DUF4392 domain-containing protein similar to Thermococcus onnurineus TON_0340; putative hydro-lyase belonging to the D-glutamate cyclase family (formerly called DUF1445); similar to Bacillus subtilis putative hydro-lyase YcsI
Domain of unknown function (DUF4392); This family of proteins is found in bacteria, archaea ...
286-557
1.68e-106
Domain of unknown function (DUF4392); This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 282 and 585 amino acids in length. There are two completely conserved G residues that may be functionally important.
:
Pssm-ID: 464140 Cd Length: 291 Bit Score: 321.15 E-value: 1.68e-106
D-glutamate cyclase; This family includes mitochondrial D-glutamate cyclase which converts ...
118-243
4.23e-59
D-glutamate cyclase; This family includes mitochondrial D-glutamate cyclase which converts D-glutamate to 5-oxo-D-proline. This family also includes numerous uncharacterized proteins from bacteria.
The actual alignment was detected with superfamily member pfam07286:
Pssm-ID: 470346 Cd Length: 143 Bit Score: 193.06 E-value: 4.23e-59
Domain of unknown function (DUF4392); This family of proteins is found in bacteria, archaea ...
286-557
1.68e-106
Domain of unknown function (DUF4392); This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 282 and 585 amino acids in length. There are two completely conserved G residues that may be functionally important.
Pssm-ID: 464140 Cd Length: 291 Bit Score: 321.15 E-value: 1.68e-106
D-glutamate cyclase; This family includes mitochondrial D-glutamate cyclase which converts ...
118-243
4.23e-59
D-glutamate cyclase; This family includes mitochondrial D-glutamate cyclase which converts D-glutamate to 5-oxo-D-proline. This family also includes numerous uncharacterized proteins from bacteria.
Pssm-ID: 462133 Cd Length: 143 Bit Score: 193.06 E-value: 4.23e-59
Domain of unknown function (DUF4392); This family of proteins is found in bacteria, archaea ...
286-557
1.68e-106
Domain of unknown function (DUF4392); This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 282 and 585 amino acids in length. There are two completely conserved G residues that may be functionally important.
Pssm-ID: 464140 Cd Length: 291 Bit Score: 321.15 E-value: 1.68e-106
D-glutamate cyclase; This family includes mitochondrial D-glutamate cyclase which converts ...
118-243
4.23e-59
D-glutamate cyclase; This family includes mitochondrial D-glutamate cyclase which converts D-glutamate to 5-oxo-D-proline. This family also includes numerous uncharacterized proteins from bacteria.
Pssm-ID: 462133 Cd Length: 143 Bit Score: 193.06 E-value: 4.23e-59
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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