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Conserved domains on  [gi|155030216|ref|NP_001093869|]
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sister chromatid cohesion protein PDS5 homolog A isoform 1 [Homo sapiens]

Protein Classification

sister chromatid cohesion protein PDS5( domain architecture ID 15331138)

sister chromatid cohesion protein PDS5 is essential for the establishment and maintenance of sister chromatid cohesion at centromere proximal and distal regions during S phase; also required for chromosomal condensation.

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
39-1109 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


:

Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1110.74  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216    39 DEMIKRLKMVVKTFMDMDQDSEDEKQqYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKDIFL 118
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKS-LDPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   119 FITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEG 198
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   199 DGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPH 278
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   279 LLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKD-SDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDL 357
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   358 AKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQ-LLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAG 436
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVSEkLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   437 -KEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSH 515
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   516 VRELLDLHKQ------PTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVlgDDEKLRSQLELLISPTCSCKQADIC 589
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   590 VREIARKLanpKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSIEGTADDEEEGVspdtairsglELLKVLSFT 669
Cdd:pfam20168  557 RKELLKRL---GDSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   670 HPTSFHSAEtyESLLQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQIRStLIPILHQKAKRGTPHQAKQAVHCIHAIFT- 748
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAGd 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   749 NKEVQLAQIFEPLSRSLNADVPEqLITPLVSLGHISMLAPDQFaSPMKSVVANFIVKDLLMNDRSTGE--KNGKLWSPDE 826
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLASPN-LLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   827 EVSPEVLAKVQAIKLLVRWLLGMKN--NQSKSANSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAGSAIMKLAQEPC 904
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   905 YHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIFALCAKDPVKERRAHARQCLLKNISIRREyik 984
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   985 qnpmatEKLLSLLPEYVVPYMIHLLAHDPDFTRSQDVDQLRDIKECLWFMLEVLMTkNENNSHAFMkkMAENIKLTRDAQ 1064
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLDLVAT-EENISLLYY--LAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 155030216  1065 SPDESktnEKLYTVCDVALCVINSKSALCN---ADSPKDPVLPMKFFT 1109
Cdd:pfam20168 1007 DPDSS---ENLYVLSDLAQLIIKRLAKQKGwslQTYPGKVKLPSDLFK 1051
 
Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
39-1109 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1110.74  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216    39 DEMIKRLKMVVKTFMDMDQDSEDEKQqYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKDIFL 118
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKS-LDPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   119 FITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEG 198
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   199 DGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPH 278
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   279 LLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKD-SDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDL 357
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   358 AKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQ-LLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAG 436
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVSEkLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   437 -KEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSH 515
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   516 VRELLDLHKQ------PTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVlgDDEKLRSQLELLISPTCSCKQADIC 589
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   590 VREIARKLanpKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSIEGTADDEEEGVspdtairsglELLKVLSFT 669
Cdd:pfam20168  557 RKELLKRL---GDSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   670 HPTSFHSAEtyESLLQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQIRStLIPILHQKAKRGTPHQAKQAVHCIHAIFT- 748
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAGd 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   749 NKEVQLAQIFEPLSRSLNADVPEqLITPLVSLGHISMLAPDQFaSPMKSVVANFIVKDLLMNDRSTGE--KNGKLWSPDE 826
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLASPN-LLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   827 EVSPEVLAKVQAIKLLVRWLLGMKN--NQSKSANSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAGSAIMKLAQEPC 904
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   905 YHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIFALCAKDPVKERRAHARQCLLKNISIRREyik 984
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   985 qnpmatEKLLSLLPEYVVPYMIHLLAHDPDFTRSQDVDQLRDIKECLWFMLEVLMTkNENNSHAFMkkMAENIKLTRDAQ 1064
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLDLVAT-EENISLLYY--LAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 155030216  1065 SPDESktnEKLYTVCDVALCVINSKSALCN---ADSPKDPVLPMKFFT 1109
Cdd:pfam20168 1007 DPDSS---ENLYVLSDLAQLIIKRLAKQKGwslQTYPGKVKLPSDLFK 1051
PDS5 cd19953
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ...
41-671 0e+00

Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.


Pssm-ID: 410996 [Multi-domain]  Cd Length: 630  Bit Score: 686.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   41 MIKRLKMVVKTFMDMDQDSEDeKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKDIFLFI 120
Cdd:cd19953     1 LLKRLKALHEELSELDQDEVD-LESLEPVAKELVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFKLF 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  121 TRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDG 200
Cdd:cd19953    79 ISQLKGLLDPDSPYFSQYFYLLESLAEVKSIVLLLDLPDADELILELFKTFFDLVRDDHPKNVENLMLDILVELIDESES 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  201 VTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLG-----RSSVSDLSEHVFDLIQELFAI 275
Cdd:cd19953   159 VPQEVLDIILAQFLKKNKSENPPAYRLAVEVCERCSDKLQRYVTQFFSEVLVDAsteedSEEDSEELEKAHELIYELWRI 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  276 DPHLLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSD-LATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNH 354
Cdd:cd19953   239 APELLLSVIPQLEEELKADDVDVRLLATKLLGKMFAEKGSAgFAQTYPSLWKEFLGRFNDKSPEVRLAWVESAKHILLNH 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  355 PDLAKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLAL-VNDQLLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHG 433
Cdd:cd19953   319 PDLAEDILEALKKRLLDPDEKVRLAAVKAICDLAYEDLLHkVPEELLSTLAERLRDKKASVRKEALQGLARLYKVAYGEI 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  434 EAGKEAA-EKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNML 512
Cdd:cd19953   399 EEGDETAiKQFGWIPSKILHLYYINDPEINLLVERVLFEYLLPLSLDDEERVKRLLLLFSSLDDKAKKAFFAILKRQQRL 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  513 RSHVRELLDLHKQP------TSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVlgDDEKLRSQLELLISPTCSCKQA 586
Cdd:cd19953   479 RKELQKYLDLCEKYnggvieDEEEVEKKLEKLIKWLSASFPDPLKAEEDLQKFAKL--NDRRIYKLLKTCLDPETDYKTV 556
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  587 DICVREIARKLANPKqpTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSiegtaddeeEGVSPDTAIRSGLELLKVL 666
Cdd:cd19953   557 RKARKELLKRLGDPS--KASLLETLKILLYRSSPLIFNKSNVPALLKILKSS---------DGSDNEKLASAALELLLEI 625

                  ....*
gi 155030216  667 SFTHP 671
Cdd:cd19953   626 SKVFP 630
 
Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
39-1109 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1110.74  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216    39 DEMIKRLKMVVKTFMDMDQDSEDEKQqYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKDIFL 118
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKS-LDPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   119 FITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEG 198
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   199 DGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPH 278
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   279 LLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKD-SDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDL 357
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   358 AKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQ-LLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAG 436
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVSEkLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   437 -KEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSH 515
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   516 VRELLDLHKQ------PTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVlgDDEKLRSQLELLISPTCSCKQADIC 589
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   590 VREIARKLanpKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSIEGTADDEEEGVspdtairsglELLKVLSFT 669
Cdd:pfam20168  557 RKELLKRL---GDSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   670 HPTSFHSAEtyESLLQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQIRStLIPILHQKAKRGTPHQAKQAVHCIHAIFT- 748
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAGd 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   749 NKEVQLAQIFEPLSRSLNADVPEqLITPLVSLGHISMLAPDQFaSPMKSVVANFIVKDLLMNDRSTGE--KNGKLWSPDE 826
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLASPN-LLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   827 EVSPEVLAKVQAIKLLVRWLLGMKN--NQSKSANSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAGSAIMKLAQEPC 904
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   905 YHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIFALCAKDPVKERRAHARQCLLKNISIRREyik 984
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   985 qnpmatEKLLSLLPEYVVPYMIHLLAHDPDFTRSQDVDQLRDIKECLWFMLEVLMTkNENNSHAFMkkMAENIKLTRDAQ 1064
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLDLVAT-EENISLLYY--LAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 155030216  1065 SPDESktnEKLYTVCDVALCVINSKSALCN---ADSPKDPVLPMKFFT 1109
Cdd:pfam20168 1007 DPDSS---ENLYVLSDLAQLIIKRLAKQKGwslQTYPGKVKLPSDLFK 1051
PDS5 cd19953
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ...
41-671 0e+00

Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.


Pssm-ID: 410996 [Multi-domain]  Cd Length: 630  Bit Score: 686.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216   41 MIKRLKMVVKTFMDMDQDSEDeKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKDIFLFI 120
Cdd:cd19953     1 LLKRLKALHEELSELDQDEVD-LESLEPVAKELVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFKLF 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  121 TRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDG 200
Cdd:cd19953    79 ISQLKGLLDPDSPYFSQYFYLLESLAEVKSIVLLLDLPDADELILELFKTFFDLVRDDHPKNVENLMLDILVELIDESES 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  201 VTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLG-----RSSVSDLSEHVFDLIQELFAI 275
Cdd:cd19953   159 VPQEVLDIILAQFLKKNKSENPPAYRLAVEVCERCSDKLQRYVTQFFSEVLVDAsteedSEEDSEELEKAHELIYELWRI 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  276 DPHLLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSD-LATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNH 354
Cdd:cd19953   239 APELLLSVIPQLEEELKADDVDVRLLATKLLGKMFAEKGSAgFAQTYPSLWKEFLGRFNDKSPEVRLAWVESAKHILLNH 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  355 PDLAKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLAL-VNDQLLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHG 433
Cdd:cd19953   319 PDLAEDILEALKKRLLDPDEKVRLAAVKAICDLAYEDLLHkVPEELLSTLAERLRDKKASVRKEALQGLARLYKVAYGEI 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  434 EAGKEAA-EKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNML 512
Cdd:cd19953   399 EEGDETAiKQFGWIPSKILHLYYINDPEINLLVERVLFEYLLPLSLDDEERVKRLLLLFSSLDDKAKKAFFAILKRQQRL 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  513 RSHVRELLDLHKQP------TSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVlgDDEKLRSQLELLISPTCSCKQA 586
Cdd:cd19953   479 RKELQKYLDLCEKYnggvieDEEEVEKKLEKLIKWLSASFPDPLKAEEDLQKFAKL--NDRRIYKLLKTCLDPETDYKTV 556
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 155030216  587 DICVREIARKLANPKqpTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSiegtaddeeEGVSPDTAIRSGLELLKVL 666
Cdd:cd19953   557 RKARKELLKRLGDPS--KASLLETLKILLYRSSPLIFNKSNVPALLKILKSS---------DGSDNEKLASAALELLLEI 625

                  ....*
gi 155030216  667 SFTHP 671
Cdd:cd19953   626 SKVFP 630
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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