|
Name |
Accession |
Description |
Interval |
E-value |
| CHGN |
pfam05679 |
Chondroitin N-acetylgalactosaminyltransferase; |
330-866 |
0e+00 |
|
Chondroitin N-acetylgalactosaminyltransferase;
Pssm-ID: 461712 [Multi-domain] Cd Length: 500 Bit Score: 755.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 330 HIGECLREMYTTHEDVEVGRCVRRFGGTQCVWSYEMQQLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHN 409
Cdd:pfam05679 1 HLDWCLKNLYSTHEDVELGRCIQKFAGIPCTWSYEGQRYFYFNYSSGKKGFIGNLKSKEFHSAITLHPVKDPADMYRLHK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 410 YMLSRKISELRYRTIQLHRESALMSKLSNSEVSKEDQQLGRTPSFNHfqPRERNEVMEWEFLTGKLLYSAAENQPpRQSI 489
Cdd:pfam05679 81 YFLSLELQKLRQEIIKLQREIKNMSELLPEGIDSLSWPLGIPPPLNR--PKSRFDVLRWDYFTETHLYSADDGQP-RRRL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 490 NSILRSALDDTVLQVMEMINENAKSRGRLIDFKEIQYGYRRVDPMHGVEYILDLLLLYKRHKGRklTVPVRRHAYLQQPF 569
Cdd:pfam05679 158 DGADKEDLDDVINTAMEEINRNYRPRGRVLEFKQLLNGYRRFDPLRGMEYILDLLLEYKKYRGR--TVPVRRRVYLQRPF 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 570 SKPFFREVEELDvnrlvesinsgtqsfsvisnslkilsslqeakdigghNEKKVHILVPLVGRYDIFLRFMENFESTCLI 649
Cdd:pfam05679 236 SKVEIIPMPYVT-------------------------------------ESTRVHIILPLSGRYETFERFLENYERVCLE 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 650 PKQNV-KLVIILFSRDAGQE--SIKHIELIQEYQSRYPSAEMMLIPMKGEFSRGLGLEMASSQFDNDTLLLFCDVDLIFR 726
Cdd:pfam05679 279 TGENVvLLLVVLYDPDEGQNdvFAEIKELIEELEKKYPKAKIPWISVKGEFSRGKALDLGAKKFPPDSLLFFCDVDMVFT 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 727 GDFLQRCRDNTVQGQQVYYPIIFSQYDPKVTHMRNPPTEGD--FVFSKETGFWRDYGYGITCIYKSDLLGAGGFDTSIQG 804
Cdd:pfam05679 359 PEFLNRCRMNTIQGKQVYFPIVFSQYDPEVVYYDKPVPTSDdnFDISKDTGHWRRYGFGIVCFYKSDYMAVGGFRTSIQG 438
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124486749 805 WGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLGSKASTFASTMQL 866
Cdd:pfam05679 439 WGLEDVDLYDKFVKSGLHVFRAVEPGLVHRYHPRHCDPRLSEKQYHMCLGSKAEGLASRTQL 500
|
|
| Fringe |
pfam02434 |
Fringe-like; The drosophila protein fringe (FNG) is a glucosaminyltransferase that controls ... |
170-400 |
1.24e-14 |
|
Fringe-like; The drosophila protein fringe (FNG) is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands. FNG is localized to the Golgi apparatus (not secreted as previously thought). Modification of Notch occurs through glycosylation by FNG. The xenopus homolog, lunatic fringe, has been implicated in a variety of functions.
Pssm-ID: 367085 Cd Length: 248 Bit Score: 74.66 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 170 GDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSsqQSPSAALgqPPPPLPVIALPGVDDSYPPQKKSFMM-IKYm 248
Cdd:pfam02434 3 LDDIFIAVKTTKKFHKTRLPLLLKTWISRAKHQTYIFT--DGEDEGL--PTRTGGHLINTNCSAGHCRKALSCKMaVEY- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 249 hDHYL-DKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQT---GLGNTEELGKLGLEPGENFCMGGPGMIFSREVL 324
Cdd:pfam02434 78 -DRFLeSGKKWFCHVDDDNYVNVPRLVRLLSCYNHTQDVYLGKPslyRPIEATERVKGNRKVGFWFATGGAGFCISRGLA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 325 RRMVPHIGEClrEMYTT------HEDVEVGRCVRRFGGTQCVWSyemqQLFHENYEHnrkgyIQDLHNSKIHAAITL--- 395
Cdd:pfam02434 157 LKMSPWASGG--RFMSTsekirlPDDCTLGYIIENLLGVPLTHS----PLFHSHLEN-----LQDLPPETLHEQVTLsyg 225
|
....*.
gi 124486749 396 -HPNKR 400
Cdd:pfam02434 226 kFWNKR 231
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
49-238 |
7.64e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 56.15 E-value: 7.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 49 GRSATGPRADAQQLLPQPQSRPrlEQSPPPASHELPGPQQPEAAPGGPSFRSSPWQQPALLPQRRRGHTPEGATALPGAP 128
Cdd:PRK07764 594 AAGGEGPPAPASSGPPEEAARP--AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 129 AAKGEPEEEDGGAADPrkGGRPGSSHNGSGDGGAAVPTSGPgdflyvgvmtAQKYLGSRALAAQRTWArfipgrveffSS 208
Cdd:PRK07764 672 KAGGAAPAAPPPAPAP--AAPAAPAGAAPAQPAPAPAATPP----------AGQADDPAAQPPQAAQG----------AS 729
|
170 180 190
....*....|....*....|....*....|
gi 124486749 209 QQSPSAALGQPPPPLPVIALPGVDDSYPPQ 238
Cdd:PRK07764 730 APSPAADDPVPLPPEPDDPPDPAGAPAQPP 759
|
|
| PBP1 |
COG5180 |
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
55-238 |
1.62e-04 |
|
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];
Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 45.44 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 55 PRADAQQLLPQPQSRPRLEQSPPPAS----HELPGPQQPE----AAPGGPSFRSSPWQQPALLPQ-----RRRGHTPEGA 121
Cdd:COG5180 266 RAAIGDTPAAEPPGLPVLEAGSEPQSdapeAETARPIDVKgvasAPPATRPVRPPGGARDPGTPRpgqptERPAGVPEAA 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 122 TALPGAPAAKGEPEEEDGGAADPRKGGRPGSSHNGSGDGGAAVPTSGPGDFLYVGVMTAQKYLGSRALAAQRTWARFIpg 201
Cdd:COG5180 346 SDAGQPPSAYPPAEEAVPGKPLEQGAPRPGSSGGDGAPFQPPNGAPQPGLGRRGAPGPPMGAGDLVQAALDGGGRETA-- 423
|
170 180 190
....*....|....*....|....*....|....*..
gi 124486749 202 rveffsSQQSPSAALGQPPPPLPViALPGVDDSYPPQ 238
Cdd:COG5180 424 ------SLGGAAGGAGQGPKADFV-PGDAESVSGPAG 453
|
|
| GT2_Chondriotin_Pol_N |
cd06420 |
N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase; Chondroitin ... |
674-836 |
3.01e-04 |
|
N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase; Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm to undergo cytokinesis and cell division. Chondroitin is synthesized as proteoglycans, sulfated and secreted to the cell surface or extracellular matrix.
Pssm-ID: 133042 [Multi-domain] Cd Length: 182 Bit Score: 42.56 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 674 ELIQEYQSRYPsaemmlIPMK-------GeF----SRGLGLEMASSQFdndtlLLFCDVDLIFRGDFLQRCRDNT----- 737
Cdd:cd06420 42 ELIEEFKSQFP------IPIKhvwqedeG-FrkakIRNKAIAAAKGDY-----LIFIDGDCIPHPDFIADHIELAepgvf 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 738 VQGQQVYYPIIFSQYDPKVTHMrnpptegdfvfsketGFWrdygygitciyKSDLLGAGGFDTSIQGWGLEDVDLYNKVI 817
Cdd:cd06420 110 LSGSRVLLNEKLTERGIRGCNM---------------SFW-----------KKDLLAVNGFDEEFTGWGGEDSELVARLL 163
|
170
....*....|....*....
gi 124486749 818 LSGLRPFRSQEVGVVhiFH 836
Cdd:cd06420 164 NSGIKFRKLKFAAIV--FH 180
|
|
| SAV_2336_NTERM |
NF041121 |
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
71-205 |
1.05e-03 |
|
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.
Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 42.68 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 71 RLEQSPPPASHELPGPQQPEAAPGGPSfrsspwqqpallpqrrrghtPEGATALPGAPAAKGEPEEEDGGAADPRKGGRP 150
Cdd:NF041121 14 QMGRAAAPPSPEGPAPTAASQPATPPP--------------------PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 124486749 151 GSSHNGSgdggaavPTSGPGDFLYVGVMTAQKYLGSRALA-AQRTWARFIPGRVEF 205
Cdd:NF041121 74 PPPPPGP-------AGAAPGAALPVRVPAPPALPNPLELArALRPLKRRVPSPRRV 122
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CHGN |
pfam05679 |
Chondroitin N-acetylgalactosaminyltransferase; |
330-866 |
0e+00 |
|
Chondroitin N-acetylgalactosaminyltransferase;
Pssm-ID: 461712 [Multi-domain] Cd Length: 500 Bit Score: 755.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 330 HIGECLREMYTTHEDVEVGRCVRRFGGTQCVWSYEMQQLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHN 409
Cdd:pfam05679 1 HLDWCLKNLYSTHEDVELGRCIQKFAGIPCTWSYEGQRYFYFNYSSGKKGFIGNLKSKEFHSAITLHPVKDPADMYRLHK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 410 YMLSRKISELRYRTIQLHRESALMSKLSNSEVSKEDQQLGRTPSFNHfqPRERNEVMEWEFLTGKLLYSAAENQPpRQSI 489
Cdd:pfam05679 81 YFLSLELQKLRQEIIKLQREIKNMSELLPEGIDSLSWPLGIPPPLNR--PKSRFDVLRWDYFTETHLYSADDGQP-RRRL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 490 NSILRSALDDTVLQVMEMINENAKSRGRLIDFKEIQYGYRRVDPMHGVEYILDLLLLYKRHKGRklTVPVRRHAYLQQPF 569
Cdd:pfam05679 158 DGADKEDLDDVINTAMEEINRNYRPRGRVLEFKQLLNGYRRFDPLRGMEYILDLLLEYKKYRGR--TVPVRRRVYLQRPF 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 570 SKPFFREVEELDvnrlvesinsgtqsfsvisnslkilsslqeakdigghNEKKVHILVPLVGRYDIFLRFMENFESTCLI 649
Cdd:pfam05679 236 SKVEIIPMPYVT-------------------------------------ESTRVHIILPLSGRYETFERFLENYERVCLE 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 650 PKQNV-KLVIILFSRDAGQE--SIKHIELIQEYQSRYPSAEMMLIPMKGEFSRGLGLEMASSQFDNDTLLLFCDVDLIFR 726
Cdd:pfam05679 279 TGENVvLLLVVLYDPDEGQNdvFAEIKELIEELEKKYPKAKIPWISVKGEFSRGKALDLGAKKFPPDSLLFFCDVDMVFT 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 727 GDFLQRCRDNTVQGQQVYYPIIFSQYDPKVTHMRNPPTEGD--FVFSKETGFWRDYGYGITCIYKSDLLGAGGFDTSIQG 804
Cdd:pfam05679 359 PEFLNRCRMNTIQGKQVYFPIVFSQYDPEVVYYDKPVPTSDdnFDISKDTGHWRRYGFGIVCFYKSDYMAVGGFRTSIQG 438
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124486749 805 WGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLGSKASTFASTMQL 866
Cdd:pfam05679 439 WGLEDVDLYDKFVKSGLHVFRAVEPGLVHRYHPRHCDPRLSEKQYHMCLGSKAEGLASRTQL 500
|
|
| Fringe |
pfam02434 |
Fringe-like; The drosophila protein fringe (FNG) is a glucosaminyltransferase that controls ... |
170-400 |
1.24e-14 |
|
Fringe-like; The drosophila protein fringe (FNG) is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands. FNG is localized to the Golgi apparatus (not secreted as previously thought). Modification of Notch occurs through glycosylation by FNG. The xenopus homolog, lunatic fringe, has been implicated in a variety of functions.
Pssm-ID: 367085 Cd Length: 248 Bit Score: 74.66 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 170 GDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSsqQSPSAALgqPPPPLPVIALPGVDDSYPPQKKSFMM-IKYm 248
Cdd:pfam02434 3 LDDIFIAVKTTKKFHKTRLPLLLKTWISRAKHQTYIFT--DGEDEGL--PTRTGGHLINTNCSAGHCRKALSCKMaVEY- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 249 hDHYL-DKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQT---GLGNTEELGKLGLEPGENFCMGGPGMIFSREVL 324
Cdd:pfam02434 78 -DRFLeSGKKWFCHVDDDNYVNVPRLVRLLSCYNHTQDVYLGKPslyRPIEATERVKGNRKVGFWFATGGAGFCISRGLA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 325 RRMVPHIGEClrEMYTT------HEDVEVGRCVRRFGGTQCVWSyemqQLFHENYEHnrkgyIQDLHNSKIHAAITL--- 395
Cdd:pfam02434 157 LKMSPWASGG--RFMSTsekirlPDDCTLGYIIENLLGVPLTHS----PLFHSHLEN-----LQDLPPETLHEQVTLsyg 225
|
....*.
gi 124486749 396 -HPNKR 400
Cdd:pfam02434 226 kFWNKR 231
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
49-238 |
7.64e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 56.15 E-value: 7.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 49 GRSATGPRADAQQLLPQPQSRPrlEQSPPPASHELPGPQQPEAAPGGPSFRSSPWQQPALLPQRRRGHTPEGATALPGAP 128
Cdd:PRK07764 594 AAGGEGPPAPASSGPPEEAARP--AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 129 AAKGEPEEEDGGAADPrkGGRPGSSHNGSGDGGAAVPTSGPgdflyvgvmtAQKYLGSRALAAQRTWArfipgrveffSS 208
Cdd:PRK07764 672 KAGGAAPAAPPPAPAP--AAPAAPAGAAPAQPAPAPAATPP----------AGQADDPAAQPPQAAQG----------AS 729
|
170 180 190
....*....|....*....|....*....|
gi 124486749 209 QQSPSAALGQPPPPLPVIALPGVDDSYPPQ 238
Cdd:PRK07764 730 APSPAADDPVPLPPEPDDPPDPAGAPAQPP 759
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
6-158 |
2.82e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 54.30 E-value: 2.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 6 RRPWVSVALGLVLGFTAASWLIAPRVAELSEKRRRGSSLCSYYGRSATGPRADAQQLLPQP-QSRPrleQSPPPA----- 79
Cdd:PRK14959 340 RRVLTSLEPAMALELLLLNLAMLPRLMPVESLRPSGGGASAPSGSAAEGPASGGAATIPTPgTQGP---QGTAPAagmtp 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 80 SHELPGPQQPEAAPGgPSFrssPWQQPALLPQRRrGHTPEGATALPGAPAAKGEPEEEDGGAADPRKGGRPGSS--HNGS 157
Cdd:PRK14959 417 SSAAPATPAPSAAPS-PRV---PWDDAPPAPPRS-GIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTaeHTPS 491
|
.
gi 124486749 158 G 158
Cdd:PRK14959 492 G 492
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
64-224 |
9.11e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.02 E-value: 9.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 64 PQPQSRPRLeqsPPPASHELPGPQQPEAAPGGPSFRSSPwQQPALLPQRRRGHTPEGATALPGAPAAKGEPEEEDGGAAD 143
Cdd:PHA03247 2551 PPPPLPPAA---PPAAPDRSVPPPRPAPRPSEPAVTSRA-RRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDP 2626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 144 PRKGGRPGSSHNGSGDGGAAVPTSGPGDFLYVGVMTAQKYLGSRALAA------QRTWARFIPGRVeffssqqSPSAALG 217
Cdd:PHA03247 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAqassppQRPRRRAARPTV-------GSLTSLA 2699
|
....*..
gi 124486749 218 QPPPPLP 224
Cdd:PHA03247 2700 DPPPPPP 2706
|
|
| Glyco_transf_7C |
pfam02709 |
N-terminal domain of galactosyltransferase; This is the N-terminal domain of a family of ... |
777-837 |
3.01e-06 |
|
N-terminal domain of galactosyltransferase; This is the N-terminal domain of a family of galactosyltransferases from a wide range of Metazoa with three related galactosyltransferases activities, all three of which are possessed by one sequence in some cases. EC:2.4.1.90, N-acetyllactosamine synthase; EC:2.4.1.38, Beta-N-acetylglucosaminyl-glycopeptide beta-1,4- galactosyltransferase; and EC:2.4.1.22 Lactose synthase. Note that N-acetyllactosamine synthase is a component of Lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin EC:2.4.1.90 is the catalyzed reaction.
Pssm-ID: 460659 [Multi-domain] Cd Length: 78 Bit Score: 45.68 E-value: 3.01e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 124486749 777 WRDYGYGITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILSGLRPFR-SQEVG-VVHIFHP 837
Cdd:pfam02709 16 YKTYFGGVLALSREDFERINGFSNGFWGWGGEDDDLYNRLLLAGLEIERpPGDIGrYYMLYHK 78
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
49-170 |
4.44e-06 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 50.55 E-value: 4.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 49 GRSATGPRADAQQLLPQPqSRPRLEQSPPPASHELPGPQQPEAAPGGPSFRSSPWQQPALLPQRRRGHTPEG------AT 122
Cdd:PHA03307 160 AAVASDAASSRQAALPLS-SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADdagassSD 238
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 124486749 123 ALPGAPAAKGEPEEEDGGAADPRKGGRPGSSHNGSGDGGAAvPTSGPG 170
Cdd:PHA03307 239 SSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPS-SRPGPA 285
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
52-145 |
5.24e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.37 E-value: 5.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 52 ATGPRADAQQLLPQPQSRPRLEQSPPPASHELPGPQQPEAAPGG-PSFRSSPWQQPALLPQRRRGHTPEGATALPGAPAA 130
Cdd:PRK07764 417 PAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAaPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAA 496
|
90
....*....|....*..
gi 124486749 131 KGEPEEEDGG--AADPR 145
Cdd:PRK07764 497 PAAPAAPAGAddAATLR 513
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
49-237 |
3.11e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.01 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 49 GRSATGPRADAQQLLPQPQSRPRLEQSP--PPASHELPGPQQPEAAPGGPSFRSSPWQQPALLPQRrrghTPEGATALPG 126
Cdd:PHA03247 2659 GRVSRPRRARRLGRAAQASSPPQRPRRRaaRPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG----PAAARQASPA 2734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 127 APAAKGEPEEEDGGAAD--PRKGGRPGSSHNGSGDGGAAVPTSGPGDFLYVgvmTAQKYLGSRALAAQRTW-----ARFI 199
Cdd:PHA03247 2735 LPAAPAPPAVPAGPATPggPARPARPPTTAGPPAPAPPAAPAAGPPRRLTR---PAVASLSESRESLPSPWdpadpPAAV 2811
|
170 180 190
....*....|....*....|....*....|....*...
gi 124486749 200 PGRVEFFSSQQSPSAALgqPPPPLPVIALPGVDDSYPP 237
Cdd:PHA03247 2812 LAPAAALPPAASPAGPL--PPPTSAQPTAPPPPPGPPP 2847
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
48-169 |
5.43e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 46.98 E-value: 5.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 48 YGRSATGPRAdaqqLLPqPQSRPRLEQSPPPAshelPGPQQPEAAPGGPSFRSSPWQQPALLPQRrrghTPEGATALPGA 127
Cdd:PHA03378 674 YQPSPTGANT----MLP-IQWAPGTMQPPPRA----PTPMRPPAAPPGRAQRPAAATGRARPPAA----APGRARPPAAA 740
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 124486749 128 PAAKGEPEEEDGGAADPRkgGRPGSSHNGSGDGGAAVPTSGP 169
Cdd:PHA03378 741 PGRARPPAAAPGRARPPA--AAPGRARPPAAAPGAPTPQPPP 780
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
19-171 |
6.75e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.52 E-value: 6.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 19 GFTAASWLIAPRVAELSEKRRRGSSLCSYYGRSATGPRADAQQLL---PQPQSRPRLEQSPPPASHELPGPQQPEAAPGG 95
Cdd:PRK07764 635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAappPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQA 714
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124486749 96 PSfrssPWQQPALLPQRRRGHTPEGATALPGAPaakgEPEEEDGGAADPRKGGRPGSSHNGSGDGGAAVPTSGPGD 171
Cdd:PRK07764 715 DD----PAAQPPQAAQGASAPSPAADDPVPLPP----EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
27-164 |
8.21e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.52 E-value: 8.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 27 IAPRVAELsEKRRRGSSLCSYYGRSATGPR-ADAQQLLPQPQSRPRLEQSPPPASHELPGPQ-QPEAAPGGPSFRSSPWQ 104
Cdd:PRK07764 374 LLARLERL-ERRLGVAGGAGAPAAAAPSAAaAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPApAPAPAPPSPAGNAPAGG 452
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 105 QPALLPQRRRGHTPEGATALPGAPAAKGEPEEEDGGAADPRKGGRPGSSHNGSGDGGAAV 164
Cdd:PRK07764 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
29-227 |
9.01e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.32 E-value: 9.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 29 PRVAELSEKRRRGSSLCSYYGRSATGPRADAQQLLPQPQSRPRLEQSPPPASHELPGPqQPEAAPGGPSFRSSPwqqpal 108
Cdd:PHA03307 225 GRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRP-GPASSSSSPRERSPS------ 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 109 lPQRRRGHTPEGATALPGAPAAKGEPEEEDGGAADPRKGGRPGSSHNGSGDGGAAVPTSGPGDFlyVGVMTAQKYLGSRA 188
Cdd:PHA03307 298 -PSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPA--DPSSPRKRPRPSRA 374
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 124486749 189 LAAQRTWARFIPGR------VEFFSSQQSPSAALGQPPPPLPVIA 227
Cdd:PHA03307 375 PSSPAASAGRPTRRraraavAGRARRRDATGRFPAGRPRPSPLDA 419
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
38-147 |
1.34e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.08 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 38 RRRGSSLcSYYGRSATGPRADAQQLL-PQPQSRPRLEQSPPPASHELPGPQQPEAAPGGPSFRSSPWQQPALLPQRRrgh 116
Cdd:PHA03247 2863 RRRPPSR-SPAAKPAAPARPPVRRLArPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR--- 2938
|
90 100 110
....*....|....*....|....*....|.
gi 124486749 117 tPEGATALPGAPAAKGEPEeedGGAADPRKG 147
Cdd:PHA03247 2939 -PQPPLAPTTDPAGAGEPS---GAVPQPWLG 2965
|
|
| PBP1 |
COG5180 |
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
55-238 |
1.62e-04 |
|
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];
Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 45.44 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 55 PRADAQQLLPQPQSRPRLEQSPPPAS----HELPGPQQPE----AAPGGPSFRSSPWQQPALLPQ-----RRRGHTPEGA 121
Cdd:COG5180 266 RAAIGDTPAAEPPGLPVLEAGSEPQSdapeAETARPIDVKgvasAPPATRPVRPPGGARDPGTPRpgqptERPAGVPEAA 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 122 TALPGAPAAKGEPEEEDGGAADPRKGGRPGSSHNGSGDGGAAVPTSGPGDFLYVGVMTAQKYLGSRALAAQRTWARFIpg 201
Cdd:COG5180 346 SDAGQPPSAYPPAEEAVPGKPLEQGAPRPGSSGGDGAPFQPPNGAPQPGLGRRGAPGPPMGAGDLVQAALDGGGRETA-- 423
|
170 180 190
....*....|....*....|....*....|....*..
gi 124486749 202 rveffsSQQSPSAALGQPPPPLPViALPGVDDSYPPQ 238
Cdd:COG5180 424 ------SLGGAAGGAGQGPKADFV-PGDAESVSGPAG 453
|
|
| GT2_Chondriotin_Pol_N |
cd06420 |
N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase; Chondroitin ... |
674-836 |
3.01e-04 |
|
N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase; Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm to undergo cytokinesis and cell division. Chondroitin is synthesized as proteoglycans, sulfated and secreted to the cell surface or extracellular matrix.
Pssm-ID: 133042 [Multi-domain] Cd Length: 182 Bit Score: 42.56 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 674 ELIQEYQSRYPsaemmlIPMK-------GeF----SRGLGLEMASSQFdndtlLLFCDVDLIFRGDFLQRCRDNT----- 737
Cdd:cd06420 42 ELIEEFKSQFP------IPIKhvwqedeG-FrkakIRNKAIAAAKGDY-----LIFIDGDCIPHPDFIADHIELAepgvf 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 738 VQGQQVYYPIIFSQYDPKVTHMrnpptegdfvfsketGFWrdygygitciyKSDLLGAGGFDTSIQGWGLEDVDLYNKVI 817
Cdd:cd06420 110 LSGSRVLLNEKLTERGIRGCNM---------------SFW-----------KKDLLAVNGFDEEFTGWGGEDSELVARLL 163
|
170
....*....|....*....
gi 124486749 818 LSGLRPFRSQEVGVVhiFH 836
Cdd:cd06420 164 NSGIKFRKLKFAAIV--FH 180
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
64-213 |
6.75e-04 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 43.18 E-value: 6.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 64 PQPQSRPRLEQSPPPASHELPGPQ---QPEAAPgGPSFRSSPWQQPALLPQRRRGHTPEGATALPGAPAAKgePEEEDGG 140
Cdd:PHA03269 54 PDPAVAPTSAASRKPDLAQAPTPAaseKFDPAP-APHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAH--EAPADAG 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 141 AADPRKGGRPgsshngsgdggAAVPTSGPGDFLYVGVM--TAQKYLGSRALAAQRT-----WARFIPGRVEFFSSQQSPS 213
Cdd:PHA03269 131 TSAASKKPDP-----------AAHTQHSPPPFAYTRSMehIACTHGGIQFIPYFHKfilpcYLQIFTGQGAAFKQHELPK 199
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
55-237 |
8.18e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 43.30 E-value: 8.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 55 PRADAQQLLPQPQSRPRLEQSPPPASHElPGPQQPEAAPGGPSFRSSPWQQPALLPQ-RRRGHTPEGAT-----ALPGAP 128
Cdd:PRK07003 459 ADSRCDERDAQPPADSGSASAPASDAPP-DAAFEPAPRAAAPSAATPAAVPDARAPAaASREDAPAAAAppapeARPPTP 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 129 AAkGEPEEEDGGAADP----RKGGRPGSSHNGSGDGGAAVPTSGPGdflyvgvmTAQKYLGSR-ALAAQRTWARFIPGRV 203
Cdd:PRK07003 538 AA-AAPAARAGGAAAAldvlRNAGMRVSSDRGARAAAAAKPAAAPA--------AAPKPAAPRvAVQVPTPRARAATGDA 608
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 124486749 204 EFFSSQQSPSAA-LGQPPPP---------LPVIA---LPGVDDSYPP 237
Cdd:PRK07003 609 PPNGAARAEQAAeSRGAPPPwedippddyVPLSAdegFGGPDDGFVP 655
|
|
| SAV_2336_NTERM |
NF041121 |
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
71-205 |
1.05e-03 |
|
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.
Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 42.68 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 71 RLEQSPPPASHELPGPQQPEAAPGGPSfrsspwqqpallpqrrrghtPEGATALPGAPAAKGEPEEEDGGAADPRKGGRP 150
Cdd:NF041121 14 QMGRAAAPPSPEGPAPTAASQPATPPP--------------------PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 124486749 151 GSSHNGSgdggaavPTSGPGDFLYVGVMTAQKYLGSRALA-AQRTWARFIPGRVEF 205
Cdd:NF041121 74 PPPPPGP-------AGAAPGAALPVRVPAPPALPNPLELArALRPLKRRVPSPRRV 122
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
49-237 |
1.65e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.17 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 49 GRSATGPRADAQQLLPQPQSRPRLEQSPPPASHELPGPQQPEAAPGGPSFRSSPWQ-QPALLP----QRRRGHTPEGATA 123
Cdd:PRK12323 370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEAlaaaRQASARGPGGAPA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 124 LPGAPA---AKGEPEEEDGGAADPRKGGRPGSSHNGSGDGGAAVPTSGPGDFLYVGVMTAQKYLGSRALAAQRTWARFIP 200
Cdd:PRK12323 450 PAPAPAaapAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDP 529
|
170 180 190
....*....|....*....|....*....|....*..
gi 124486749 201 GRVEFFSSQQSPSAALGQPPPPLPVIALPGVDDSYPP 237
Cdd:PRK12323 530 ATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
28-171 |
3.12e-03 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 41.35 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 28 APRVAELSEKRRRGSSLCSYYGRSATGPRADAQQLLPQ--------PQSRPRLEQSPPPASHELPGPQQPEAA------- 92
Cdd:PRK14086 101 HARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQlptarpayPAYQQRPEPGAWPRAADDYGWQQQRLGfpprapy 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 93 --PGGPSFRSSPWQQPALL------PQRRRGHTPEGATALPG---------APAAKGEPEEEDGGAADPRKGGRPGSSHN 155
Cdd:PRK14086 181 asPASYAPEQERDREPYDAgrpeydQRRRDYDHPRPDWDRPRrdrtdrpepPPGAGHVHRGGPGPPERDDAPVVPIRPSA 260
|
170
....*....|....*.
gi 124486749 156 GSGDGGAAVPTSGPGD 171
Cdd:PRK14086 261 PGPLAAQPAPAPGPGE 276
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
65-241 |
3.56e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.31 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 65 QPQSRPRLEQSPPPASHELPGPQQPEAAPGGPSfrssPWQQPALLPQRRRGhTPEGATALPGAPAAKGEPEEEDGGAADP 144
Cdd:PHA03307 60 AACDRFEPPTGPPPGPGTEAPANESRSTPTWSL----STLAPASPAREGSP-TPPGPSSPDPPPPTPPPASPPPSPAPDL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 145 RKGGRPGSSHNGSGDGGAAVPTSGPGDflyvgVMTAQKYLGSRALAAqrtwarfipgrveffSSQQSPSAALGQPPPPLP 224
Cdd:PHA03307 135 SEMLRPVGSPGPPPAASPPAAGASPAA-----VASDAASSRQAALPL---------------SSPEETARAPSSPPAEPP 194
|
170
....*....|....*..
gi 124486749 225 VIALPGVDDSYPPQKKS 241
Cdd:PHA03307 195 PSTPPAAASPRPPRRSS 211
|
|
| GINS_A_psf1 |
cd11710 |
Alpha-helical domain of GINS complex protein Psf1; Psf1 is a component of the GINS tetrameric ... |
364-441 |
7.11e-03 |
|
Alpha-helical domain of GINS complex protein Psf1; Psf1 is a component of the GINS tetrameric protein complex. Psf1 is mainly expressed in highly proliferative tissues, such as blastocysts, adult bone marrow, and testis, in which the stem cell system is active. Loss of Psf1 causes embryonic lethality. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3.
Pssm-ID: 212548 Cd Length: 129 Bit Score: 37.62 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 364 EMQQLFHENYEHNRKGYIQDLHNS-----KIHAAITLHpNKRP--AYQY-RLhnymlsRKISELRYRTIQlHRESALMSK 435
Cdd:cd11710 33 EIRDLYEENQALLEEAQEEEEDPGlipglLVRHLSILR-NKRCllAYLYeRL------DRIRELRWENGS-VLPEDIKEN 104
|
....*.
gi 124486749 436 LSNSEV 441
Cdd:cd11710 105 LSPAEK 110
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
49-170 |
8.50e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 39.97 E-value: 8.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486749 49 GRSATGPRADAQQLlpqpqsrPRLE-------------QSPPPASHELPGPQQPEAAPGGPS---FRSSPWQQPALLPQR 112
Cdd:PRK07764 365 PSASDDERGLLARL-------ERLErrlgvaggagapaAAAPSAAAAAPAAAPAPAAAAPAAaaaPAPAAAPQPAPAPAP 437
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 124486749 113 RRGHTPEGATALPG-----APAAKGEPEEEDGGAADPRKGGRPGSSHNGSGDGGAAVPTSGPG 170
Cdd:PRK07764 438 APAPPSPAGNAPAGgapspPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP 500
|
|
|