 289 RLELLEAELE------ELRAELARLEAELERLEARLDALREELD----ELEAQIRGNGGdrleqLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 509 QQTASAEEQLR-LVVNAVSSSQIWLETtmakVEGAAAQLPSLNNRLSYAVRKVHTIRGliarklALAQLRQEscplpppV 587
Cdd:COG4913 359 RRRARLEALLAaLGLPLPASAEEFAAL----RAEAAALLEALEEELEALEEALAEAEA------ALRDLRRE-------L 421
|
250 260 270
....*....|....*....|....*....|....*..
gi 157738615 588 TDVSLELQQLREERNRLDAELQLSARLIQQEVGRARE 624
Cdd:COG4913 422 RELEAEIASLERRKSNIPARLLALRDALAEALGLDEA 458
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
239-470 |
8.86e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 8.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 239 LAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAHEEA------LSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQR 312
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEkallkqLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 313 EAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVpseVHSQTWELERQKLLETMQHLQEDRDSLhatAELLQVRVQSLTH 392
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLAL---LLSPEDFLDAVRRLQYLKYLAPARREQ---AEELRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157738615 393 ILALQEEELTRKVQPSDSLEPEftrkcQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQA 470
Cdd:COG4942 165 LRAELEAERAELEALLAELEEE-----RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
278-528 |
1.22e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 278 ALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQvpsevhsqtwel 357
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL------------ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 358 eRQKLLETMQHLQEDRDSLHATAELLQVRVQSLthILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKvfaLMVQL 437
Cdd:COG4942 82 -EAELAELEKEIAELRAELEAQKEELAELLRAL--YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE---QAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 438 KAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQ 517
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
250
....*....|.
gi 157738615 518 LRLVVNAVSSS 528
Cdd:COG4942 236 AAAAAERTPAA 246
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
181-784 |
1.34e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 181 EVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSqRELEEV 260
Cdd:PRK03918 148 EKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELR-EELEKL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 261 QRLHQ--EQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELaeaqREAELLRKQLSKTQEDLEAQVTLVENL 338
Cdd:PRK03918 227 EKEVKelEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI----EELEEKVKELKELKEKAEEYIKLSEFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 339 RKYVGEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHataELLQVRVQSLTHILALQE-----EELTRKVQPSDSLEP 413
Cdd:PRK03918 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE---ELKKKLKELEKRLEELEErhelyEEAKAKKEELERLKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 414 EFTrkcqsllNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVtsQSQEQAILQRSLQDKAAEV---EVERMGA 490
Cdd:PRK03918 380 RLT-------GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI--KELKKAIEELKKAKGKCPVcgrELTEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 491 KGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSsQIWLETTMAKVEGAAAQLPSLNNRLsyavrKVHTIRGLIARK 570
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEK-VLKKESELIKLKELAEQLKELEEKL-----KKYNLEELEKKA 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 571 LALAQLRQESCPLPPPVTDVSLELQQLREERNRLdAELQLSARLIQQEVG----RAREQG-------EAERQQLSKV--- 636
Cdd:PRK03918 525 EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL-AELEKKLDELEEELAellkELEELGfesveelEERLKELEPFyne 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 637 ---AQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLN 713
Cdd:PRK03918 604 yleLKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELE 683
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157738615 714 EARRehakavvSLRQIQRRAAQEKERSQELRRLQEEARKEEgqRLARRLQELeRDKNLMLATLQQEGLLSR 784
Cdd:PRK03918 684 ELEK-------RREEIKKTLEKLKEELEEREKAKKELEKLE--KALERVEEL-REKVKKYKALLKERALSK 744
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
586-789 |
1.37e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 586 PVTDVSLELQQLREERNRLDAELQ-LSARLIQQEVGRAREQGEAERQQLskvaqqleqelqqtqeslASLGLQLEVARQG 664
Cdd:COG4913 256 PIRELAERYAAARERLAELEYLRAaLRLWFAQRRLELLEAELEELRAEL------------------ARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 665 QQESTEEAASLRQELTQQQelyGQALQekvaevetRLREQLSDTERRLNEARREHAKAVVSLRQI--------------Q 730
Cdd:COG4913 318 LDALREELDELEAQIRGNG---GDRLE--------QLEREIERLERELEERERRRARLEALLAALglplpasaeefaalR 386
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 157738615 731 RRAAQEKERSQELRRLQEEARkeegQRLARRLQELERDknlmLATLQQEglLSRYKQQR 789
Cdd:COG4913 387 AEAAALLEALEEELEALEEAL----AEAEAALRDLRRE----LRELEAE--IASLERRK 435
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
175-410 |
1.43e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 175 ALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE---E 251
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEkeiA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 252 GSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLE------TRRAGEAKELAEAQREAELLRKQLSKTQ 325
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylaPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 326 EDLEAQVTLVENLRkyvgeqvpsevhsQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKV 405
Cdd:COG4942 174 AELEALLAELEEER-------------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
....*
gi 157738615 406 QPSDS 410
Cdd:COG4942 241 ERTPA 245
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
151-766 |
1.81e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 151 ERDVSSDRQEPGRRGRsWGLEGSQALSQQAevivrqLQELRRlEEEVRLLRETSLQQKMRL--EAQAMELEALARAEKAG 228
Cdd:PRK04863 280 ERRVHLEEALELRREL-YTSRRQLAAEQYR------LVEMAR-ELAELNEAESDLEQDYQAasDHLNLVQTALRQQEKIE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 229 RAEA--EGLRAALAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQ-----------------------AHEEALSSLT 283
Cdd:PRK04863 352 RYQAdlEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQladyqqaldvqqtraiqyqqavqALERAKQLCG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 284 SKAEGLEKSLSSLETRRAgEAKELAEAQREAEllrKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTWELERQ--- 360
Cdd:PRK04863 432 LPDLTADNAEDWLEEFQA-KEQEATEELLSLE---QKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRlre 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 361 -------------KLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSD-SLEPEFTRKCQSLLNRW 426
Cdd:PRK04863 508 qrhlaeqlqqlrmRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESlSESVSEARERRMALRQQ 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 427 REKVFALMVQLKAQE---LEHSDSVKQLKGQVASLQEkvTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLElsraQEA 503
Cdd:PRK04863 588 LEQLQARIQRLAARApawLAAQDALARLREQSGEEFE--DSQDVTEYMQQLLERERELTVERDELAARKQALD----EEI 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 504 RRRWQQQTASAEEQLRLV--VNAVSSSQIWLETTMAKVEGAAAQLPSLnnRLSYAVRKVhtirGLIARKLAlaqlRQESC 581
Cdd:PRK04863 662 ERLSQPGGSEDPRLNALAerFGGVLLSEIYDDVSLEDAPYFSALYGPA--RHAIVVPDL----SDAAEQLA----GLEDC 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 582 PlpppvTDVSL---ELQQLREerNRLDAELQLSArLIQQEVGRA-REQGEAERQQLSKVAQQLeqelqqtqeslaslglQ 657
Cdd:PRK04863 732 P-----EDLYLiegDPDSFDD--SVFSVEELEKA-VVVKIADRQwRYSRFPEVPLFGRAAREK----------------R 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 658 LEVARQGQQESTEEAASLRQELTQQQELYgQALQEKVA-----------EVETR-LREQLSDTERRLNEARREHakavvs 725
Cdd:PRK04863 788 IEQLRAEREELAERYATLSFDVQKLQRLH-QAFSRFIGshlavafeadpEAELRqLNRRRVELERALADHESQE------ 860
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 157738615 726 lRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELE 766
