NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|110224479|ref|NP_001035931|]
View 

prosaposin isoform c preproprotein [Homo sapiens]

Protein Classification

SapB and SapA domain-containing protein( domain architecture ID 12191173)

protein containing domains SAPA, and SapB

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
317-390 3.72e-20

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


:

Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 84.47  E-value: 3.72e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110224479   317 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 390
Cdd:smart00741   3 CELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
410-484 9.30e-18

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


:

Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 77.92  E-value: 9.30e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110224479   410 FCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 484
Cdd:smart00741   2 LCELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
61-138 9.67e-18

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


:

Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 77.53  E-value: 9.67e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 110224479    61 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPnMSASCKEIVDSYLPVILDIIKGEMSrPGEVCSALNLC 138
Cdd:smart00741   1 LLCELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKS-LSDQCKEFVDQYGPEIIDLLEQGLD-PKDVCQKLGLC 76
SapA pfam02199
Saposin A-type domain;
494-526 4.87e-16

Saposin A-type domain;


:

Pssm-ID: 460487  Cd Length: 33  Bit Score: 71.46  E-value: 4.87e-16
                          10        20        30
                  ....*....|....*....|....*....|...
gi 110224479  494 TEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN 526
Cdd:pfam02199   1 PDECTWGPSYWCQDLETAKECGAVEHCQQHVWN 33
SAPA smart00162
Saposin/surfactant protein-B A-type DOMAIN; Present as four and three degenerate copies, ...
21-54 1.33e-15

Saposin/surfactant protein-B A-type DOMAIN; Present as four and three degenerate copies, respectively, in prosaposin and surfactant protein B. Single copies in acid sphingomyelinase, NK-lysin amoebapores and granulysin. Putative phospholipid membrane binding domains.


:

Pssm-ID: 128465  Cd Length: 34  Bit Score: 70.24  E-value: 1.33e-15
                           10        20        30
                   ....*....|....*....|....*....|....
gi 110224479    21 GLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWN 54
Cdd:smart00162   1 GPKRCTWGPSVWCQNLETASQCNAVKHCLQRVWS 34
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
196-273 7.22e-12

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


:

Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 60.97  E-value: 7.22e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 110224479   196 DVCQDCIQMVTDIQTAVRTNSTfVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHMDqQPKEICALVGFC 273
Cdd:smart00741   1 LLCELCEFVVKQLENLLKDNKT-EEEIKKALEKVCKKLPKSLSDQCKEFVDQYGPEIIDLLEQGL-DPKDVCQKLGLC 76
 
Name Accession Description Interval E-value
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
317-390 3.72e-20

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 84.47  E-value: 3.72e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110224479   317 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 390
Cdd:smart00741   3 CELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
410-484 9.30e-18

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 77.92  E-value: 9.30e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110224479   410 FCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 484
Cdd:smart00741   2 LCELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
61-138 9.67e-18

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 77.53  E-value: 9.67e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 110224479    61 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPnMSASCKEIVDSYLPVILDIIKGEMSrPGEVCSALNLC 138
Cdd:smart00741   1 LLCELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKS-LSDQCKEFVDQYGPEIIDLLEQGLD-PKDVCQKLGLC 76
SapA pfam02199
Saposin A-type domain;
494-526 4.87e-16

Saposin A-type domain;


Pssm-ID: 460487  Cd Length: 33  Bit Score: 71.46  E-value: 4.87e-16
                          10        20        30
                  ....*....|....*....|....*....|...
gi 110224479  494 TEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN 526
Cdd:pfam02199   1 PDECTWGPSYWCQDLETAKECGAVEHCQQHVWN 33
SAPA smart00162
Saposin/surfactant protein-B A-type DOMAIN; Present as four and three degenerate copies, ...
21-54 1.33e-15

Saposin/surfactant protein-B A-type DOMAIN; Present as four and three degenerate copies, respectively, in prosaposin and surfactant protein B. Single copies in acid sphingomyelinase, NK-lysin amoebapores and granulysin. Putative phospholipid membrane binding domains.


Pssm-ID: 128465  Cd Length: 34  Bit Score: 70.24  E-value: 1.33e-15
                           10        20        30
                   ....*....|....*....|....*....|....
gi 110224479    21 GLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWN 54
Cdd:smart00162   1 GPKRCTWGPSVWCQNLETASQCNAVKHCLQRVWS 34
SAPA smart00162
Saposin/surfactant protein-B A-type DOMAIN; Present as four and three degenerate copies, ...
493-526 1.94e-15

Saposin/surfactant protein-B A-type DOMAIN; Present as four and three degenerate copies, respectively, in prosaposin and surfactant protein B. Single copies in acid sphingomyelinase, NK-lysin amoebapores and granulysin. Putative phospholipid membrane binding domains.


Pssm-ID: 128465  Cd Length: 34  Bit Score: 69.85  E-value: 1.94e-15
                           10        20        30
                   ....*....|....*....|....*....|....
gi 110224479   493 GTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN 526
Cdd:smart00162   1 GPKRCTWGPSVWCQNLETASQCNAVKHCLQRVWS 34
SapA pfam02199
Saposin A-type domain;
23-54 5.91e-14

Saposin A-type domain;


Pssm-ID: 460487  Cd Length: 33  Bit Score: 65.68  E-value: 5.91e-14
                          10        20        30
                  ....*....|....*....|....*....|..
gi 110224479   23 KECTRGSAVWCQNVKTASDCGAVKHCLQTVWN 54
Cdd:pfam02199   2 DECTWGPSYWCQDLETAKECGAVEHCQQHVWN 33
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
196-273 7.22e-12

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 60.97  E-value: 7.22e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 110224479   196 DVCQDCIQMVTDIQTAVRTNSTfVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHMDqQPKEICALVGFC 273
Cdd:smart00741   1 LLCELCEFVVKQLENLLKDNKT-EEEIKKALEKVCKKLPKSLSDQCKEFVDQYGPEIIDLLEQGL-DPKDVCQKLGLC 76
SapB_1 pfam05184
Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for ...
317-352 9.77e-09

Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 461575  Cd Length: 38  Bit Score: 51.06  E-value: 9.77e-09
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 110224479  317 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLP 352
Cdd:pfam05184   3 CDLCEFVVKELEKLLKDNKTEEEIIKALEKVCSKLP 38
SapB_1 pfam05184
Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for ...
61-98 1.47e-08

Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 461575  Cd Length: 38  Bit Score: 50.29  E-value: 1.47e-08
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 110224479   61 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLP 98
Cdd:pfam05184   1 PLCDLCEFVVKELEKLLKDNKTEEEIIKALEKVCSKLP 38
SapB_1 pfam05184
Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for ...
410-446 1.76e-07

Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 461575  Cd Length: 38  Bit Score: 47.60  E-value: 1.76e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 110224479  410 FCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLP 446
Cdd:pfam05184   2 LCDLCEFVVKELEKLLKDNKTEEEIIKALEKVCSKLP 38
SapB_2 pfam03489
Saposin-like type B, region 2; Saposin B is a small non-enzymatic glycoprotein required for ...
239-273 1.32e-03

Saposin-like type B, region 2; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 460945  Cd Length: 34  Bit Score: 36.40  E-value: 1.32e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 110224479  239 DICKNYISQYSEIAIQMMMHMdQQPKEICALVGFC 273
Cdd:pfam03489   1 DECKSLVDQYGPLIIDLLESE-LDPKDVCTALGLC 34
 
Name Accession Description Interval E-value
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
317-390 3.72e-20

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 84.47  E-value: 3.72e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110224479   317 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 390
Cdd:smart00741   3 CELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
410-484 9.30e-18

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 77.92  E-value: 9.30e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110224479   410 FCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 484
Cdd:smart00741   2 LCELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
61-138 9.67e-18

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 77.53  E-value: 9.67e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 110224479    61 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPnMSASCKEIVDSYLPVILDIIKGEMSrPGEVCSALNLC 138
Cdd:smart00741   1 LLCELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKS-LSDQCKEFVDQYGPEIIDLLEQGLD-PKDVCQKLGLC 76
SapA pfam02199
Saposin A-type domain;
494-526 4.87e-16

Saposin A-type domain;


Pssm-ID: 460487  Cd Length: 33  Bit Score: 71.46  E-value: 4.87e-16
                          10        20        30
                  ....*....|....*....|....*....|...
gi 110224479  494 TEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN 526
Cdd:pfam02199   1 PDECTWGPSYWCQDLETAKECGAVEHCQQHVWN 33
SAPA smart00162
Saposin/surfactant protein-B A-type DOMAIN; Present as four and three degenerate copies, ...
21-54 1.33e-15

Saposin/surfactant protein-B A-type DOMAIN; Present as four and three degenerate copies, respectively, in prosaposin and surfactant protein B. Single copies in acid sphingomyelinase, NK-lysin amoebapores and granulysin. Putative phospholipid membrane binding domains.


Pssm-ID: 128465  Cd Length: 34  Bit Score: 70.24  E-value: 1.33e-15
                           10        20        30
                   ....*....|....*....|....*....|....
gi 110224479    21 GLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWN 54
Cdd:smart00162   1 GPKRCTWGPSVWCQNLETASQCNAVKHCLQRVWS 34
SAPA smart00162
Saposin/surfactant protein-B A-type DOMAIN; Present as four and three degenerate copies, ...
493-526 1.94e-15

Saposin/surfactant protein-B A-type DOMAIN; Present as four and three degenerate copies, respectively, in prosaposin and surfactant protein B. Single copies in acid sphingomyelinase, NK-lysin amoebapores and granulysin. Putative phospholipid membrane binding domains.


Pssm-ID: 128465  Cd Length: 34  Bit Score: 69.85  E-value: 1.94e-15
                           10        20        30
                   ....*....|....*....|....*....|....
gi 110224479   493 GTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN 526
Cdd:smart00162   1 GPKRCTWGPSVWCQNLETASQCNAVKHCLQRVWS 34
SapA pfam02199
Saposin A-type domain;
23-54 5.91e-14

Saposin A-type domain;


Pssm-ID: 460487  Cd Length: 33  Bit Score: 65.68  E-value: 5.91e-14
                          10        20        30
                  ....*....|....*....|....*....|..
gi 110224479   23 KECTRGSAVWCQNVKTASDCGAVKHCLQTVWN 54
Cdd:pfam02199   2 DECTWGPSYWCQDLETAKECGAVEHCQQHVWN 33
SapB smart00741
Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary ...
196-273 7.22e-12

Saposin (B) Domains; Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.


Pssm-ID: 214797 [Multi-domain]  Cd Length: 76  Bit Score: 60.97  E-value: 7.22e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 110224479   196 DVCQDCIQMVTDIQTAVRTNSTfVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHMDqQPKEICALVGFC 273
Cdd:smart00741   1 LLCELCEFVVKQLENLLKDNKT-EEEIKKALEKVCKKLPKSLSDQCKEFVDQYGPEIIDLLEQGL-DPKDVCQKLGLC 76
SapB_1 pfam05184
Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for ...
317-352 9.77e-09

Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 461575  Cd Length: 38  Bit Score: 51.06  E-value: 9.77e-09
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 110224479  317 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLP 352
Cdd:pfam05184   3 CDLCEFVVKELEKLLKDNKTEEEIIKALEKVCSKLP 38
SapB_1 pfam05184
Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for ...
61-98 1.47e-08

Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 461575  Cd Length: 38  Bit Score: 50.29  E-value: 1.47e-08
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 110224479   61 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLP 98
Cdd:pfam05184   1 PLCDLCEFVVKELEKLLKDNKTEEEIIKALEKVCSKLP 38
SapB_1 pfam05184
Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for ...
410-446 1.76e-07

Saposin-like type B, region 1; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 461575  Cd Length: 38  Bit Score: 47.60  E-value: 1.76e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 110224479  410 FCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLP 446
Cdd:pfam05184   2 LCDLCEFVVKELEKLLKDNKTEEEIIKALEKVCSKLP 38
SapB_2 pfam03489
Saposin-like type B, region 2; Saposin B is a small non-enzymatic glycoprotein required for ...
357-390 2.68e-07

Saposin-like type B, region 2; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 460945  Cd Length: 34  Bit Score: 46.80  E-value: 2.68e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 110224479  357 EECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 390
Cdd:pfam03489   1 DECKSLVDQYGPLIIDLLESELDPKDVCTALGLC 34
SapB_2 pfam03489
Saposin-like type B, region 2; Saposin B is a small non-enzymatic glycoprotein required for ...
451-484 4.37e-06

Saposin-like type B, region 2; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 460945  Cd Length: 34  Bit Score: 43.33  E-value: 4.37e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 110224479  451 KQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 484
Cdd:pfam03489   1 DECKSLVDQYGPLIIDLLESELDPKDVCTALGLC 34
SapB_2 pfam03489
Saposin-like type B, region 2; Saposin B is a small non-enzymatic glycoprotein required for ...
106-138 8.07e-05

Saposin-like type B, region 2; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 460945  Cd Length: 34  Bit Score: 39.87  E-value: 8.07e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 110224479  106 CKEIVDSYLPVILDIIKGEMSrPGEVCSALNLC 138
Cdd:pfam03489   3 CKSLVDQYGPLIIDLLESELD-PKDVCTALGLC 34
SapB_2 pfam03489
Saposin-like type B, region 2; Saposin B is a small non-enzymatic glycoprotein required for ...
239-273 1.32e-03

Saposin-like type B, region 2; Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. It is one of the most studied members of the saposin protein family and it is involved in the hydrolysis of glycolipids and glycerolipids. SapB is unique in the saposin family in that it facilitates degradation by interacting with the substrate, not the enzymes.


Pssm-ID: 460945  Cd Length: 34  Bit Score: 36.40  E-value: 1.32e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 110224479  239 DICKNYISQYSEIAIQMMMHMdQQPKEICALVGFC 273
Cdd:pfam03489   1 DECKSLVDQYGPLIIDLLESE-LDPKDVCTALGLC 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH