NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|284447294|ref|NP_001071178|]
View 

protein FAM110C [Homo sapiens]

Protein Classification

PHA03247 and FAM110_C domain-containing protein( domain architecture ID 10624447)

PHA03247 and FAM110_C domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FAM110_C pfam14160
Centrosome-associated C terminus; This is the C-terminus of a family of proteins that ...
 194-303 1.86e-51

Centrosome-associated C terminus; This is the C-terminus of a family of proteins that colocalize with the centrosome/microtubule organization centre in interphase and at the spindle poles in mitosis.


:

Pssm-ID: 464094  Cd Length: 113  Bit Score: 165.66  E-value: 1.86e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284447294  194 RRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFT-AGSDCVTLKVRSVSVATSGSGFSRHSGG--DDEG 270
Cdd:pfam14160   1 RPSLHRSKSDLSSRYSLALSELERFFNYCGLDPEVVEPLGRENFTsAGASSDSSRFRSVSGSSSESGFSRRSGDssDGTG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 284447294  271 LQEEELIEQVPSTTSVIERNARIIKWLYTCKKA 303
Cdd:pfam14160  81 LDEEELAERVPSGVSVIERNARVIKWLYGCKKA 113
 
Name Accession Description Interval E-value
FAM110_C pfam14160
Centrosome-associated C terminus; This is the C-terminus of a family of proteins that ...
 194-303 1.86e-51

Centrosome-associated C terminus; This is the C-terminus of a family of proteins that colocalize with the centrosome/microtubule organization centre in interphase and at the spindle poles in mitosis.


Pssm-ID: 464094  Cd Length: 113  Bit Score: 165.66  E-value: 1.86e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284447294  194 RRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFT-AGSDCVTLKVRSVSVATSGSGFSRHSGG--DDEG 270
Cdd:pfam14160   1 RPSLHRSKSDLSSRYSLALSELERFFNYCGLDPEVVEPLGRENFTsAGASSDSSRFRSVSGSSSESGFSRRSGDssDGTG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 284447294  271 LQEEELIEQVPSTTSVIERNARIIKWLYTCKKA 303
Cdd:pfam14160  81 LDEEELAERVPSGVSVIERNARVIKWLYGCKKA 113
 
Name Accession Description Interval E-value
FAM110_C pfam14160
Centrosome-associated C terminus; This is the C-terminus of a family of proteins that ...
 194-303 1.86e-51

Centrosome-associated C terminus; This is the C-terminus of a family of proteins that colocalize with the centrosome/microtubule organization centre in interphase and at the spindle poles in mitosis.


Pssm-ID: 464094  Cd Length: 113  Bit Score: 165.66  E-value: 1.86e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284447294  194 RRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFT-AGSDCVTLKVRSVSVATSGSGFSRHSGG--DDEG 270
Cdd:pfam14160   1 RPSLHRSKSDLSSRYSLALSELERFFNYCGLDPEVVEPLGRENFTsAGASSDSSRFRSVSGSSSESGFSRRSGDssDGTG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 284447294  271 LQEEELIEQVPSTTSVIERNARIIKWLYTCKKA 303
Cdd:pfam14160  81 LDEEELAERVPSGVSVIERNARVIKWLYGCKKA 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH