NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|153792354|ref|NP_001093141|]
View 

ribosomal biogenesis factor isoform 1 [Homo sapiens]

Protein Classification

ribosomal biogenesis factor( domain architecture ID 11238868)

ribosomal biogenesis factor (RBIS) is a DUF4665 domain-containing protein that acts as a trans-acting factor in ribosome biogenesis required for efficient 40S and 60S subunit production

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4665 pfam15679
Domain of unknown function (DUF4665); This family of proteins is found in eukaryotes. Proteins ...
 1-100 8.73e-29

Domain of unknown function (DUF4665); This family of proteins is found in eukaryotes. Proteins in this family are typically between 45 and 100 amino acids in length.


:

Pssm-ID: 464797  Cd Length: 99  Bit Score: 99.40  E-value: 8.73e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792354    1 MAKNKLRGPKSRNVFHIASQKNFKAKNKAKPVTTNLKKINIMNEEKVNRVNKAFVNVQKELAHFAKSISLEPLQKELIPq 80
Cdd:pfam15679   1 MGKNKQKGKKQKNVFKVAGAKSLKAKTKAKPVTTNLKKINAVNKEKVENLNKAFVDIQKDLKSFSKKLNLEPKKKTKVV- 79

                          90       100
                  ....*....|....*....|
gi 153792354   81 QRHESKPVNVDEATRLMALL 100
Cdd:pfam15679  80 KKQPVEPVNVDQATRLMAQL 99
 
Name Accession Description Interval E-value
DUF4665 pfam15679
Domain of unknown function (DUF4665); This family of proteins is found in eukaryotes. Proteins ...
 1-100 8.73e-29

Domain of unknown function (DUF4665); This family of proteins is found in eukaryotes. Proteins in this family are typically between 45 and 100 amino acids in length.


Pssm-ID: 464797  Cd Length: 99  Bit Score: 99.40  E-value: 8.73e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792354    1 MAKNKLRGPKSRNVFHIASQKNFKAKNKAKPVTTNLKKINIMNEEKVNRVNKAFVNVQKELAHFAKSISLEPLQKELIPq 80
Cdd:pfam15679   1 MGKNKQKGKKQKNVFKVAGAKSLKAKTKAKPVTTNLKKINAVNKEKVENLNKAFVDIQKDLKSFSKKLNLEPKKKTKVV- 79

                          90       100
                  ....*....|....*....|
gi 153792354   81 QRHESKPVNVDEATRLMALL 100
Cdd:pfam15679  80 KKQPVEPVNVDQATRLMAQL 99
 
Name Accession Description Interval E-value
DUF4665 pfam15679
Domain of unknown function (DUF4665); This family of proteins is found in eukaryotes. Proteins ...
 1-100 8.73e-29

Domain of unknown function (DUF4665); This family of proteins is found in eukaryotes. Proteins in this family are typically between 45 and 100 amino acids in length.


Pssm-ID: 464797  Cd Length: 99  Bit Score: 99.40  E-value: 8.73e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792354    1 MAKNKLRGPKSRNVFHIASQKNFKAKNKAKPVTTNLKKINIMNEEKVNRVNKAFVNVQKELAHFAKSISLEPLQKELIPq 80
Cdd:pfam15679   1 MGKNKQKGKKQKNVFKVAGAKSLKAKTKAKPVTTNLKKINAVNKEKVENLNKAFVDIQKDLKSFSKKLNLEPKKKTKVV- 79

                          90       100
                  ....*....|....*....|
gi 153792354   81 QRHESKPVNVDEATRLMALL 100
Cdd:pfam15679  80 KKQPVEPVNVDQATRLMAQL 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH