|
Name |
Accession |
Description |
Interval |
E-value |
| DUF3504 |
pfam12012 |
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. ... |
1531-1692 |
9.43e-88 |
|
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 156 to 173 amino acids in length.
:
Pssm-ID: 463430 Cd Length: 162 Bit Score: 282.62 E-value: 9.43e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 1531 IVTRVEEEHLWECKQLGAHSPHVLLSTLMFFNTKHFNLTTVEEHMQLSFSHIMKHWKrssqnsKVPGSRNVLLRFYPPQA 1610
Cdd:pfam12012 1 VFSRVEEEHLWECKQLGAHSPIVLLNTLVYFNTKYFNLRTVEEHRRLSFSNVVRHTK------PNPREKSTYLRYYEPPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 1611 GLDANPRKK------KVYEQQENEENPLRCPVRLYEFYLSKCPESVKTRNDVFYLQPERSCVPDSPVWYSTQALGQDALQ 1684
Cdd:pfam12012 75 QVETGGRKKrdegvnKVVEQHENSENPLRCPVKLYEFYLSKCPESVKQRKDVFYLQPEPSCVPDSPLWYSSQPLGRNTLE 154
|
....*...
gi 161078688 1685 RMLHRVKM 1692
Cdd:pfam12012 155 SMLTRILL 162
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
7-419 |
9.95e-07 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
:
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 53.87 E-value: 9.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 7 LDSFGADSNARPESATPRSEEQQDQDRQQTAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQ 86
Cdd:COG5271 246 ETLLADDDDTESAGATAEVGGTPDTDDEATDDADGLEAAEDDALDAELTAAQAADPESDDDADDSTLAALEGAAEDTEIA 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 87 SRDKAASTPADPVD--AEEPAEEPTPNEEPQGGEDEQPQTEAVRVDPQEEPEEAEEETDALQATAEEVEAAAAEADAVDG 164
Cdd:COG5271 326 TADELAAADDEDDDdsAAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADG 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 165 GPASPEAMDVDEGEVDAEGEAEQEaeDDAALDREATDDVDMQSVGADsHQAEDAEPPEGRDEVDTSLEEQENGQDPDERE 244
Cdd:COG5271 406 GTSPTSDTDEEEEEADEDASAGET--EDESTDVTSAEDDIATDEEAD-SLADEEEEAEAELDTEEDTESAEEDADGDEAT 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 245 K---DAAADEDDPDAEGDAESEQVDENAEETGEAEHGDDT-VENVLEPEESDV---------CLIPDDQETEVTEAEKEL 311
Cdd:COG5271 483 DeddASDDGDEEEAEEDAEAEADSDELTAEETSADDGADTdAAADPEDSDEDAledetegeeNAPGSDQDADETDEPEAT 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 312 ARENAEKAAEEEEAEERQAKTPDNDRKSPADAAADPEDDSAAAVDATDVSPTTPTDAQAGAKSAATGIAEADGVAAAANE 391
Cdd:COG5271 563 AEEDEPDEAEAETEDATENADADETEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPET 642
|
410 420
....*....|....*....|....*...
gi 161078688 392 EEAGGDVPDPDEPTAEESSSAGAGEPGS 419
Cdd:COG5271 643 DASEAADEDADAETEAEASADESEEEAE 670
|
|
| zf-FCS |
pfam06467 |
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ... |
724-762 |
8.23e-05 |
|
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.
:
Pssm-ID: 428958 Cd Length: 40 Bit Score: 41.20 E-value: 8.23e-05
10 20 30
....*....|....*....|....*....|....*....
gi 161078688 724 KTCSCCQKDISGGQEGflAPVGDKDQFKDFCSQSCLRRY 762
Cdd:pfam06467 4 ATCWFCKKLIKNKPTV--IVLQNDGSVGQFCSQSCLDSY 40
|
|
| TRASH |
smart00746 |
metallochaperone-like domain; |
684-721 |
2.82e-03 |
|
metallochaperone-like domain;
:
Pssm-ID: 214799 Cd Length: 39 Bit Score: 36.97 E-value: 2.82e-03
10 20 30
....*....|....*....|....*....|....*...
gi 161078688 684 CETCKQEVSSIAlGKYCVRFGFDVRQFCCAGCLNTFKK 721
Cdd:smart00746 1 CSFCGKDIYNPG-TGIMVVNDGKVYYFCSSKCLSKFKK 37
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DUF3504 |
pfam12012 |
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. ... |
1531-1692 |
9.43e-88 |
|
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 156 to 173 amino acids in length.
Pssm-ID: 463430 Cd Length: 162 Bit Score: 282.62 E-value: 9.43e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 1531 IVTRVEEEHLWECKQLGAHSPHVLLSTLMFFNTKHFNLTTVEEHMQLSFSHIMKHWKrssqnsKVPGSRNVLLRFYPPQA 1610
Cdd:pfam12012 1 VFSRVEEEHLWECKQLGAHSPIVLLNTLVYFNTKYFNLRTVEEHRRLSFSNVVRHTK------PNPREKSTYLRYYEPPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 1611 GLDANPRKK------KVYEQQENEENPLRCPVRLYEFYLSKCPESVKTRNDVFYLQPERSCVPDSPVWYSTQALGQDALQ 1684
Cdd:pfam12012 75 QVETGGRKKrdegvnKVVEQHENSENPLRCPVKLYEFYLSKCPESVKQRKDVFYLQPEPSCVPDSPLWYSSQPLGRNTLE 154
|
....*...
gi 161078688 1685 RMLHRVKM 1692
Cdd:pfam12012 155 SMLTRILL 162
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
7-419 |
9.95e-07 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 53.87 E-value: 9.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 7 LDSFGADSNARPESATPRSEEQQDQDRQQTAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQ 86
Cdd:COG5271 246 ETLLADDDDTESAGATAEVGGTPDTDDEATDDADGLEAAEDDALDAELTAAQAADPESDDDADDSTLAALEGAAEDTEIA 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 87 SRDKAASTPADPVD--AEEPAEEPTPNEEPQGGEDEQPQTEAVRVDPQEEPEEAEEETDALQATAEEVEAAAAEADAVDG 164
Cdd:COG5271 326 TADELAAADDEDDDdsAAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADG 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 165 GPASPEAMDVDEGEVDAEGEAEQEaeDDAALDREATDDVDMQSVGADsHQAEDAEPPEGRDEVDTSLEEQENGQDPDERE 244
Cdd:COG5271 406 GTSPTSDTDEEEEEADEDASAGET--EDESTDVTSAEDDIATDEEAD-SLADEEEEAEAELDTEEDTESAEEDADGDEAT 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 245 K---DAAADEDDPDAEGDAESEQVDENAEETGEAEHGDDT-VENVLEPEESDV---------CLIPDDQETEVTEAEKEL 311
Cdd:COG5271 483 DeddASDDGDEEEAEEDAEAEADSDELTAEETSADDGADTdAAADPEDSDEDAledetegeeNAPGSDQDADETDEPEAT 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 312 ARENAEKAAEEEEAEERQAKTPDNDRKSPADAAADPEDDSAAAVDATDVSPTTPTDAQAGAKSAATGIAEADGVAAAANE 391
Cdd:COG5271 563 AEEDEPDEAEAETEDATENADADETEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPET 642
|
410 420
....*....|....*....|....*...
gi 161078688 392 EEAGGDVPDPDEPTAEESSSAGAGEPGS 419
Cdd:COG5271 643 DASEAADEDADAETEAEASADESEEEAE 670
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
36-310 |
3.15e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 48.84 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 36 TAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDA---DDNQSRDKAASTPADpVDAEEPAEEPTPNE 112
Cdd:TIGR00927 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAerkGEQEGEGEIEAKEAD-HKGETEAEEVEHEG 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 113 --EPQGGEDEQP-QTEAvrvdpQEEPEEAEEETDAlQATAEEVEAAAAEADAVDGGPASPEAMDVDEGEVdaegeaeqea 189
Cdd:TIGR00927 720 etEAEGTEDEGEiETGE-----EGEEVEDEGEGEA-EGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI---------- 783
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 190 eddaaldrEATDDVDMQsvgadshqaedaeppeGRDEVDTSLEEQENGQDPDEREKDAAADEDDPDAEGDAESEQVDENA 269
Cdd:TIGR00927 784 --------QAGEDGEMK----------------GDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNA 839
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 161078688 270 EETGEAEHGDDTVENVLEPEESDvcliPDDQETEVTEAEKE 310
Cdd:TIGR00927 840 ENQGEAKQDEKGVDGGGGSDGGD----SEEEEEEEEEEEEE 876
|
|
| zf-FCS |
pfam06467 |
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ... |
724-762 |
8.23e-05 |
|
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.
Pssm-ID: 428958 Cd Length: 40 Bit Score: 41.20 E-value: 8.23e-05
10 20 30
....*....|....*....|....*....|....*....
gi 161078688 724 KTCSCCQKDISGGQEGflAPVGDKDQFKDFCSQSCLRRY 762
Cdd:pfam06467 4 ATCWFCKKLIKNKPTV--IVLQNDGSVGQFCSQSCLDSY 40
|
|
| TRASH |
smart00746 |
metallochaperone-like domain; |
726-765 |
1.28e-03 |
|
metallochaperone-like domain;
Pssm-ID: 214799 Cd Length: 39 Bit Score: 38.13 E-value: 1.28e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 161078688 726 CSCCQKDISGGQEGFLAPVGDKDqfKDFCSQSCLRRYESM 765
Cdd:smart00746 1 CSFCGKDIYNPGTGIMVVNDGKV--YYFCSSKCLSKFKKK 38
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
37-126 |
2.37e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 37 APAASETLDTPASPPAEDAAAQ-ESKPPPSKEADDDfeqisegslDADDNQSRDKAASTPADPVDAEEPAEEPTPNEEPQ 115
Cdd:PRK07764 413 AAAAPAAAAAPAPAAAPQPAPApAPAPAPPSPAGNA---------PAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA 483
|
90
....*....|.
gi 161078688 116 GGEDEQPQTEA 126
Cdd:PRK07764 484 PPAAPAPAAAP 494
|
|
| TRASH |
smart00746 |
metallochaperone-like domain; |
684-721 |
2.82e-03 |
|
metallochaperone-like domain;
Pssm-ID: 214799 Cd Length: 39 Bit Score: 36.97 E-value: 2.82e-03
10 20 30
....*....|....*....|....*....|....*...
gi 161078688 684 CETCKQEVSSIAlGKYCVRFGFDVRQFCCAGCLNTFKK 721
Cdd:smart00746 1 CSFCGKDIYNPG-TGIMVVNDGKVYYFCSSKCLSKFKK 37
|
|
| DUF4775 |
pfam16001 |
Domain of unknown function (DUF4775); This family of proteins is functionally uncharacterized. ... |
16-144 |
4.43e-03 |
|
Domain of unknown function (DUF4775); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 308 and 484 amino acids in length.
Pssm-ID: 406411 [Multi-domain] Cd Length: 456 Bit Score: 41.65 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 16 ARPESATPRSEEQQDQDrqqtAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQSRDKA---- 91
Cdd:pfam16001 188 DKPETEEPEEKEKTPEE----VAKAEEPPKTSENGAATDTPAAVPESESAMEVDEEEKLQENTPQATADAPSDDKAvpdi 263
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 161078688 92 ---------ASTPADPVDAEEPAEEPTPneEP-------QGGEDEQ----PQTEAVRVDPQEEPEEAEEETDA 144
Cdd:pfam16001 264 kveekvaavSESSEEPKETSEPAKEPTP--EPmevdsssKGSSDTAqvdtPVKEVVPAAPATESAVAAESTEA 334
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DUF3504 |
pfam12012 |
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. ... |
1531-1692 |
9.43e-88 |
|
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 156 to 173 amino acids in length.
Pssm-ID: 463430 Cd Length: 162 Bit Score: 282.62 E-value: 9.43e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 1531 IVTRVEEEHLWECKQLGAHSPHVLLSTLMFFNTKHFNLTTVEEHMQLSFSHIMKHWKrssqnsKVPGSRNVLLRFYPPQA 1610
Cdd:pfam12012 1 VFSRVEEEHLWECKQLGAHSPIVLLNTLVYFNTKYFNLRTVEEHRRLSFSNVVRHTK------PNPREKSTYLRYYEPPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 1611 GLDANPRKK------KVYEQQENEENPLRCPVRLYEFYLSKCPESVKTRNDVFYLQPERSCVPDSPVWYSTQALGQDALQ 1684
Cdd:pfam12012 75 QVETGGRKKrdegvnKVVEQHENSENPLRCPVKLYEFYLSKCPESVKQRKDVFYLQPEPSCVPDSPLWYSSQPLGRNTLE 154
|
....*...
gi 161078688 1685 RMLHRVKM 1692
Cdd:pfam12012 155 SMLTRILL 162
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
7-419 |
9.95e-07 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 53.87 E-value: 9.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 7 LDSFGADSNARPESATPRSEEQQDQDRQQTAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQ 86
Cdd:COG5271 246 ETLLADDDDTESAGATAEVGGTPDTDDEATDDADGLEAAEDDALDAELTAAQAADPESDDDADDSTLAALEGAAEDTEIA 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 87 SRDKAASTPADPVD--AEEPAEEPTPNEEPQGGEDEQPQTEAVRVDPQEEPEEAEEETDALQATAEEVEAAAAEADAVDG 164
Cdd:COG5271 326 TADELAAADDEDDDdsAAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADG 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 165 GPASPEAMDVDEGEVDAEGEAEQEaeDDAALDREATDDVDMQSVGADsHQAEDAEPPEGRDEVDTSLEEQENGQDPDERE 244
Cdd:COG5271 406 GTSPTSDTDEEEEEADEDASAGET--EDESTDVTSAEDDIATDEEAD-SLADEEEEAEAELDTEEDTESAEEDADGDEAT 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 245 K---DAAADEDDPDAEGDAESEQVDENAEETGEAEHGDDT-VENVLEPEESDV---------CLIPDDQETEVTEAEKEL 311
Cdd:COG5271 483 DeddASDDGDEEEAEEDAEAEADSDELTAEETSADDGADTdAAADPEDSDEDAledetegeeNAPGSDQDADETDEPEAT 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 312 ARENAEKAAEEEEAEERQAKTPDNDRKSPADAAADPEDDSAAAVDATDVSPTTPTDAQAGAKSAATGIAEADGVAAAANE 391
Cdd:COG5271 563 AEEDEPDEAEAETEDATENADADETEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPET 642
|
410 420
....*....|....*....|....*...
gi 161078688 392 EEAGGDVPDPDEPTAEESSSAGAGEPGS 419
Cdd:COG5271 643 DASEAADEDADAETEAEASADESEEEAE 670
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
36-310 |
3.15e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 48.84 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 36 TAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDA---DDNQSRDKAASTPADpVDAEEPAEEPTPNE 112
Cdd:TIGR00927 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAerkGEQEGEGEIEAKEAD-HKGETEAEEVEHEG 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 113 --EPQGGEDEQP-QTEAvrvdpQEEPEEAEEETDAlQATAEEVEAAAAEADAVDGGPASPEAMDVDEGEVdaegeaeqea 189
Cdd:TIGR00927 720 etEAEGTEDEGEiETGE-----EGEEVEDEGEGEA-EGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI---------- 783
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 190 eddaaldrEATDDVDMQsvgadshqaedaeppeGRDEVDTSLEEQENGQDPDEREKDAAADEDDPDAEGDAESEQVDENA 269
Cdd:TIGR00927 784 --------QAGEDGEMK----------------GDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNA 839
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 161078688 270 EETGEAEHGDDTVENVLEPEESDvcliPDDQETEVTEAEKE 310
Cdd:TIGR00927 840 ENQGEAKQDEKGVDGGGGSDGGD----SEEEEEEEEEEEEE 876
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
8-310 |
3.47e-05 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 48.86 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 8 DSFGADSNARPESATPRseeqqdqdRQQTAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQS 87
Cdd:COG5271 512 EETSADDGADTDAAADP--------EDSDEDALEDETEGEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDATENAD 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 88 RDKAASTPADPVDAEEPAEEPTPNEEPqggEDEQPQTEAvrvdpqeepeeaEEETDALQATAEEVEAAAAEADAVDGGPA 167
Cdd:COG5271 584 ADETEESADESEEAEASEDEAAEEEEA---DDDEADADA------------DGAADEEETEEEAAEDEAAEPETDASEAA 648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 168 SPEAMDVDEGEV--DAEGEAEQEAEDDAALDREATDDVDMQSVGADSHQAEDAEPPEGRDEVDTSLEEQENGQD-PDERE 244
Cdd:COG5271 649 DEDADAETEAEAsaDESEEEAEDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASEEADAEEADTEADgTAEEA 728
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 161078688 245 KDAAADEDDPDAEGDAESEQVDENAE--ETGEAEHGD-DTVENVLEPEESDVCLIPDDQETEVTEAEKE 310
Cdd:COG5271 729 EEAAEEAESADEEAASLPDEADAEEEaeEAEEAEEDDaDGLEEALEEEKADAEEAATDEEAEAAAEEKE 797
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
36-310 |
7.94e-05 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 47.70 E-value: 7.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 36 TAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDfEQISEGSLDADDNQSRDKAASTPADPvDAEEPAEEPTPNEEPQ 115
Cdd:COG5271 589 ESADESEEAEASEDEAAEEEEADDDEADADADGAAD-EEETEEEAAEDEAAEPETDASEAADE-DADAETEAEASADESE 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 116 GGEDEQPQTEAVRVDPQEEPEEAEEETD--ALQATAEEVEAAAaeadavdgGPASPEAMDVDEGEVDAEGEAEQEAEDDA 193
Cdd:COG5271 667 EEAEDESETSSEDAEEDADAAAAEASDDeeETEEADEDAETAS--------EEADAEEADTEADGTAEEAEEAAEEAESA 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 194 alDREATDDVDMQSVGADSHQAEDAEPPEGrDEVDTSLEEQENGQDPDEREKDAAADEDDPDAEGDAES-EQVDENAEET 272
Cdd:COG5271 739 --DEEAASLPDEADAEEEAEEAEEAEEDDA-DGLEEALEEEKADAEEAATDEEAEAAAEEKEKVADEDQdTDEDALLDEA 815
|
250 260 270
....*....|....*....|....*....|....*...
gi 161078688 273 GEAEHGDDTVENVLEPEESDVCLIPDDQETEVTEAEKE 310
Cdd:COG5271 816 EADEEEDLDGEDEETADEALEDIEAGIAEDDEEDDDAA 853
|
|
| zf-FCS |
pfam06467 |
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ... |
724-762 |
8.23e-05 |
|
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.
Pssm-ID: 428958 Cd Length: 40 Bit Score: 41.20 E-value: 8.23e-05
10 20 30
....*....|....*....|....*....|....*....
