|
Name |
Accession |
Description |
Interval |
E-value |
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
85-826 |
0e+00 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 1005.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 85 SNNVEMFPPSGHQDVSERRLDTQRPQVTMWERDVSSDRQEPGRRGRSWGLEGSQALSQQAEVIVRQLQELRRLEEEVRLL 164
Cdd:pfam07111 6 ASDIPLVQSPGHQDVLERRLDTQRPTVTMWEQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRLEEEVRLL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 165 RETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAHEEALS 244
Cdd:pfam07111 86 RETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEALS 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 245 SLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTWELERQ 324
Cdd:pfam07111 166 SLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTWELERQ 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 325 KLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQ 404
Cdd:pfam07111 246 ELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQ 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 405 ELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRL 484
Cdd:pfam07111 326 DLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKF 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 485 VVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPV----TDVSLELQQ 560
Cdd:pfam07111 406 VVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAppvdADLSLELEQ 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 561 LREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLR 640
Cdd:pfam07111 486 LREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLR 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 641 QELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQ 720
Cdd:pfam07111 566 QELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEGQ 645
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 721 RLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDkKKSVVSSPRpPECSASAPVAAAVPTRESIKGSLSVL 800
Cdd:pfam07111 646 RLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLD-KKSVVSSPR-PECSASAPIPAAVPTRESIKGSLTVL 723
|
730 740
....*....|....*....|....*.
gi 157738613 801 LDDLQDLSEAISKEEAVCQGDNLDRC 826
Cdd:pfam07111 724 LDNLQGLSEAISREEAVCQEDNQDTC 749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
140-732 |
1.65e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.40 E-value: 1.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 140 LSQQAEV--IVRQLQ-ELRRLEEEVRLLRETSLQQkmRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEG 216
Cdd:COG1196 205 LERQAEKaeRYRELKeELKELEAELLLLKLRELEA--ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 217 SQRELEEVQRLHQE--QLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEA 294
Cdd:COG1196 283 LEEAQAEEYELLAElaRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 295 QVTLVENLRKYVGEQVpsevhsQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQpsds 374
Cdd:COG1196 363 AEEALLEAEAELAEAE------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE---- 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 375 lepeftrkcqslLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGA 454
Cdd:COG1196 433 ------------LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 455 KGLQLELSRAQEARRRWQQQTASAEEQLRlvvnavsssqIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARK 534
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVL----------IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 535 LALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQ----LSARLIQQEVGRAREQGEAE-RQQLSKVAQQLEQELQ 609
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLReadaRYYVLGDTLLGRTLVAARLEaALRRAVTLAGRLREVT 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 610 QTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVS 689
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 157738613 690 LRQIQRRAAQEKERSQELRRLQEEARKEEGQR--LARRLQELERD 732
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLeeLERELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
147-765 |
2.79e-17 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 87.12 E-value: 2.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 147 IVRQLQELRRLEE-----EVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQ--- 218
Cdd:PTZ00121 1168 EARKAEDAKKAEAarkaeEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaee 1247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 219 -------RELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKS---LSSLETRRAGEAKELAEAQREAELLRKQLSKT 288
Cdd:PTZ00121 1248 ernneeiRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 289 QEDLEAQVTLVENLRKyVGEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRK 368
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKK-AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 369 VQPSDSLEPEfTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQlKGQVASLQEKVTSQSQEqAILQRSLQDKAAEVE 448
Cdd:PTZ00121 1407 ADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK-KAEEAKKAEEAKKKAEE-AKKADEAKKKAEEAK 1483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 449 VERMGAKGLQLELSRAQEARRRWQQQTASaeEQLRLVVNAVSSSQIWLETTMAKVEGAAAqlpSLNNRLSYAVRKVHTIR 528
Cdd:PTZ00121 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKA--DEAKKAEEAKKADEAKKAEEAKKADEAKK---AEEKKKADELKKAEELK 1558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 529 GLIARKLALAQLRQEScplpppvtDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQEL 608
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEE--------DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 609 QQTQESLASLGLQLEVARQGQQESTEEAASLRQEltqqqELYGQALQEKVAEVETRLREQlsdTERRLNEARREHAKAVV 688
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA-----EEAKKAEEDKKKAEEAKKAEE---DEKKAAEALKKEAEEAK 1702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 689 SLRQIQRRAAQEKERSQELRRLQEE---------ARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLP 759
Cdd:PTZ00121 1703 KAEELKKKEAEEKKKAEELKKAEEEnkikaeeakKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
....*.
gi 157738613 760 SLLDKK 765
Cdd:PTZ00121 1783 EELDEE 1788
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
138-712 |
2.10e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.22 E-value: 2.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 138 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE--- 214
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEerl 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 215 ---EGSQRELEEVQRLHQEQLSSLtqahEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 291
Cdd:COG1196 319 eelEEELAELEEELEELEEELEEL----EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 292 LEAQVTLVENLRkyvgeqvpsevhsqtwELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQp 371
Cdd:COG1196 395 AAELAAQLEELE----------------EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE- 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 372 sdslepeftrkcqsllnrwREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVER 451
Cdd:COG1196 458 -------------------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 452 MGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPsLNNRLSYAVRKVHTIRGLI 531
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP-LDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 532 ARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQT 611
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 612 QESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLR 691
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP 757
|
570 580
....*....|....*....|.
gi 157738613 692 QIQRRAAQEKERSQELRRLQE 712
Cdd:COG1196 758 EPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
141-754 |
7.41e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 7.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 141 SQQAEVIVRQLQELRRLEEEVRLLRETSLQQKmrLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRE 220
Cdd:TIGR02168 209 AEKAERYKELKAELRELELALLVLRLEELREE--LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 221 LEEVQRLHQEQ--LSSLTQAHEEALSSLTSKAEGLEKSLSSLETRR-------AGEAKELAEAQREAELLRKQLSKTQED 291
Cdd:TIGR02168 287 QKELYALANEIsrLEQQKQILRERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 292 LEAQVTLVENLRKYVgEQVPSEVHSQTWEL-----ERQKLLETMQHLQEDRDSLHATAELL------------QVRVQSL 354
Cdd:TIGR02168 367 LEELESRLEELEEQL-ETLRSKVAQLELQIaslnnEIERLEARLERLEDRRERLQQEIEELlkkleeaelkelQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 355 THILALQEEELTRKVQPSDSLEPEFTRKCQSL------LNRWREKVFALmVQLKAQELEHSDSVKQLK-------GQVAS 421
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALdaaereLAQLQARLDSL-ERLQENLEGFSEGVKALLknqsglsGILGV 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 422 LQEKVTSQSQ-EQAI---LQRSLQ------DKAAEVEVERM-------------------GAKGLQLELSRAQEARRRWQ 472
Cdd:TIGR02168 525 LSELISVDEGyEAAIeaaLGGRLQavvvenLNAAKKAIAFLkqnelgrvtflpldsikgtEIQGNDREILKNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 473 QQTASAEEQLRLVVNAVSSSQIWLETtmakVEGAAAQLPSLNNRLSYAVRKVHTIR--------------GLIARKLALA 538
Cdd:TIGR02168 605 KDLVKFDPKLRKALSYLLGGVLVVDD----LDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaktnsSILERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 539 QLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLsARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASL 618
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQ-LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 619 GLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAevetrLREQLSDTERRLNEARREHAKAVVSLRQIQRRAA 698
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA-----LREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 157738613 699 QEKERSQELRRlQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRL 754
Cdd:TIGR02168 835 ATERRLEDLEE-QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
158-731 |
2.93e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.94 E-value: 2.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 158 EEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEaEGLRaalagAEVVRKnLEEGsqRELEEVQRLhqEQLSSLTQ 237