Cdd:PRK04863 861 -QQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIR 900
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
352-790 |
2.77e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 352 SQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKvqpsdSLEPEFTRKCQSLLNRWREKVF 431
Cdd:pfam02463 148 AMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQEL-----KLKEQAKKALEYYQLKEKLELE 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 432 ALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVErmgakglqlelSRAQEARRRWQQQT 511
Cdd:pfam02463 223 EEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEE-----------EKEKKLQEEELKLL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 512 ASAEEQLRLvvnavsssqiwlettmakvegaaaqlpslnNRLSYAVRKVHTIrgliaRKLALAQLRQEScplpppvtdVS 591
Cdd:pfam02463 292 AKEEEELKS------------------------------ELLKLERRKVDDE-----EKLKESEKEKKK---------AE 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 592 LELQQLREERNRLDAELQLSARLIQQ---EVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQES 668
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIKREAeeeEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 669 TEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNE--ARREHAKAVVSLRQIQRRAAQEKERSQELRRL 746
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELekQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 157738615 747 QEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRL 790
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRL 531
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
366-763 |
2.90e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 366 MQHLQEDRDSLHATAELLQVRVQSLTHILALQE--EELTRKVQPSDSLEPEFTRKCQSLlNRWREKVFALMVQLKAQElE 443
Cdd:PRK04863 275 MRHANERRVHLEEALELRRELYTSRRQLAAEQYrlVEMARELAELNEAESDLEQDYQAA-SDHLNLVQTALRQQEKIE-R 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 444 HSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQdkAAEVEVERmgakgLQLELSRAQEA-----RRRWQQQTA-----S 513
Cdd:PRK04863 353 YQADLEELEERLEEQNEVVEEADEQQEENEARAE--AAEEEVDE-----LKSQLADYQQAldvqqTRAIQYQQAvqaleR 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 514 AEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSY----------AVRKVHTIRGLIARKLALAQLRqESCPL 583
Cdd:PRK04863 426 AKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVaqaahsqfeqAYQLVRKIAGEVSRSEAWDVAR-ELLRR 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 584 PPPVTDVSLELQQLREERNRLDAELQLSARLIQ--QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVA 661
Cdd:PRK04863 505 LREQRHLAEQLQQLRMRLSELEQRLRQQQRAERllAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMAL 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 662 RQGQQESTEEaaslRQELTQQQELYgQALQEKVAevetRLREQLSDTErrlnearrEHAKAVVSLRQIQrraaQEKERSQ 741
Cdd:PRK04863 585 RQQLEQLQAR----IQRLAARAPAW-LAAQDALA----RLREQSGEEF--------EDSQDVTEYMQQL----LEREREL 643
|
410 420
....*....|....*....|..
gi 157738615 742 ELRRLQEEARKEEGQRLARRLQ 763
Cdd:PRK04863 644 TVERDELAARKQALDEEIERLS 665
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
654-804 |
3.04e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.23 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 654 LGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLsdterrLNEARREHAKAVVSLRQIQRRA 733
Cdd:PRK12705 17 LLGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQ------RQEARREREELQREEERLVQKE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157738615 734 AQEKERSQELrRLQEEARKEEGQRLARRLQEL-ERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDKKKSV 804
Cdd:PRK12705 91 EQLDARAEKL-DNLENQLEEREKALSARELELeELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQ 161
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
658-754 |
3.90e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 658 LEVARQGQQESTEEAASLRQELTQQQElygqALQEKVAEVETRLREQLSDTERR----LNEARREHAKAVVSLRQIQR-- 731
Cdd:PRK00409 525 LEELERELEQKAEEAEALLKEAEKLKE----ELEEKKEKLQEEEDKLLEEAEKEaqqaIKEAKKEADEIIKELRQLQKgg 600
|
90 100
....*....|....*....|....
gi 157738615 732 -RAAQEKERSQELRRLQEEARKEE 754
Cdd:PRK00409 601 yASVKAHELIEARKRLNKANEKKE 624
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
185-415 |
3.94e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 185 RQLQELRRLE-----EEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELee 259
Cdd:pfam17380 360 RELERIRQEEiameiSRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREV-- 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 260 vQRLHQEQLSSLTQAHEEALSSlTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLR 339
Cdd:pfam17380 438 -RRLEEERAREMERVRLEEQER-QQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR 515
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157738615 340 KYVgEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEE-ELTRKVQPSDSLEPEF 415
Cdd:pfam17380 516 KLL-EKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERErEMMRQIVESEKARAEY 591
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
658-790 |
3.95e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.19 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 658 LEVARQGQQE---STEEAASLRQeLTQQQELYGQALqekvAEVETRLREQLSdTERRLNEARREHAKAVVSLRQIQRRAA 734
Cdd:PRK10929 119 LEKSRQAQQEqdrAREISDSLSQ-LPQQQTEARRQL----NEIERRLQTLGT-PNTPLAQAQLTALQAESAALKALVDEL 192
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 735 QEKERS----QELRRLQEEARKEEGQRLARRLQELerdKNLMLATLQQEGLLSRYKQQRL 790
Cdd:PRK10929 193 ELAQLSannrQELARLRSELAKKRSQQLDAYLQAL---RNQLNSQRQREAERALESTELL 249
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
584-707 |
8.17e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 39.93 E-value: 8.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 584 PPPvtDVSLELQQLREERNRLDAELQLSARLIQQEVGRArEQGEAERQQLSKVAQQLEQELQQTQESLASLglqlevarq 663
Cdd:PRK11448 136 PPE--DPENLLHALQQEVLTLKQQLELQAREKAQSQALA-EAQQQELVALEGLAAELEEKQQELEAQLEQL--------- 203
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 157738615 664 gQQESTEEAASLRQELTQQQELYGQALQekVAEVETRL--REQLSD 707
Cdd:PRK11448 204 -QEKAAETSQERKQKRKEITDQAAKRLE--LSEEETRIliDQQLRK 246
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
172-775 |
9.45e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.64 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 172 GSQALSQQAEVIVRQLQELRRLEEEVrlLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEE 251
Cdd:TIGR00606 469 SSDRILELDQELRKAERELSKAEKNS--LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMD 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 252 GSQReLEEVQRLHQEQLSSL------TQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQ 325
Cdd:TIGR00606 547 KDEQ-IRKIKSRHSDELTSLlgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYE 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 326 EDL------EAQVTLVENLRKYVGEQ--------VPSEVHSQTWELER----------QKLLETMQHLQEDRDSLHATAE 381
Cdd:TIGR00606 626 DKLfdvcgsQDEESDLERLKEEIEKSskqramlaGATAVYSQFITQLTdenqsccpvcQRVFQTEAELQEFISDLQSKLR 705
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 382 LLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSLlNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEK 461
Cdd:TIGR00606 706 LAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEI-PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA 784
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 462 VTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRA-QEARRRWQQQ------TASAEEQLRLVVNAVSSSQIWLET 534
Cdd:TIGR00606 785 KVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTvQQVNQEKQEKqheldtVVSKIELNRKLIQDQQEQIQHLKS 864
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 535 TMAKVEGAAAQL-PSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSAR 613
Cdd:TIGR00606 865 KTNELKSEKLQIgTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVN 944
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 614 LIQQEVgrarEQGEAERQQL-SKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQ--------E 684
Cdd:TIGR00606 945 DIKEKV----KNIHGYMKDIeNKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKiqerwlqdN 1020
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 685 LYGQALQEKVAEVETRLREQLSDT-ERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQ 763
Cdd:TIGR00606 1021 LTLRKRENELKEVEEELKQHLKEMgQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAE 1100
|
650
....*....|..
gi 157738615 764 ELERDKNLMLAT 775
Cdd:TIGR00606 1101 EKYREMMIVMRT 1112
|
|
| ATP-synt_Fo_b |
cd06503 |
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex ... |
698-779 |
9.97e-03 |
|
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.
Pssm-ID: 349951 [Multi-domain] Cd Length: 132 Bit Score: 37.03 E-value: 9.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738615 698 ETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQ-----EKERSQELRRLQEEARKEEGQRLARRLQELERDKNLM 772
Cdd:cd06503 32 EEKIAESLEEAEKAKEEAEELLAEYEEKLAEARAEAQEiieeaRKEAEKIKEEILAEAKEEAERILEQAKAEIEQEKEKA 111
|
....*..
gi 157738615 773 LATLQQE 779
Cdd:cd06503 112 LAELRKE 118
|
|
| |