gi 161078688 724 KTCSCCQKDISGGQEGflAPVGDKDQFKDFCSQSCLRRY 762
Cdd:pfam06467 4 ATCWFCKKLIKNKPTV--IVLQNDGSVGQFCSQSCLDSY 40
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
8-292 |
1.96e-04 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 46.55 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 8 DSFGADSNARPESATPRSEEQQDQDRQQTAPAASETLDTP--ASPPAEDAAAQESKPPP---SKEADDDFEQISEG---- 78
Cdd:COG5271 587 TEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEetEEEAAEDEAAEPETDASeaaDEDADAETEAEASAdese 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 79 SLDADDNQSRDKAASTPADPVDAEEPAEEPTPNEEPQGGEDEQPQTEAVRVDPQeEPEEAEEETDALQATAEEVEAAAAE 158
Cdd:COG5271 667 EEAEDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASEEADAEEADTE-ADGTAEEAEEAAEEAESADEEAASL 745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 159 ADAVDGGPASPEAMDVDEGEVDaegEAEQEAEDDAALDREATDDVDMQSVGADSHQAEDAEPPEGRDEVDTSLEEQENGQ 238
Cdd:COG5271 746 PDEADAEEEAEEAEEAEEDDAD---GLEEALEEEKADAEEAATDEEAEAAAEEKEKVADEDQDTDEDALLDEAEADEEED 822
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 161078688 239 DPDEREKDAAADEDDPDAEGDAESEQVDENAEETGEAEHGDDTVENVLEPEESD 292
Cdd:COG5271 823 LDGEDEETADEALEDIEAGIAEDDEEDDDAAAAKDVDADLDLDADLAADEHEAE 876
|
|
| TRASH |
smart00746 |
metallochaperone-like domain; |
726-765 |
1.28e-03 |
|
metallochaperone-like domain;
Pssm-ID: 214799 Cd Length: 39 Bit Score: 38.13 E-value: 1.28e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 161078688 726 CSCCQKDISGGQEGFLAPVGDKDqfKDFCSQSCLRRYESM 765
Cdd:smart00746 1 CSFCGKDIYNPGTGIMVVNDGKV--YYFCSSKCLSKFKKK 38
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
37-126 |
2.37e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 37 APAASETLDTPASPPAEDAAAQ-ESKPPPSKEADDDfeqisegslDADDNQSRDKAASTPADPVDAEEPAEEPTPNEEPQ 115
Cdd:PRK07764 413 AAAAPAAAAAPAPAAAPQPAPApAPAPAPPSPAGNA---------PAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA 483
|
90
....*....|.
gi 161078688 116 GGEDEQPQTEA 126
Cdd:PRK07764 484 PPAAPAPAAAP 494
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
9-130 |
2.39e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.91 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 9 SFGADSNARPESATPRSEEQQDQDRQQTAPAAS--ETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDAddnq 86
Cdd:PRK07003 403 TGAAGAALAPKAAAAAAATRAEAPPAAPAPPATadRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAS---- 478
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 161078688 87 srDKAASTPADPVDAEEPAEEPTPNEEPQGGEDEQPQTEAVRVD 130
Cdd:PRK07003 479 --APASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRED 520
|
|
| TRASH |
smart00746 |
metallochaperone-like domain; |
684-721 |
2.82e-03 |
|
metallochaperone-like domain;
Pssm-ID: 214799 Cd Length: 39 Bit Score: 36.97 E-value: 2.82e-03
10 20 30
....*....|....*....|....*....|....*...
gi 161078688 684 CETCKQEVSSIAlGKYCVRFGFDVRQFCCAGCLNTFKK 721
Cdd:smart00746 1 CSFCGKDIYNPG-TGIMVVNDGKVYYFCSSKCLSKFKK 37
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
3-226 |
3.94e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.00 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 3 EISSLDSFGADSNARPESAT---PRSEEQQDQDRQQTAPAASETldtPASPPAEDAAAQESKPPPSKEADDDFEQISEGS 79
Cdd:PRK08691 373 ENTELQSPSAQTAEKETAAKkpqPRPEAETAQTPVQTASAAAMP---SEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGT 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 80 ldaddnqsrdkaASTPADPVDAEEPAEEPTPNEEPQGGEDEQPQTEAVRVDPQEEPEEAEEETDALQaTAEEVEAAAAEA 159
Cdd:PRK08691 450 ------------AQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVE-TETFAHEAPAEP 516
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 161078688 160 DAVDGGPASPEAMDvDEGEVDAEGEAEQEAEDDAalDREATDDVDMQSVGADShqAEDAEPPEGRDE 226
Cdd:PRK08691 517 FYGYGFPDNDCPPE-DGAEIPPPDWEHAAPADTA--GGGADEEAEAGGIGGNN--TPSAPPPEFSTE 578
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
38-116 |
4.38e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 41.49 E-value: 4.38e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 161078688 38 PAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQSRDKAASTpadpvdaEEPAEEPTPNEEPQG 116
Cdd:PHA03169 178 PEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHE-------DEPTEPEREGPPFPG 249
|
|
| DUF4775 |
pfam16001 |
Domain of unknown function (DUF4775); This family of proteins is functionally uncharacterized. ... |
16-144 |
4.43e-03 |
|
Domain of unknown function (DUF4775); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 308 and 484 amino acids in length.
Pssm-ID: 406411 [Multi-domain] Cd Length: 456 Bit Score: 41.65 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 16 ARPESATPRSEEQQDQDrqqtAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQSRDKA---- 91
Cdd:pfam16001 188 DKPETEEPEEKEKTPEE----VAKAEEPPKTSENGAATDTPAAVPESESAMEVDEEEKLQENTPQATADAPSDDKAvpdi 263
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 161078688 92 ---------ASTPADPVDAEEPAEEPTPneEP-------QGGEDEQ----PQTEAVRVDPQEEPEEAEEETDA 144
Cdd:pfam16001 264 kveekvaavSESSEEPKETSEPAKEPTP--EPmevdsssKGSSDTAqvdtPVKEVVPAAPATESAVAAESTEA 334
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
7-310 |
4.55e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 41.92 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 7 LDSFGADSNARPESATPRSEEQQDQDRQQTAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQ 86
Cdd:COG5271 212 GDSVAADDDLAAEEGASAVVEEEDASEDAVAAADETLLADDDDTESAGATAEVGGTPDTDDEATDDADGLEAAEDDALDA 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 87 SRDKA--ASTPADPVDAEEPAEEPTPNEEPQGGEDEQPQTEAVRVDPQEEPEEAEEETDAlqataeeveaaaaeADAVDG 164
Cdd:COG5271 292 ELTAAqaADPESDDDADDSTLAALEGAAEDTEIATADELAAADDEDDDDSAAEDAAEEAA--------------TAEDSA 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 165 GPASPEAMDVDEGEVDAEGEAEQEAEDDAALDREATDDVDMQSVGADSHQAEDAEPPEGRDEVDTSLEEQENGQDPDERE 244
Cdd:COG5271 358 AEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADGGTSPTSDTDEEEEEADEDASAGETEDESTDVT 437
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 161078688 245 KDAAADEddpdaeGDAESEQV-DENAEETGEAEHGDDTVENVLEPEESDvclIPDDQETEVTEAEKE 310
Cdd:COG5271 438 SAEDDIA------TDEEADSLaDEEEEAEAELDTEEDTESAEEDADGDE---ATDEDDASDDGDEEE 495
|
|
| TFIIF_alpha |
pfam05793 |
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ... |
173-278 |
5.58e-03 |
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.
Pssm-ID: 310411 [Multi-domain] Cd Length: 528 Bit Score: 41.47 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 173 DVDEGEVDAEGEAEQEAEDDAALDREATDDVDMQSVGADsHQAEDAEPPEGRD---EVDTSLEEQENGQDPDEREKDAAA 249
Cdd:pfam05793 227 ESDKGGEDGDEEKKKKKKKKLAKNKKKLDDDKKKKRGGD-DDAFEYDSDDGDDegrEEDYISDSSASGNDPEEREDKLSP 305
|
90 100
....*....|....*....|....*....
gi 161078688 250 DEDDPDAEGDAESEqvDENAEETGEAEHG 278
Cdd:pfam05793 306 EEPAKGEIEQSDDS--EESEEEKNEEEGK 332
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
37-126 |
9.03e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 40.34 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 161078688 37 APAASETLDTPASPPAEDaaaQESKPPPSKEADDDFEQISEGSLDADDNQSRDkaastPADPVDAEEPAEEPTPNEEPQG 116
Cdd:PHA03169 127 SPESPASHSPPPSPPSHP---GPHEPAPPESHNPSPNQQPSSFLQPSHEDSPE-----EPEPPTSEPEPDSPGPPQSETP 198
|
90
....*....|
gi 161078688 117 GEDEQPQTEA 126
Cdd:PHA03169 199 TSSPPPQSPP 208
|
|
| |