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE-EARK-----AEDARK-AEEA--RKAEDAKRV--EIARKAED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 238 AHEEALSSLTSKAEGLEKSLSSLETRRAGEAKEL-----AEAQREAELLRK--QLSKTQEDLEAQ-VTLVENLRKYVGEQ 309
Cdd:PTZ00121 1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAedarkAEAARKAEEERKaeEARKAEDAKKAEaVKKAEEAKKDAEEA 1242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 310 VPSEvHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSL--EPEFTRKCQSLL 387
Cdd:PTZ00121 1243 KKAE-EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAkkKAEEAKKADEAK 1321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 388 NRWRE-KVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQE 466
Cdd:PTZ00121 1322 KKAEEaKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 467 ARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQ---- 542
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKkaee 1481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 543 -----ESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAER----------------QQLSKVA 601
Cdd:PTZ00121 1482 akkadEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakkaeekkkadelkkaEELKKAE 1561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 602 QQLEQELQQTQESLASLGL-QLEVARQGQQESTEEAASLR--------QELTQQQELYGQALQEKVAEVETRLREQLSDT 672
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMALrKAEEAKKAEEARIEEVMKLYeeekkmkaEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157738613 673 E----RRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRL-----ARRLQELER 731
Cdd:PTZ00121 1642 EaeekKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeaeeAKKAEELKK 1709
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
138-734 |
4.59e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 4.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 138 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGS 217
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 218 QRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 297
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 298 LVENLRKYvGEQVPSEVHSQT------------------WELERQKLL-ETMQHLQEDRDS--LHATAELLQVRVQSLTH 356
Cdd:TIGR02168 497 LQENLEGF-SEGVKALLKNQSglsgilgvlselisvdegYEAAIEAALgGRLQAVVVENLNaaKKAIAFLKQNELGRVTF 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 357 ILALQEEEltRKVQPSDSLEPEFTRKCQSLLNRWRE------KVFALMVQL------------KAQELEHSDSVKQLKGQ 418
Cdd:TIGR02168 576 LPLDSIKG--TEIQGNDREILKNIEGFLGVAKDLVKfdpklrKALSYLLGGvlvvddldnaleLAKKLRPGYRIVTLDGD 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 419 VASLQEKVT--SQSQEQAILQRSLQDKAAEVEVERMGAKGLQL--ELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQI 494
Cdd:TIGR02168 654 LVRPGGVITggSAKTNSSILERRREIEELEEKIEELEEKIAELekALAELRKELEELEEELEQLRKELEELSRQISALRK 733
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 495 WLETTMAKVEGAAAQLPSLN-NRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQ 573
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSkELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 574 -LSARLIQQEVGRAREQGEAER-----QQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQ 647
Cdd:TIGR02168 814 lLNEEAANLRERLESLERRIAAterrlEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 648 ELYgQALQEKVAEVETR---LREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLAR 724
Cdd:TIGR02168 894 SEL-EELSEELRELESKrseLRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
650
....*....|
gi 157738613 725 RLQELERDKN 734
Cdd:TIGR02168 973 RLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
414-761 |
1.87e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 1.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 414 QLKGQVASLQEKVtsqsqEQAILQRSLQDKAAEVEVERMGAK--GLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSS 491
Cdd:COG1196 197 ELERQLEPLERQA-----EKAERYRELKEELKELEAELLLLKlrELEAELEELEAELEELEAELEELEAELAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 492 SQIWLETTMAKVEGAAAQLPSLNNRLSyavRKVHTIRGLIARKLALAQLRQEscplpppvtdVSLELQQLREERNRLDAE 571
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELA---RLEQDIARLEERRRELEERLEE----------LEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 572 LQlsarLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELyg 651
Cdd:COG1196 339 LE----ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL-- 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 652 QALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELER 731
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350
....*....|....*....|....*....|
gi 157738613 732 DKNLMLATLQQEGLLSRYKQQRLLTVLPSL 761
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
135-682 |
2.49e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 2.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 135 EGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE 214
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 215 EGSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEA 294
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 295 QVTLVENLRKYvgeqvpsevhsqtwELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDS 374
Cdd:COG1196 462 LELLAELLEEA--------------ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 375 LEPEFTRKCQSLLNRwrekvfALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGA 454
Cdd:COG1196 528 VLIGVEAAYEAALEA------ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 455 KGLQLELSRAQEARRRWQQQTASAeeqlRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARK 534
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGR----TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 535 LALAQLRQEScplpppvtdVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQES 614
Cdd:COG1196 678 EAELEELAER---------LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157738613 615 LASLGLQLEVArqgqqESTEEAASLRQELTQQQELYG----QALQEkVAEVETR---LREQLSDterrLNEARRE 682
Cdd:COG1196 749 EEEALEELPEP-----PDLEELERELERLEREIEALGpvnlLAIEE-YEELEERydfLSEQRED----LEEARET 813
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
137-475 |
3.42e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.01 E-value: 3.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 137 SQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEeg 216
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE-- 1562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 217 sQRELEEVQRLHQEQLSSLTQAH-----EEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 291
Cdd:PTZ00121 1563 -KKKAEEAKKAEEDKNMALRKAEeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 292 LEAQVTLVENLRKYVGEQVPSEVHSQTWELERQKLLETMQHLQEDRdslHATAELLQvrvqslthilalQEEELTRKVQP 371
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE---KKAAEALK------------KEAEEAKKAEE 1706
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 372 SDSLEPEFTRKCQSLLNRWREKvfalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEqaiLQRSLQDKAAEVEVER 451
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEEN------KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH---LKKEEEKKAEEIRKEK 1777
|
330 340
....*....|....*....|....
gi 157738613 452 MGAkgLQLELSRAQEARRRWQQQT 475
Cdd:PTZ00121 1778 EAV--IEEELDEEDEKRRMEVDKK 1799
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
145-692 |
2.00e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 145 EVIVRQLQELRRLEEEVRLLREtsLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEgsqrELEEV 224
Cdd:COG4913 255 EPIRELAERYAAARERLAELEY--LRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALRE----ELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 225 QRLHQ-------EQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 297
Cdd:COG4913 329 EAQIRgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 298 LVENLRKYVGEQVpSEVHSQTWELERQKL-----LETM-----QHLQEDRDSLHATAELLQVRvqslthilalQEEE--- 364
Cdd:COG4913 409 EAEAALRDLRREL-RELEAEIASLERRKSniparLLALrdalaEALGLDEAELPFVGELIEVR----------PEEErwr 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 365 -----------LTRKVQPSDslEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSvkqlkgqvASLQEKVTSQSQE- 432
Cdd:COG4913 478 gaiervlggfaLTLLVPPEH--YAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDP--------DSLAGKLDFKPHPf 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 433 QAILQRSLQDKAAEVEVE-----RMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVsssqiwlettmAKVEGAA 507
Cdd:COG4913 548 RAWLEAELGRRFDYVCVDspeelRRHPRAITRAGQVKGNGTRHEKDDRRRIRSRYVLGFDNR-----------AKLAALE 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 508 AQLPSLNNRLSYA---VRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLiQQEVG 584
Cdd:COG4913 617 AELAELEEELAEAeerLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAAL-EEQLE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 585 RAREQGEAERQQLSKVaqqleqelqqtQESLASLGLQLEVARQGQQESTE--EAASLRQELTQQQELYGQALQEKVAEVE 662
Cdd:COG4913 696 ELEAELEELEEELDEL-----------KGEIGRLEKELEQAEEELDELQDrlEAAEDLARLELRALLEERFAAALGDAVE 764
|
570 580 590
....*....|....*....|....*....|
gi 157738613 663 TRLREQLSDTERRLNEARREHAKAVVSLRQ 692
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELERAMR 794
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
147-505 |
2.89e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 147 IVRQLQELRRLEEevrLLRETSLQQKmRLEAQAmeleALARAEKAGRAEAEGLRAALAGAEVVRKNleegsqRELEEVQr 226
Cdd:TIGR02168 181 LERTRENLDRLED---ILNELERQLK-SLERQA----EKAERYKELKAELRELELALLVLRLEELR------EELEELQ- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 227 lhqEQLSSLTQAHEEalssLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKyv 306
Cdd:TIGR02168 246 ---EELKEAEEELEE----LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER-- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 307 geqvpsevhsqtwelERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFtRKCQSL 386
Cdd:TIGR02168 317 ---------------QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL-EELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 387 LNRWREKVFalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKA-----AEVEVERMGAKGLQLEL 461
Cdd:TIGR02168 381 LETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkelqAELEELEEELEELQEEL 456
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 157738613 462 SRAQEARRRWQQQTASAEEQLRLV---VNAVSSSQIWLETTMAKVEG 505
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAereLAQLQARLDSLERLQENLEG 503
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
146-755 |
3.31e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 3.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 146 VIVRQLQELRRLEEEvrllRETSLQ-QKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRknleEGSQRELEEV 224
Cdd:TIGR02169 192 IIDEKRQQLERLRRE----REKAERyQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEL----EKLTEEISEL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 225 QRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRK 304
Cdd:TIGR02169 264 EKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 305 YVGEqvpsevhsqtWELERQKLLETMQHLQEDRdslhataELLQVRVQSLTHILALQEEELTRKVQPSDSLepefTRKCQ 384
Cdd:TIGR02169 344 EIEE----------ERKRRDKLTEEYAELKEEL-------EDLRAELEEVDKEFAETRDELKDYREKLEKL----KREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 385 SLlNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRA 464
Cdd:TIGR02169 403 EL-KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 465 QEARRRWQQQTASAEEQLRLVVNAVSSS---QIWLETTMAKVEGAAAQLPS------------LNNRLSYAVRK-----V 524
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGGravEEVLKASIQGVHGTVAQLGSvgeryataievaAGNRLNNVVVEddavaK 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 525 HTIRGLIARK------LALAQLRQESCPLPPP----VTDVSLELQQLREER--------------NRLDA--ELQLSARL 578
Cdd:TIGR02169 562 EAIELLKRRKagratfLPLNKMRDERRDLSILsedgVIGFAVDLVEFDPKYepafkyvfgdtlvvEDIEAarRLMGKYRM 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 579 IQQ-----EVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYG-- 651
Cdd:TIGR02169 642 VTLegelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGei 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 652 -------QALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKE---------RSQELRRLQEEAR 715
Cdd:TIGR02169 722 ekeieqlEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEalndlearlSHSRIPEIQAELS 801
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 157738613 716 K--EEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLL 755
Cdd:TIGR02169 802 KleEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
138-730 |
3.71e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 3.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 138 QALSQQAEVIVRQLQELR--RLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKN-LE 214
Cdd:COG4913 265 AAARERLAELEYLRAALRlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEqLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 215 ---EGSQRELEEVQRLHQEQLSSLTQAHEEALSSltskAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 291
Cdd:COG4913 345 reiERLERELEERERRRARLEALLAALGLPLPAS----AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 292 LEAQVTLVENLRKyVGEQVPSEVHsqtwelERQKLLEtmQHLQEDRDSLHATAELLQVR---------VQSLTHILAL-- 360
Cdd:COG4913 421 LRELEAEIASLER-RKSNIPARLL------ALRDALA--EALGLDEAELPFVGELIEVRpeeerwrgaIERVLGGFALtl 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 361 -----QEEELTR--------------KVQPSDSLEPEFTRKCQSLLNR--WREKVFALMVQlkaQELEHS------DSVK 413
Cdd:COG4913 492 lvppeHYAAALRwvnrlhlrgrlvyeRVRTGLPDPERPRLDPDSLAGKldFKPHPFRAWLE---AELGRRfdyvcvDSPE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 414 QLK---------GQV---ASLQEK-VTSQSQEQAILQRSLQDKAAEVEVERmgaKGLQLELSRAQEARRRWQQQTASAEE 480
Cdd:COG4913 569 ELRrhpraitraGQVkgnGTRHEKdDRRRIRSRYVLGFDNRAKLAALEAEL---AELEEELAEAEERLEALEAELDALQE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 481 QLRL--VVNAVSSSQIwlettmaKVEGAAAQLPSLNNRLsyavrkvhtiRGLIARKLALAQLRQEscplpppVTDVSLEL 558
Cdd:COG4913 646 RREAlqRLAEYSWDEI-------DVASAEREIAELEAEL----------ERLDASSDDLAALEEQ-------LEELEAEL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 559 QQLREERNRLDAElqlsARLIQQEVGRAREQGEAERQQLSKVAqqleqelqqtqeSLASLGLQLEVARQGQQESTEEA-A 637
Cdd:COG4913 702 EELEEELDELKGE----IGRLEKELEQAEEELDELQDRLEAAE------------DLARLELRALLEERFAAALGDAVeR 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 638 SLRQELTQQQElygqALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRaaqekersqeLRRLQEEARKE 717
Cdd:COG4913 766 ELRENLEERID----ALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLAL----------LDRLEEDGLPE 831
|
650
....*....|...
gi 157738613 718 EGQRLARRLQELE 730
Cdd:COG4913 832 YEERFKELLNENS 844
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
139-752 |
1.67e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 139 ALSQQAEVIVRQLQELRRLEEEVRLLREtslqQKMRLEaqamELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEegsQ 218
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDARE----QIELLE----PIRELAERYAAARERLAELEYLRAALRLWFAQRR---L 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 219 RELEEVQRLHQEQLssltQAHEEALSSLTSKAEGLEKSLSSLETRRAG-EAKELAEAQREAELLRKQLSKTQEDLEAQVT 297
Cdd:COG4913 291 ELLEAELEELRAEL----ARLEAELERLEARLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEERERRRARLEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 298 LVENLrkyvGEQVPSEvhSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRkVQPSDSLEP 377
Cdd:COG4913 367 LLAAL----GLPLPAS--AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS-LERRKSNIP 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 378 EFTRKCQSLLNR---WRE---KVFALMVQLKAQELEHSDSV-KQLKGQVASLqekvtsqsqeqaILQRSLQDKAAEVeVE 450
Cdd:COG4913 440 ARLLALRDALAEalgLDEaelPFVGELIEVRPEEERWRGAIeRVLGGFALTL------------LVPPEHYAAALRW-VN 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 451 RMGAKGlQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMA------KVEgAAAQLpslnNRLSYAVrkv 524
Cdd:COG4913 507 RLHLRG-RLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGrrfdyvCVD-SPEEL----RRHPRAI--- 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 525 hTIRGLIARKLALAQLRQESCPLPPPVT--DVSLELQQLREERNRLDAELqlsarliqQEVGRAREQGEAERQQLSKVAQ 602
Cdd:COG4913 578 -TRAGQVKGNGTRHEKDDRRRIRSRYVLgfDNRAKLAALEAELAELEEEL--------AEAEERLEALEAELDALQERRE 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 603 QLEQELQQTQESLASLGLQLEVARQGQQ-ESTEEAASLRQELTQQQElygqALQEKVAEVETRLREqLSDTERRLNEARR 681
Cdd:COG4913 649 ALQRLAEYSWDEIDVASAEREIAELEAElERLDASSDDLAALEEQLE----ELEAELEELEEELDE-LKGEIGRLEKELE 723
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 157738613 682 EHAKAVVSLRQIQRRAAQEKERSQELR---RLQEEARKEEGQRLARRLQELERDKNLMLATLQQ--EGLLSRYKQQ 752
Cdd:COG4913 724 QAEEELDELQDRLEAAEDLARLELRALleeRFAAALGDAVERELRENLEERIDALRARLNRAEEelERAMRAFNRE 799
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
142-753 |
1.86e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 142 QQAEVIVRQLQ-ELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE---EGS 217
Cdd:TIGR02169 318 EDAEERLAKLEaEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYReklEKL 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 218 QRELEEVQRLHQEQLSSLTQAHEEaLSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAqvt 297
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEE-LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD--- 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 298 LVENLRKYVGEQvpSEVHSQTWELE-RQKLLETMQH--------LQEDRDSLHAT-AELLQVRVQSLTHILALQEEELTR 367
Cdd:TIGR02169 474 LKEEYDRVEKEL--SKLQRELAEAEaQARASEERVRggraveevLKASIQGVHGTvAQLGSVGERYATAIEVAAGNRLNN 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 368 KVQPSDSLepefTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKaaeV 447
Cdd:TIGR02169 552 VVVEDDAV----AKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDT---L 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 448 EVERMGAKGLQLELSR----AQEARRRWQQQTASAEEQLRLVVNAVSSSqiwlettmAKVEGAAAQLPSLNNRLSYAVRK 523
Cdd:TIGR02169 625 VVEDIEAARRLMGKYRmvtlEGELFEKSGAMTGGSRAPRGGILFSRSEP--------AELQRLRERLEGLKRELSSLQSE 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 524 VHTIRGLIARKLALAQLRQEScplpppVTDVSLELQQLREERNRLDAELQLSARLIQqEVGRAREQGEAERQQLSKVaqq 603
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRK------IGEIEKEIEQLEQEEEKLKERLEELEEDLS-SLEQEIENVKSELKELEAR--- 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 604 leqelqqtqesLASLGLQLEVARqgqqestEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREh 683
Cdd:TIGR02169 767 -----------IEELEEDLHKLE-------EALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLE- 827
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157738613 684 akavvslRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERD-KNLMLATLQQEGLLSRYKQQR 753
Cdd:TIGR02169 828 -------KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEElEELEAALRDLESRLGDLKKER 891
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
466-743 |
4.70e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 4.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 466 EARRRWQ--QQTASAEEQLRLVVNAVSSSQIWLETtmAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLA-LAQLRQ 542
Cdd:TIGR02168 197 ELERQLKslERQAEKAERYKELKAELRELELALLV--LRLEELREELEELQEELKEAEEELEELTAELQELEEkLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 543 ESCPLPPPVTDVSLELQQLREERNRLDAELQ-LSARLIQ-----QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLA 616
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQiLRERLANlerqlEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 617 SLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVET--RLREQLSDTERRLNEARREHAKAVVSLRQIQ 694
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEieRLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 157738613 695 RRAAQEK--ERSQELRRLQE-----EARKEEGQRLARRLQELERDKNLMLATLQQE 743
Cdd:TIGR02168 435 LKELQAEleELEEELEELQEelerlEEALEELREELEEAEQALDAAERELAQLQAR 490
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
135-378 |
5.06e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 5.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 135 EGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE 214
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 215 --------EGSQRELEEVQRLHQEQLSSLtQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLS 286
Cdd:TIGR02169 786 arlshsriPEIQAELSKLEEEVSRIEARL-REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 287 KTQEDLEAQVTLVENLRKYVGEqvpsevhsqtWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELT 366
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGD----------LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS 934
|
250
....*....|..
gi 157738613 367 RKVQPSDSLEPE 378
Cdd:TIGR02169 935 EIEDPKGEDEEI 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
410-717 |
5.91e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 5.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 410 DSVKQLKGQVASLQEKVtsqsqEQAILQRSLQDKAAEVEVERmgakgLQLELSRAQEARRRWQQQTASAEEQLRLVVNAV 489
Cdd:TIGR02168 193 DILNELERQLKSLERQA-----EKAERYKELKAELRELELAL-----LVLRLEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 490 SSSQIWLETTMA-------KVEGAAAQLPSLNNRLS--------YAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDV 554
Cdd:TIGR02168 263 QELEEKLEELRLevseleeEIEELQKELYALANEISrleqqkqiLRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 555 SLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQEsLASLGLQLEVARQGQQESTE 634
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE-IERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 635 EAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEA 714
Cdd:TIGR02168 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
...
gi 157738613 715 RKE 717
Cdd:TIGR02168 502 EGF 504
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
219-756 |
6.41e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 6.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 219 RELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQE--DLEAQV 296
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLlkQLRARI 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 297 TLVENLRKYVGEQVPSEVHSQTWElerqKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLE 376
Cdd:TIGR00618 270 EELRAQEAVLEETQERINRARKAA----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 377 PEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRslqdKAAEVEVERMGAKG 456
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQR----EQATIDTRTSAFRD 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 457 LQLELSRAQearrrwqqqtasAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQ-LPSLNNRLSYAVRKVHTIRGLIARKL 535
Cdd:TIGR00618 422 LQGQLAHAK------------KQQELQQRYAELCAAAITCTAQCEKLEKIHLQeSAQSLKEREQQLQTKEQIHLQETRKK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 536 AL-AQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQ--QEVGRAREQGEAERQQLSKVAQQLEQELQQTQ 612
Cdd:TIGR00618 490 AVvLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQtyAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 613 ESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVEtRLREQLSDTERRLNEAR--REHAKAVVSL 690
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR-KLQPEQDLQDVRLHLQQcsQELALKLTAL 648
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157738613 691 RQIQRRAAQEKERSQELRRLQEEARK-EEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLT 756
Cdd:TIGR00618 649 HALQLTLTQERVREHALSIRVLPKELlASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
205-752 |
9.85e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 9.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 205 GAEVVRKNLEEGS------QRELEEVQRLHQEQLSSLTQAheealssltskAEGLEKSLSSLETRRAGEAKELAEAQREA 278
Cdd:pfam15921 72 GKEHIERVLEEYShqvkdlQRRLNESNELHEKQKFYLRQS-----------VIDLQTKLQEMQMERDAMADIRRRESQSQ 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 279 ELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVpsevhsqtwELERQKLLETMQHLQEDRDslhataellqvrvqslthIL 358
Cdd:pfam15921 141 EDLRNQLQNTVHELEAAKCLKEDMLEDSNTQI---------EQLRKMMLSHEGVLQEIRS------------------IL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 359 ALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQailqr 438
Cdd:pfam15921 194 VDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDR----- 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 439 sLQDKAAEVEVERMGAKglqlelSRAQEARrrwqQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPS--LNNR 516
Cdd:pfam15921 269 -IEQLISEHEVEITGLT------EKASSAR----SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSelREAK 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 517 LSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQL----SARLIQQEVGRAREQGEA 592
Cdd:pfam15921 338 RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLekeqNKRLWDRDTGNSITIDHL 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 593 ERQQLSKVAQQLEQELQQTQESLASLGlQLE---VARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQ- 668
Cdd:pfam15921 418 RRELDDRNMEVQRLEALLKAMKSECQG-QMErqmAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSEr 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 669 -LSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLS 747
Cdd:pfam15921 497 tVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQ 576
|
....*
gi 157738613 748 RYKQQ 752
Cdd:pfam15921 577 LVGQH 581
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
151-678 |
2.72e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 151 LQELRRLEEEVRLLRETslqqkmrLEAQAMELEALARAEKAGRAEAEGLRAALAGAeVVRKNLEEGSQRELEEVQRLHQE 230
Cdd:PRK02224 250 REELETLEAEIEDLRET-------IAETEREREELAEEVRDLRERLEELEEERDDL-LAEAGLDDADAEAVEARREELED 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 231 QLSSLTQAHEE---ALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVG 307
Cdd:PRK02224 322 RDEELRDRLEEcrvAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 308 EqvpSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLThilALQEE----ELTRKVQPSDSLEPEFTRKC 383
Cdd:PRK02224 402 D---APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE---ALLEAgkcpECGQPVEGSPHVETIEEDRE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 384 QsllnrwREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRsLQDKAAEVEVERMGAKGLQlelSR 463
Cdd:PRK02224 476 R------VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEL-IAERRETIEEKRERAEELR---ER 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 464 AQEARRRWQQQTASAEEQlRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQE 543
Cdd:PRK02224 546 AAELEAEAEEKREAAAEA-EEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 544 ScplpppvtdvSLELQQLREERNRLDAELQLSArliqqeVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGlqle 623
Cdd:PRK02224 625 R----------RERLAEKRERKRELEAEFDEAR------IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIG---- 684
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157738613 624 varqGQQESTEEAASLRQELTQQQE-------LYGQA--LQEKVAEVETRLREQLSDT-ERRLNE 678
Cdd:PRK02224 685 ----AVENELEELEELRERREALENrvealeaLYDEAeeLESMYGDLRAELRQRNVETlERMLNE 745
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
243-754 |
4.69e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 4.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 243 LSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVgEQVPSEVHSQTWELE 322
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL-EELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 323 RQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHiLALQEEELTRKVQpsdslepeftrkcqsllnRWREKVFALMVQLK 402
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRE-LEEELEELEAELA------------------ELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 403 AQELEHsdsVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEvermgakGLQLELSRAQEARRRWQQQTASAEEQL 482
Cdd:COG4717 188 LATEEE---LQDLAEELEELQQRLAELEEELEEAQEELEELEEELE-------QLENELEAAALEERLKEARLLLLIAAA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 483 RLVVNAVSSSQIWLETTMAKVEGAAAQLPSLnnRLSYAVRKVHTIRGLIARKLALAQLRqescplpppvtdvSLELQQLR 562
Cdd:COG4717 258 LLALLGLGGSLLSLILTIAGVLFLVLGLLAL--LFLLLAREKASLGKEAEELQALPALE-------------ELEEEELE 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 563 EERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESL-ASLGLQLEVARQGQQESTEEAASLRQ 641
Cdd:COG4717 323 ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALlAEAGVEDEEELRAALEQAEEYQELKE 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 642 ELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEeaRKEEGQR 721
Cdd:COG4717 403 ELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAE--LLQELEE 480
|
490 500 510
....*....|....*....|....*....|....*.
gi 157738613 722 LARRLQELERD---KNLMLATLQQegLLSRYKQQRL 754
Cdd:COG4717 481 LKAELRELAEEwaaLKLALELLEE--AREEYREERL 514
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
322-678 |
7.49e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 7.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 322 ERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRkcqslLNRWREKVFALMVQL 401
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 402 KAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQ 481
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 482 LRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSyavrkvhtirgliARKLALAQLRQESCPLPPPVTDVSLELQQL 561
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALA-------------LLRSELEELSEELRELESKRSELRRELEEL 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 562 REERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASL-- 639
Cdd:TIGR02168 921 REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELke 1000
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 157738613 640 -RQELTQQQELYGQA---LQEKVAEVETRLREQLSDTERRLNE 678
Cdd:TIGR02168 1001 rYDFLTAQKEDLTEAketLEEAIEEIDREARERFKDTFDQVNE 1043
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
138-758 |
1.22e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 138 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKagRAEAEGLRAALAGAEVVRKNLEEGS 217
Cdd:pfam02463 213 YQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEE--KLAQVLKENKEEEKEKKLQEEELKL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 218 QRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 297
Cdd:pfam02463 291 LAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQ 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 298 LVENLRKYVGE--QVPSEVHSQTWELERQKLLET------MQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKV 369
Cdd:pfam02463 371 LEEELLAKKKLesERLSSAAKLKEEELELKSEEEkeaqllLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 370 QPSDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQ-------------------LKGQVASLQEKVTSQS 430
Cdd:pfam02463 451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLeersqkeskarsglkvllaLIKDGVGGRIISAHGR 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 431 QEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQL 510
Cdd:pfam02463 531 LGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDK 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 511 PSLNNRLSYAVRKV-------HTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEv 583
Cdd:pfam02463 611 ATLEADEDDKRAKVvegilkdTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESEL- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 584 grarEQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVET 663
Cdd:pfam02463 690 ----AKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEE 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 664 RLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLATLQQE 743
Cdd:pfam02463 766 KSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE 845
|
650
....*....|....*
gi 157738613 744 GLLSRYKQQRLLTVL 758
Cdd:pfam02463 846 QKLEKLAEEELERLE 860
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
132-763 |
1.50e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 132 WGLEGSQALSQQAEVIVRQLQELRRLEEEVR-LLRETSLQQKMR------------------LEAQAMELEALARAEKAG 192
Cdd:TIGR00618 243 AYLTQKREAQEEQLKKQQLLKQLRARIEELRaQEAVLEETQERInrarkaaplaahikavtqIEQQAQRIHTELQSKMRS 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 193 RAEAEGLRAALAGAE---VVRKNLEEGSQRELEEVQRLHQEQLS---SLTQAHEE-----ALSSLTSKAEGLEKSLSS-L 260
Cdd:TIGR00618 323 RAKLLMKRAAHVKQQssiEEQRRLLQTLHSQEIHIRDAHEVATSireISCQQHTLtqhihTLQQQKTTLTQKLQSLCKeL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 261 ETRRAGEAKELAEAQREAEL------LRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTWELERQKLLETMQHLQ 334
Cdd:TIGR00618 403 DILQREQATIDTRTSAFRDLqgqlahAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIH 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 335 EDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEfTRKCQSLLNRWR------EKVFALMVQLKAQELEH 408
Cdd:TIGR00618 483 LQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPL-TRRMQRGEQTYAqletseEDVYHQLTSERKQRASL 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 409 SDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEarrrwQQQTASAEEQLRLVVNA 488
Cdd:TIGR00618 562 KEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR-----KLQPEQDLQDVRLHLQQ 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 489 VSSSQIWLETTMakvEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRL 568
Cdd:TIGR00618 637 CSQELALKLTAL---HALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHI 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 569 -----------DAELQLSARLIQQEVGRAREQGEAERQQLSK---------VAQQLEQELQQTQESLASLGLQLEVARQG 628
Cdd:TIGR00618 714 eeydrefneieNASSSLGSDLAAREDALNQSLKELMHQARTVlkarteahfNNNEEVTAALQTGAELSHLAAEIQFFNRL 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 629 QQESTEEAASLRQELTQQQELYGQAL---QEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQ 705
Cdd:TIGR00618 794 REEDTHLLKTLEAEIGQEIPSDEDILnlqCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQ 873
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157738613 706 ELRRLQEEARKE---EGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLD 763
Cdd:TIGR00618 874 LSDKLNGINQIKiqfDGDALIKFLHEITLYANVRLANQSEGRFHGRYADSHVNARKYQGLA 934
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
537-754 |
2.77e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 537 LAQLRQEscplpppVTDVSLELQQLREERNRLDAELQLSARLIQ-QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESL 615
Cdd:COG3206 184 LPELRKE-------LEEAEAALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDAL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 616 ASLGLQLEVARQGQQESTeeaasLRQELTQQQELYG------QALQEKVAEVETRLREQLsdtERRLNEARREHAKAVVS 689
Cdd:COG3206 257 PELLQSPVIQQLRAQLAE-----LEAELAELSARYTpnhpdvIALRAQIAALRAQLQQEA---QRILASLEAELEALQAR 328
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157738613 690 LRQIQRRAAQEKERSQELRRLQeearkeegqrlaRRLQELERDKNLMLATLQQegLLSRYKQQRL 754
Cdd:COG3206 329 EASLQAQLAQLEARLAELPELE------------AELRRLEREVEVARELYES--LLQRLEEARL 379
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
161-312 |
3.07e-04 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 43.88 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 161 VRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEgSQRELEEVQRLHQEQLSSLTQAhE 240
Cdd:COG1566 74 ARLDPTDLQAALAQAEAQLAAAEAQLARLEAELGAEAEIAAAEAQLAAAQAQLDL-AQRELERYQALYKKGAVSQQEL-D 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 241 EALSSLTSKAEGLEKSLSSLETRRAG--EAKELAEAQREAELLRKQLSKTQEDLE-AQVT-----LVENLRKYVGEQVPS 312
Cdd:COG1566 152 EARAALDAAQAQLEAAQAQLAQAQAGlrEEEELAAAQAQVAQAEAALAQAELNLArTTIRapvdgVVTNLNVEPGEVVSA 231
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
138-296 |
3.15e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 138 QALSQQAEVIVRQLQELRRLEEE----VRLLRETSLQQKMRLEAQAMELEALARAEkagrAEAEGLRAALAGAEVVRKNL 213
Cdd:COG3096 508 QALAQRLQQLRAQLAELEQRLRQqqnaERLLEEFCQRIGQQLDAAEELEELLAELE----AQLEELEEQAAEAVEQRSEL 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 214 eegsQRELEEVQRLHQEqLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAkELAEAQREAELLRKQLSKTQEDLE 293
Cdd:COG3096 584 ----RQQLEQLRARIKE-LAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQ-QLLEREREATVERDELAARKQALE 657
|
...
gi 157738613 294 AQV 296
Cdd:COG3096 658 SQI 660
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
134-717 |
3.49e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 3.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 134 LEGSQALSQQAEVIVRQLQELrrLEEEVRLLRETSLQQKMRLEAQAMELE-ALARAEKAGRAEAEGLRAALAGAEVVRKN 212
Cdd:TIGR00618 231 LREALQQTQQSHAYLTQKREA--QEEQLKKQQLLKQLRARIEELRAQEAVlEETQERINRARKAAPLAAHIKAVTQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 213 LEEGSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDL 292
Cdd:TIGR00618 309 AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 293 EAQVTLvENLRKYVGEQVPSEVHSQTWELERQKLLE-TMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQP 371
Cdd:TIGR00618 389 TTLTQK-LQSLCKELDILQREQATIDTRTSAFRDLQgQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 372 SDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQELE--------HSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDK 443
Cdd:TIGR00618 468 LKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplcgsciHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDV 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 444 AAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLEttmaKVEGAAAQLPSLNNRLsyaVRK 523
Cdd:TIGR00618 548 YHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE----KLSEAEDMLACEQHAL---LRK 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 524 VHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREErnrldaELQLSARLIQQEVGRAREQGEAERQQLSKVAQQ 603
Cdd:TIGR00618 621 LQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR------EHALSIRVLPKELLASRQLALQKMQSEKEQLTY 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 604 LEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARRE- 682
Cdd:TIGR00618 695 WKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAAl 774
|
570 580 590
....*....|....*....|....*....|....*..
