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Conserved domains on  [gi|111494239|ref|NP_001035167|]
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galectin-9C [Homo sapiens]

Protein Classification

galectin family protein( domain architecture ID 10049251)

galectin family protein may exclusively bind beta-galactosides such as lactose in a manner independent of metal ions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gal-bind_lectin smart00908
Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are ...
 233-355 1.01e-51

Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction.


:

Pssm-ID: 214904  Cd Length: 122  Bit Score: 167.77  E-value: 1.01e-51
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239   233 PGGLYPSKSIILSGTVLPSAQRFHINLCSG--SHIAFHMNPRFDENAVVRNTQINNSWGSEERSlpRKMPFVRGQSFSVW 310
Cdd:smart00908   1 PGGLSPGSSITIRGIVLPDAKRFSINLQCGpnADIALHFNPRFDEGTIVRNSKQNGKWGKEERS--GGFPFQPGQPFELE 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 111494239   311 ILCEAHCLKVAVDGQHVFEYYHRLrNLPTINKLEVGGDIQLTHVQ 355
Cdd:smart00908  79 ILVEEDEFKVAVNGQHFLEFPHRL-PLESIDTLEISGDVQLTSVQ 122
GLECT cd00070
Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as ...
 16-146 2.45e-50

Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.


:

Pssm-ID: 238025  Cd Length: 127  Bit Score: 164.34  E-value: 2.45e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239  16 PFSGTIQGGLQDGFQITVNGAVLScSGTRFAVDFQTGfsGNDIAFHFNPRFeDGGYVVCNTRQKGTWGPEERKMHMPFQK 95
Cdd:cd00070    1 PYKLPLPGGLKPGSTLTVKGRVLP-NAKRFSINLGTG--SSDIALHFNPRF-DENVIVRNSFLNGNWGPEERSGGFPFQP 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 111494239  96 GMPFDLCFLVQSSDFKVMVNGSLFVQYFHRVPFHRVDTISVNGSVQLSYIS 146
Cdd:cd00070   77 GQPFELTILVEEDKFQIFVNGQHFFSFPHRLPLESIDYLSINGDVSLTSVE 127
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
150-227 2.99e-04

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14951:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 2.99e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111494239 150 PRAVPVQPAFSTVPFSQPVcfPPRPRGRRQKPPSVRPANPAPITQTVIHTVQSASGQMFSQTPAIPPMMYPHPAYPMP 227
Cdd:PRK14951 400 APAPAAAPAAAASAPAAPP--AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475
 
Name Accession Description Interval E-value
Gal-bind_lectin smart00908
Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are ...
 233-355 1.01e-51

Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction.


Pssm-ID: 214904  Cd Length: 122  Bit Score: 167.77  E-value: 1.01e-51
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239   233 PGGLYPSKSIILSGTVLPSAQRFHINLCSG--SHIAFHMNPRFDENAVVRNTQINNSWGSEERSlpRKMPFVRGQSFSVW 310
Cdd:smart00908   1 PGGLSPGSSITIRGIVLPDAKRFSINLQCGpnADIALHFNPRFDEGTIVRNSKQNGKWGKEERS--GGFPFQPGQPFELE 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 111494239   311 ILCEAHCLKVAVDGQHVFEYYHRLrNLPTINKLEVGGDIQLTHVQ 355
Cdd:smart00908  79 ILVEEDEFKVAVNGQHFLEFPHRL-PLESIDTLEISGDVQLTSVQ 122
GLECT cd00070
Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as ...
 16-146 2.45e-50

Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.


Pssm-ID: 238025  Cd Length: 127  Bit Score: 164.34  E-value: 2.45e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239  16 PFSGTIQGGLQDGFQITVNGAVLScSGTRFAVDFQTGfsGNDIAFHFNPRFeDGGYVVCNTRQKGTWGPEERKMHMPFQK 95
Cdd:cd00070    1 PYKLPLPGGLKPGSTLTVKGRVLP-NAKRFSINLGTG--SSDIALHFNPRF-DENVIVRNSFLNGNWGPEERSGGFPFQP 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 111494239  96 GMPFDLCFLVQSSDFKVMVNGSLFVQYFHRVPFHRVDTISVNGSVQLSYIS 146
Cdd:cd00070   77 GQPFELTILVEEDKFQIFVNGQHFFSFPHRLPLESIDYLSINGDVSLTSVE 127
GLECT cd00070
Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as ...
 227-355 5.79e-50

Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.


Pssm-ID: 238025  Cd Length: 127  Bit Score: 163.19  E-value: 5.79e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239 227 PFITTIPGGLYPSKSIILSGTVLPSAQRFHINL-CSGSHIAFHMNPRFDENAVVRNTQINNSWGSEERSlpRKMPFVRGQ 305
Cdd:cd00070    1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLgTGSSDIALHFNPRFDENVIVRNSFLNGNWGPEERS--GGFPFQPGQ 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 111494239 306 SFSVWILCEAHCLKVAVDGQHVFEYYHRLRnLPTINKLEVGGDIQLTHVQ 355
Cdd:cd00070   79 PFELTILVEEDKFQIFVNGQHFFSFPHRLP-LESIDYLSINGDVSLTSVE 127
Gal-bind_lectin smart00908
Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are ...
 22-146 1.52e-48

Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction.


Pssm-ID: 214904  Cd Length: 122  Bit Score: 159.68  E-value: 1.52e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239    22 QGGLQDGFQITVNGAVLScSGTRFAVDFQTGfSGNDIAFHFNPRFeDGGYVVCNTRQKGTWGPEERKMHMPFQKGMPFDL 101
Cdd:smart00908   1 PGGLSPGSSITIRGIVLP-DAKRFSINLQCG-PNADIALHFNPRF-DEGTIVRNSKQNGKWGKEERSGGFPFQPGQPFEL 77

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 111494239   102 CFLVQSSDFKVMVNGSLFVQYFHRVPFHRVDTISVNGSVQLSYIS 146
Cdd:smart00908  78 EILVEEDEFKVAVNGQHFLEFPHRLPLESIDTLEISGDVQLTSVQ 122
Gal-bind_lectin pfam00337
Galactoside-binding lectin; This family contains galactoside binding lectins. The family also ...
 233-355 6.52e-46

Galactoside-binding lectin; This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5).


Pssm-ID: 459768  Cd Length: 124  Bit Score: 152.79  E-value: 6.52e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239  233 PGGLYPSKSIILSGTVLPSAQRFHINLCSG----SHIAFHMNPRFDENAVVRNTQINNSWGSEERSLprKMPFVRGQSFS 308
Cdd:pfam00337   1 PGGLQPGSSLTIKGIVLPDAQRFSINLQTGvgpsDDIALHFNPRFDENVIVRNSRQNGQWGQEEREG--GFPFQPGQPFE 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 111494239  309 VWILCEAHCLKVAVDGQHVFEYYHRLRNlPTINKLEVGGDIQLTHVQ 355
Cdd:pfam00337  79 LTILVGDDHFKIYVNGQHFTTFKHRLPP-EDIDALQVRGDVKLTSVL 124
Gal-bind_lectin pfam00337
Galactoside-binding lectin; This family contains galactoside binding lectins. The family also ...
 22-146 3.99e-45

Galactoside-binding lectin; This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5).


Pssm-ID: 459768  Cd Length: 124  Bit Score: 150.87  E-value: 3.99e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239   22 QGGLQDGFQITVNGAVLScSGTRFAVDFQTG-FSGNDIAFHFNPRFeDGGYVVCNTRQKGTWGPEERKMHMPFQKGMPFD 100
Cdd:pfam00337   1 PGGLQPGSSLTIKGIVLP-DAQRFSINLQTGvGPSDDIALHFNPRF-DENVIVRNSRQNGQWGQEEREGGFPFQPGQPFE 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 111494239  101 LCFLVQSSDFKVMVNGSLFVQYFHRVPFHRVDTISVNGSVQLSYIS 146
Cdd:pfam00337  79 LTILVGDDHFKIYVNGQHFTTFKHRLPPEDIDALQVRGDVKLTSVL 124
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 150-227 2.99e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 2.99e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111494239 150 PRAVPVQPAFSTVPFSQPVcfPPRPRGRRQKPPSVRPANPAPITQTVIHTVQSASGQMFSQTPAIPPMMYPHPAYPMP 227
Cdd:PRK14951 400 APAPAAAPAAAASAPAAPP--AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475
 
Name Accession Description Interval E-value
Gal-bind_lectin smart00908
Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are ...
 233-355 1.01e-51

Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction.


Pssm-ID: 214904  Cd Length: 122  Bit Score: 167.77  E-value: 1.01e-51
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239   233 PGGLYPSKSIILSGTVLPSAQRFHINLCSG--SHIAFHMNPRFDENAVVRNTQINNSWGSEERSlpRKMPFVRGQSFSVW 310
Cdd:smart00908   1 PGGLSPGSSITIRGIVLPDAKRFSINLQCGpnADIALHFNPRFDEGTIVRNSKQNGKWGKEERS--GGFPFQPGQPFELE 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 111494239   311 ILCEAHCLKVAVDGQHVFEYYHRLrNLPTINKLEVGGDIQLTHVQ 355
Cdd:smart00908  79 ILVEEDEFKVAVNGQHFLEFPHRL-PLESIDTLEISGDVQLTSVQ 122
GLECT cd00070
Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as ...
 16-146 2.45e-50

Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.


Pssm-ID: 238025  Cd Length: 127  Bit Score: 164.34  E-value: 2.45e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239  16 PFSGTIQGGLQDGFQITVNGAVLScSGTRFAVDFQTGfsGNDIAFHFNPRFeDGGYVVCNTRQKGTWGPEERKMHMPFQK 95
Cdd:cd00070    1 PYKLPLPGGLKPGSTLTVKGRVLP-NAKRFSINLGTG--SSDIALHFNPRF-DENVIVRNSFLNGNWGPEERSGGFPFQP 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 111494239  96 GMPFDLCFLVQSSDFKVMVNGSLFVQYFHRVPFHRVDTISVNGSVQLSYIS 146
Cdd:cd00070   77 GQPFELTILVEEDKFQIFVNGQHFFSFPHRLPLESIDYLSINGDVSLTSVE 127
GLECT cd00070
Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as ...
 227-355 5.79e-50

Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.


Pssm-ID: 238025  Cd Length: 127  Bit Score: 163.19  E-value: 5.79e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239 227 PFITTIPGGLYPSKSIILSGTVLPSAQRFHINL-CSGSHIAFHMNPRFDENAVVRNTQINNSWGSEERSlpRKMPFVRGQ 305
Cdd:cd00070    1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLgTGSSDIALHFNPRFDENVIVRNSFLNGNWGPEERS--GGFPFQPGQ 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 111494239 306 SFSVWILCEAHCLKVAVDGQHVFEYYHRLRnLPTINKLEVGGDIQLTHVQ 355
Cdd:cd00070   79 PFELTILVEEDKFQIFVNGQHFFSFPHRLP-LESIDYLSINGDVSLTSVE 127
Gal-bind_lectin smart00908
Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are ...
 22-146 1.52e-48

Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction.


Pssm-ID: 214904  Cd Length: 122  Bit Score: 159.68  E-value: 1.52e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239    22 QGGLQDGFQITVNGAVLScSGTRFAVDFQTGfSGNDIAFHFNPRFeDGGYVVCNTRQKGTWGPEERKMHMPFQKGMPFDL 101
Cdd:smart00908   1 PGGLSPGSSITIRGIVLP-DAKRFSINLQCG-PNADIALHFNPRF-DEGTIVRNSKQNGKWGKEERSGGFPFQPGQPFEL 77

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 111494239   102 CFLVQSSDFKVMVNGSLFVQYFHRVPFHRVDTISVNGSVQLSYIS 146
Cdd:smart00908  78 EILVEEDEFKVAVNGQHFLEFPHRLPLESIDTLEISGDVQLTSVQ 122
GLECT smart00276
Galectin; Galectin - galactose-binding lectin
 17-147 1.81e-46

Galectin; Galectin - galactose-binding lectin


Pssm-ID: 214596  Cd Length: 128  Bit Score: 154.31  E-value: 1.81e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239    17 FSGTIQGGLQDGFQITVNGAVLScSGTRFAVDFQTGfsGNDIAFHFNPRFEDGgYVVCNTRQKGTWGPEERKMHMPFQKG 96
Cdd:smart00276   1 FTLPIPGGLKPGQTLTVRGIVLP-DAKRFSINLLTG--GDDIALHFNPRFNEN-KIVCNSKLNGSWGSEEREGGFPFQPG 76

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 111494239    97 MPFDLCFLVQSSDFKVMVNGSLFVQYFHRVPFHRVDTISVNGSVQLSYISF 147
Cdd:smart00276  77 QPFDLTIIVQPDHFQIFVNGVHITTFPHRLPLESIDYLSINGDVQLTSVSF 127
Gal-bind_lectin pfam00337
Galactoside-binding lectin; This family contains galactoside binding lectins. The family also ...
 233-355 6.52e-46

Galactoside-binding lectin; This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5).


Pssm-ID: 459768  Cd Length: 124  Bit Score: 152.79  E-value: 6.52e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239  233 PGGLYPSKSIILSGTVLPSAQRFHINLCSG----SHIAFHMNPRFDENAVVRNTQINNSWGSEERSLprKMPFVRGQSFS 308
Cdd:pfam00337   1 PGGLQPGSSLTIKGIVLPDAQRFSINLQTGvgpsDDIALHFNPRFDENVIVRNSRQNGQWGQEEREG--GFPFQPGQPFE 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 111494239  309 VWILCEAHCLKVAVDGQHVFEYYHRLRNlPTINKLEVGGDIQLTHVQ 355
Cdd:pfam00337  79 LTILVGDDHFKIYVNGQHFTTFKHRLPP-EDIDALQVRGDVKLTSVL 124
GLECT smart00276
Galectin; Galectin - galactose-binding lectin
 228-355 1.46e-45

Galectin; Galectin - galactose-binding lectin


Pssm-ID: 214596  Cd Length: 128  Bit Score: 152.00  E-value: 1.46e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239   228 FITTIPGGLYPSKSIILSGTVLPSAQRFHINL-CSGSHIAFHMNPRFDENAVVRNTQINNSWGSEERSlpRKMPFVRGQS 306
Cdd:smart00276   1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLlTGGDDIALHFNPRFNENKIVCNSKLNGSWGSEERE--GGFPFQPGQP 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 111494239   307 FSVWILCEAHCLKVAVDGQHVFEYYHRLrNLPTINKLEVGGDIQLTHVQ 355
Cdd:smart00276  79 FDLTIIVQPDHFQIFVNGVHITTFPHRL-PLESIDYLSINGDVQLTSVS 126
Gal-bind_lectin pfam00337
Galactoside-binding lectin; This family contains galactoside binding lectins. The family also ...
 22-146 3.99e-45

Galactoside-binding lectin; This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5).


Pssm-ID: 459768  Cd Length: 124  Bit Score: 150.87  E-value: 3.99e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111494239   22 QGGLQDGFQITVNGAVLScSGTRFAVDFQTG-FSGNDIAFHFNPRFeDGGYVVCNTRQKGTWGPEERKMHMPFQKGMPFD 100
Cdd:pfam00337   1 PGGLQPGSSLTIKGIVLP-DAQRFSINLQTGvGPSDDIALHFNPRF-DENVIVRNSRQNGQWGQEEREGGFPFQPGQPFE 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 111494239  101 LCFLVQSSDFKVMVNGSLFVQYFHRVPFHRVDTISVNGSVQLSYIS 146
Cdd:pfam00337  79 LTILVGDDHFKIYVNGQHFTTFKHRLPPEDIDALQVRGDVKLTSVL 124
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 150-227 2.99e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 2.99e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111494239 150 PRAVPVQPAFSTVPFSQPVcfPPRPRGRRQKPPSVRPANPAPITQTVIHTVQSASGQMFSQTPAIPPMMYPHPAYPMP 227
Cdd:PRK14951 400 APAPAAAPAAAASAPAAPP--AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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