gi 157738613 683 --HAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKE 717
Cdd:TIGR00618 775 qtGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQE 811
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
237-770 |
3.50e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 3.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 237 QAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVtlveNLRKYVGEQVPSEVHS 316
Cdd:pfam12128 247 QQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDEL----NGELSAADAAVAKDRS 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 317 QTWELERQKLletmQHLQEDRDSLHATAELL-QVRVQslthiLALQEEELTRKVQPSDSLEPEFTRKCQsllnrwrekvf 395
Cdd:pfam12128 323 ELEALEDQHG----AFLDADIETAAADQEQLpSWQSE-----LENLEERLKALTGKHQDVTAKYNRRRS----------- 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 396 aLMVQLKAQELEHSDsvkqlKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLEL-SRAQEARRRWQQQ 474
Cdd:pfam12128 383 -KIKEQNNRDIAGIK-----DKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLkSRLGELKLRLNQA 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 475 TASAEE--QLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTI-RGLIARKLALAQLRQESCPLPppv 551
Cdd:pfam12128 457 TATPELllQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAsRRLEERQSALDELELQLFPQA--- 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 552 tdvslelqqlreerNRLDAELQLSARLIQQEVGRAreqgeAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQE 631
Cdd:pfam12128 534 --------------GTLLHFLRKEAPDWEQSIGKV-----ISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPE 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 632 STEEAASLRQELTQQQELYgQALQEKVAEVETRL---REQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELR 708
Cdd:pfam12128 595 WAASEEELRERLDKAEEAL-QSAREKQAAAEEQLvqaNGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKAL 673
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157738613 709 RLQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDKKKSVVS 770
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLK 735
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
153-326 |
3.71e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 153 ELRRLEEEVRLLREtslqQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQ------RELEEVQR 226
Cdd:PRK03918 215 ELPELREELEKLEK----EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleekvKELKELKE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 227 LHQE---------QLSSLTQAHEEALSSLTSKAEGLEKSLSSLET--RRAGE-AKELAEAQREAELLRKQLsKTQEDLEA 294
Cdd:PRK03918 291 KAEEyiklsefyeEYLDELREIEKRLSRLEEEINGIEERIKELEEkeERLEElKKKLKELEKRLEELEERH-ELYEEAKA 369
|
170 180 190
....*....|....*....|....*....|..
gi 157738613 295 QVTLVENLRKYVGEQVPSEVHSQTWELERQKL 326
Cdd:PRK03918 370 KKEELERLKKRLTGLTPEKLEKELEELEKAKE 401
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
138-448 |
3.92e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 138 QALSQQAEVIVRQLQELRRLEEEVRLLREtslQQKMRLEAQAMELEALA-RAEKAGRAEAEGLRAALAGAEVVRKNLEeG 216
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEIS---ELEKRLEEIEQLLEELNkKIKDLGEEEQLRVKEKIGELEAEIASLE-R 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 217 SQRELEEVQRLHQEQLSSLtqahEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLsktqEDLEAQv 296
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKL----EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL----EEVDKE- 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 297 tlvenlrkyvgeqvpsevhSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLE 376
Cdd:TIGR02169 380 -------------------FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157738613 377 PEFTrkcqsllnrwrekvfALMVQLKAQELEhsdsVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVE 448
Cdd:TIGR02169 441 EEKE---------------DKALEIKKQEWK----LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
213-741 |
4.00e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 213 LEEGSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKelaEAQREAELLRKQLSktqeDL 292
Cdd:pfam15921 250 LKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQNSMYMRQLS----DL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 293 EAQVTlveNLRKYVGEqVPSEVHSQTWELERQKLLET--MQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQ 370
Cdd:pfam15921 323 ESTVS---QLRSELRE-AKRMYEDKIEELEKQLVLANseLTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 371 PSDSLEPEFTRKCQSLLNRWRE------KVFALMVQLKAQElehSDSVKQLKGQVASLQ------EKVTSQSQEQAILQR 438
Cdd:pfam15921 399 QNKRLWDRDTGNSITIDHLRRElddrnmEVQRLEALLKAMK---SECQGQMERQMAAIQgkneslEKVSSLTAQLESTKE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 439 SLQDKAAEVEVERMGAKGLQL---ELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNN 515
Cdd:pfam15921 476 MLRKVVEELTAKKMTLESSERtvsDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKL 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 516 RLSYAVRKVHTIRGLIARKLAL--------AQLRQESCPLPPPVTDVSLELQQLREERNRLDAEL-QLSARLIQQEVG-- 584
Cdd:pfam15921 556 QMAEKDKVIEILRQQIENMTQLvgqhgrtaGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIrELEARVSDLELEkv 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 585 ----------RAREQGEAERQQLskvaqqlEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTqqqelygqaL 654
Cdd:pfam15921 636 klvnagserlRAVKDIKQERDQL-------LNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLK---------M 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 655 QEKVAEVETrlrEQLSDTERRLNEARREHAKAVVSL-RQIQRRAAQEKERSQELRRLQEEAR---------KEEGQRLAR 724
Cdd:pfam15921 700 QLKSAQSEL---EQTRNTLKSMEGSDGHAMKVAMGMqKQITAKRGQIDALQSKIQFLEEAMTnankekhflKEEKNKLSQ 776
|
570
....*....|....*..
gi 157738613 725 RLQELERDKNLMLATLQ 741
Cdd:pfam15921 777 ELSTVATEKNKMAGELE 793
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
154-482 |
5.00e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 154 LRRLEEEVrlLRETSLQQKMR-LEAQAMELEALARAEKAGRAEAEGLRAALAGA-EVVRKNLEEG-----------SQRE 220
Cdd:pfam01576 249 LARLEEET--AQKNNALKKIReLEAQISELQEDLESERAARNKAEKQRRDLGEElEALKTELEDTldttaaqqelrSKRE 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 221 ---------LEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLrkQLSKTQed 291
Cdd:pfam01576 327 qevtelkkaLEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTL--QQAKQD-- 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 292 leaqvtlVENLRKYVGEQVpSEVHSQTWELERQKlletmqhlQEDRDSLHAtaelLQVRVQSLTHILALQEEELTRKVQP 371
Cdd:pfam01576 403 -------SEHKRKKLEGQL-QELQARLSESERQR--------AELAEKLSK----LQSELESVSSLLNEAEGKNIKLSKD 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 372 SDSLEPEFtRKCQSLLNrwrekvfalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVER 451
Cdd:pfam01576 463 VSSLESQL-QDTQELLQ-----------EETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMK 530
|
330 340 350
....*....|....*....|....*....|.
gi 157738613 452 MGAKGLQLELSRAQEARRRWQQQTASAEEQL 482
Cdd:pfam01576 531 KKLEEDAGTLEALEEGKKRLQRELEALTQQL 561
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
236-776 |
5.87e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 5.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 236 TQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQlsktqedleAQVTLVENLRKyvGEQVPSEVH 315
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA---------EEARKAEDARK--AEEARKAED 1150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 316 SQTWELERQklLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEftRKCQSLLNRWREKVF 395
Cdd:PTZ00121 1151 AKRVEIARK--AEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEE--RKAEEARKAEDAKKA 1226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 396 -----ALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQL----------E 460
Cdd:PTZ00121 1227 eavkkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkkaeekkkadE 1306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 461 LSRAQEARRRWQQQTASAEEQLRLVVNAVSSSqiwlETTMAKVEGAAAQLPSLNNRLSYAVRKVHtirgliARKLALAQL 540
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKA----EEAKKAAEAAKAEAEAAADEAEAAEEKAE------AAEKKKEEA 1376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 541 RQESCPLPPPVTDV--SLELQQLREERNRLDAELQLSARLiQQEVGRAREQGEAERQ--QLSKVAQQLEQELQQTQESLA 616
Cdd:PTZ00121 1377 KKKADAAKKKAEEKkkADEAKKKAEEDKKKADELKKAAAA-KKKADEAKKKAEEKKKadEAKKKAEEAKKADEAKKKAEE 1455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 617 SLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQL---SDTERRLNEARR--EHAKAVVSLR 691
Cdd:PTZ00121 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAkkkADEAKKAEEAKKadEAKKAEEAKK 1535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 692 QIQRRAAQEKERSQELRRlQEEARKEEGQRLARRLQELERDKNLmlaTLQQEGLLSRYKQQRLLTVLPSLLDKKKSVVSS 771
Cdd:PTZ00121 1536 ADEAKKAEEKKKADELKK-AEELKKAEEKKKAEEAKKAEEDKNM---ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
....*
gi 157738613 772 PRPPE 776
Cdd:PTZ00121 1612 AKKAE 1616
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
472-704 |
6.10e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 472 QQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLA-LAQLRQEscplppp 550
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAeLAELEKE------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 551 VTDVSLELQQLREERNRLDAELQLSARLIQQEVG-RAREQGEAER--QQLSKVAQQLEQELQQTQESLAslglQLEVARQ 627
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLlSPEDFLDAVRrlQYLKYLAPARREQAEELRADLA----ELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157738613 628 GQQESTEEAASLRQELTQQQELYGQALQEKvAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERS 704
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAER-QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
129-310 |
7.65e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 7.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 129 GRSWGLEGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALaraekagRAEAEGLRaalagaev 208
Cdd:PRK00409 486 GKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEAL-------LKEAEKLK-------- 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 209 vrKNLEEgsqrELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLE--TRRAGEAKELAEAQREaelLRKQLS 286
Cdd:PRK00409 551 --EELEE----KKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQkgGYASVKAHELIEARKR---LNKANE 621
|
170 180
....*....|....*....|....
gi 157738613 287 KTQEDLEAQVTLVENLRkyVGEQV 310
Cdd:PRK00409 622 KKEKKKKKQKEKQEELK--VGDEV 643
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
547-743 |
1.06e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 547 LPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEvgrareqgEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVAR 626
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAAL--------KKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 627 QGQQESTEEAASLRQELTQQQELYGQAL-----QEKVAEVETRLR-EQLSDTERRL------NEARREHAKAVVS-LRQI 693
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELAELLralyrLGRQPPLALLLSpEDFLDAVRRLqylkylAPARREQAEELRAdLAEL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 157738613 694 QRRAAQEKERSQELRRLQEEARKEEgqrlaRRLQELERDKNLMLATLQQE 743
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEER-----AALEALKAERQKLLARLEKE 207
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
138-304 |
1.25e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 138 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARA-EKAGRAE-------AEGLRAALAGAEVV 209
Cdd:COG4942 62 RRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRAlYRLGRQPplalllsPEDFLDAVRRLQYL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 210 RKNLEEgsQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQ 289
Cdd:COG4942 142 KYLAPA--RREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
170
....*....|....*
gi 157738613 290 EDLEAQVTLVENLRK 304
Cdd:COG4942 220 QEAEELEALIARLEA 234
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
220-460 |
2.02e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 220 ELEEVQRLHQEQLSSLTQaHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQ----------LSKTQ 289
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQ-NNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEnqsykqeiknLESQI 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 290 EDLEAQVTLVENLRKYVGEQVPS-EVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSL---THILALQEEEL 365
Cdd:TIGR04523 394 NDLESKIQNQEKLNQQKDEQIKKlQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLdntRESLETQLKVL 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 366 TRKV----QPSDSLEPEFTRKCQSLLnrwrekvfalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQ 441
Cdd:TIGR04523 474 SRSInkikQNLEQKQKELKSKEKELK------------KLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKIS 541
|
250
....*....|....*....
gi 157738613 442 DKAAEVEVERMGAKGLQLE 460
Cdd:TIGR04523 542 DLEDELNKDDFELKKENLE 560
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
321-588 |
2.05e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 321 LERQKLLETMQHLQEDRDSL---HATAELLQVRVQSLTHILALQEEELTRKVQPSDslepefTRKCQSLLNRWREkvfAL 397
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLeraHEALEDAREQIELLEPIRELAERYAAARERLAE------LEYLRAALRLWFA---QR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 398 MVQLKAQELEhsdsvkQLKGQVASLQEKVTSQSQEQAILQRSLQdkaaEVEVERMGAKG-----LQLELSRAQEARRRWQ 472
Cdd:COG4913 289 RLELLEAELE------ELRAELARLEAELERLEARLDALREELD----ELEAQIRGNGGdrleqLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 473 QQTASAEEQLR-LVVNAVSSSQIWLETtmakVEGAAAQLPSLNNRLSYAVRKVHTIRGliarklALAQLRQEscplpppV 551
Cdd:COG4913 359 RRRARLEALLAaLGLPLPASAEEFAAL----RAEAAALLEALEEELEALEEALAEAEA------ALRDLRRE-------L 421
|
250 260 270
....*....|....*....|....*....|....*..
gi 157738613 552 TDVSLELQQLREERNRLDAELQLSARLIQQEVGRARE 588
Cdd:COG4913 422 RELEAEIASLERRKSNIPARLLALRDALAEALGLDEA 458
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
140-732 |
2.06e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 140 LSQQAEVIVRQLQ----ELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALagaevvrKNLEE 215
Cdd:pfam15921 368 FSQESGNLDDQLQkllaDLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL-------KAMKS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 216 GSQRELEEVQRLHQEQLSSLtqaheEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQ 295
Cdd:pfam15921 441 ECQGQMERQMAAIQGKNESL-----EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAT 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 296 VTLVENLRKYVGEQvpsevhsqtwelerqklLETMQHLQEDRDSL-HATAELLQVRVQ-----SLTHILALQEEELTRKV 369
Cdd:pfam15921 516 NAEITKLRSRVDLK-----------------LQELQHLKNEGDHLrNVQTECEALKLQmaekdKVIEILRQQIENMTQLV 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 370 ----QPSDSLEPEFTRKCQSLLNRWREkvfalMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAA 445
Cdd:pfam15921 579 gqhgRTAGAMQVEKAQLEKEINDRRLE-----LQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQ 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 446 EVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVsssQIWLETTMAKVEGAAAQLPSLNNRLSYAVR-KV 524
Cdd:pfam15921 654 ERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL---KMQLKSAQSELEQTRNTLKSMEGSDGHAMKvAM 730
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 525 HTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAqql 604
Cdd:pfam15921 731 GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVA--- 807
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 605 eqelqQTQESLASLGLQLEVARQGQQESTEEAASLR-QELTQQQELYGQALQEKvAEVETRLREQLSDTERRLNEARREH 683
Cdd:pfam15921 808 -----NMEVALDKASLQFAECQDIIQRQEQESVRLKlQHTLDVKELQGPGYTSN-SSMKPRLLQPASFTRTHSNVPSSQS 881
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 157738613 684 AKAVVSLRQIQRRAAQEkERSQELRRLQEEARKEEGQRLARRLQELERD 732
Cdd:pfam15921 882 TASFLSHHSRKTNALKE-DPTRDLKQLLQELRSVINEEPTVQLSKAEDK 929
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
203-434 |
2.10e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 203 LAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAHEEA------LSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQR 276
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEkallkqLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 277 EAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVpseVHSQTWELERQKLLETMQHLQEDRDSLhatAELLQVRVQSLTH 356
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLAL---LLSPEDFLDAVRRLQYLKYLAPARREQ---AEELRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157738613 357 ILALQEEELTRKVQPSDSLEPEftrkcQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQA 434
Cdd:COG4942 165 LRAELEAERAELEALLAELEEE-----RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
138-595 |
2.38e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 138 QALSQQAEVIVRQLQELRRLEEEVRLLRE--TSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEvvrknlee 215
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAelEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELE-------- 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 216 gsqRELEEVQRLhQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQ 295
Cdd:COG4717 153 ---ERLEELREL-EEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 296 VTLVENlrkyvgEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSL 375
Cdd:COG4717 229 LEQLEN------ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 376 EPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAK 455
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 456 GLQ--LELSRAQEARRRWQQQTASAEEQLRLVVNAV--SSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLI 531
Cdd:COG4717 383 DEEelRAALEQAEEYQELKEELEELEEQLEELLGELeeLLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157738613 532 ARKL---ALAQLRQescplpppvtdvslELQQLREERNRLdAELQLSARLIQQEVGRAREQGEAERQ 595
Cdd:COG4717 463 EQLEedgELAELLQ--------------ELEELKAELREL-AEEWAALKLALELLEEAREEYREERL 514
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
242-492 |
2.49e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 242 ALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQvpsevhsqtwel 321
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL------------ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 322 eRQKLLETMQHLQEDRDSLHATAELLQVRVQSLthILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKvfaLMVQL 401
Cdd:COG4942 82 -EAELAELEKEIAELRAELEAQKEELAELLRAL--YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE---QAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 402 KAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQ 481
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
250
....*....|.
gi 157738613 482 LRLVVNAVSSS 492
Cdd:COG4942 236 AAAAAERTPAA 246
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
145-819 |
3.34e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 145 EVIVRQLQELRRLEEEVRLLRETslQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELEEV 224
Cdd:pfam02463 160 EEAAGSRLKRKKKEALKKLIEET--ENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 225 QRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRK 304
Cdd:pfam02463 238 RIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 305 YVGEQVP----------------------SEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQE 362
Cdd:pfam02463 318 ESEKEKKkaekelkkekeeieelekelkeLEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 363 EELTRKVQPSDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQ---LKGQVASLQEKVTSQSQEQAILQRS 439
Cdd:pfam02463 398 ELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEkeeLEKQELKLLKDELELKKSEDLLKET 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 440 LQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAaqLPSLNNRLSY 519
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAI--STAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 520 AVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRA-------REQGEA 592
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAkvvegilKDTELT 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 593 ERQQLSKVAQQLEQELQQTQESLASLGL---QLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQL 669
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEvkaSLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKL 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 670 SDTERRLNEARREHAKAvVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRY 749
Cdd:pfam02463 716 KLEAEELLADRVQEAQD-KINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEE 794
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 750 KQQRLLTVLPSLLDKKKSVVSSPRPPECSASAPVAAAVPTRESIKGSLSVLLDDLQDLSEAISKEEAVCQ 819
Cdd:pfam02463 795 KLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT 864
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
139-374 |
3.38e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 139 ALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE---E 215
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEkeiA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 216 GSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLE------TRRAGEAKELAEAQREAELLRKQLSKTQ 289
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylaPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 290 EDLEAQVTLVENLRkyvgeqvpsevhsQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKV 369
Cdd:COG4942 174 AELEALLAELEEER-------------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
....*
gi 157738613 370 QPSDS 374
Cdd:COG4942 241 ERTPA 245
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
622-754 |
4.23e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.81 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 622 LEVARQGQQE---STEEAASLRQeLTQQQELYGQALqekvAEVETRLREQLSdTERRLNEARREHAKAVVSLRQIQRRAA 698
Cdd:PRK10929 119 LEKSRQAQQEqdrAREISDSLSQ-LPQQQTEARRQL----NEIERRLQTLGT-PNTPLAQAQLTALQAESAALKALVDEL 192
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 699 QEKERS----QELRRLQEEARKEEGQRLARRLQELerdKNLMLATLQQEGLLSRYKQQRL 754
Cdd:PRK10929 193 ELAQLSannrQELARLRSELAKKRSQQLDAYLQAL---RNQLNSQRQREAERALESTELL 249
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
550-753 |
4.37e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 550 PVTDVSLELQQLREERNRLDAELQ-LSARLIQQEVGRAREQGEAERQQLskvaqqleqelqqtqeslASLGLQLEVARQG 628
Cdd:COG4913 256 PIRELAERYAAARERLAELEYLRAaLRLWFAQRRLELLEAELEELRAEL------------------ARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 629 QQESTEEAASLRQELTQQQelyGQALQekvaevetRLREQLSDTERRLNEARREHAKAVVSLRQI--------------Q 694
Cdd:COG4913 318 LDALREELDELEAQIRGNG---GDRLE--------QLEREIERLERELEERERRRARLEALLAALglplpasaeefaalR 386
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 157738613 695 RRAAQEKERSQELRRLQEEARkeegQRLARRLQELERDknlmLATLQQEglLSRYKQQR 753
Cdd:COG4913 387 AEAAALLEALEEELEALEEAL----AEAEAALRDLRRE----LRELEAE--IASLERRK 435
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
618-768 |
4.67e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.46 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 618 LGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLsdterrLNEARREHAKAVVSLRQIQRRA 697
Cdd:PRK12705 17 LLGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQ------RQEARREREELQREEERLVQKE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157738613 698 AQEKERSQELrRLQEEARKEEGQRLARRLQEL-ERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDKKKSV 768
Cdd:PRK12705 91 EQLDARAEKL-DNLENQLEEREKALSARELELeELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQ 161
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
622-718 |
4.82e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 622 LEVARQGQQESTEEAASLRQELTQQQElygqALQEKVAEVETRLREQLSDTERR----LNEARREHAKAVVSLRQIQR-- 695
Cdd:PRK00409 525 LEELERELEQKAEEAEALLKEAEKLKE----ELEEKKEKLQEEEDKLLEEAEKEaqqaIKEAKKEADEIIKELRQLQKgg 600
|
90 100
....*....|....*....|....
gi 157738613 696 -RAAQEKERSQELRRLQEEARKEE 718
Cdd:PRK00409 601 yASVKAHELIEARKRLNKANEKKE 624
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
149-379 |
6.35e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 149 RQLQELRRLE-----EEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELee 223
Cdd:pfam17380 360 RELERIRQEEiameiSRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREV-- 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 224 vQRLHQEQLSSLTQAHEEALSSlTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLR 303
Cdd:pfam17380 438 -RRLEEERAREMERVRLEEQER-QQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR 515
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157738613 304 KYVgEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEE-ELTRKVQPSDSLEPEF 379
Cdd:pfam17380 516 KLL-EKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERErEMMRQIVESEKARAEY 591
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
548-671 |
8.52e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 39.93 E-value: 8.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 548 PPPvtDVSLELQQLREERNRLDAELQLSARLIQQEVGRArEQGEAERQQLSKVAQQLEQELQQTQESLASLglqlevarq 627
Cdd:PRK11448 136 PPE--DPENLLHALQQEVLTLKQQLELQAREKAQSQALA-EAQQQELVALEGLAAELEEKQQELEAQLEQL--------- 203
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 157738613 628 gQQESTEEAASLRQELTQQQELYGQALQekVAEVETRL--REQLSD 671
Cdd:PRK11448 204 -QEKAAETSQERKQKRKEITDQAAKRLE--LSEEETRIliDQQLRK 246
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
330-727 |
8.58e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 8.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 330 MQHLQEDRDSLHATAELLQVRVQSLTHILALQE--EELTRKVQPSDSLEPEFTRKCQSLlNRWREKVFALMVQLKAQElE 407
Cdd:PRK04863 275 MRHANERRVHLEEALELRRELYTSRRQLAAEQYrlVEMARELAELNEAESDLEQDYQAA-SDHLNLVQTALRQQEKIE-R 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 408 HSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQdkAAEVEVERmgakgLQLELSRAQEA-----RRRWQQQTA-----S 477
Cdd:PRK04863 353 YQADLEELEERLEEQNEVVEEADEQQEENEARAE--AAEEEVDE-----LKSQLADYQQAldvqqTRAIQYQQAvqaleR 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 478 AEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSY----------AVRKVHTIRGLIARKLALAQLRqESCPL 547
Cdd:PRK04863 426 AKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVaqaahsqfeqAYQLVRKIAGEVSRSEAWDVAR-ELLRR 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 548 PPPVTDVSLELQQLREERNRLDAELQLSARLIQ--QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVA 625
Cdd:PRK04863 505 LREQRHLAEQLQQLRMRLSELEQRLRQQQRAERllAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMAL 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157738613 626 RQGQQESTEEaaslRQELTQQQELYgQALQEKVAevetRLREQLSDTErrlnearrEHAKAVVSLRQIQrraaQEKERSQ 705
Cdd:PRK04863 585 RQQLEQLQAR----IQRLAARAPAW-LAAQDALA----RLREQSGEEF--------EDSQDVTEYMQQL----LEREREL 643
|
410 420
....*....|....*....|..
gi 157738613 706 ELRRLQEEARKEEGQRLARRLQ 727
Cdd:PRK04863 644 TVERDELAARKQALDEEIERLS 665
|
|
| |
