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Conserved domains on  [gi|85701953|ref|NP_001028609|]
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leucine-rich single-pass membrane protein 1 [Mus musculus]

Protein Classification

leucine-rich single-pass membrane protein 1( domain architecture ID 10633496)

leucine-rich single-pass membrane protein 1 (LSMEM1) is a DUF4577 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4577 pfam15145
Domain of unknown function (DUF4577); The function of this family of proteins, has not, as yet, ...
 1-128 1.30e-71

Domain of unknown function (DUF4577); The function of this family of proteins, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically 128 amino acids in length.


:

Pssm-ID: 464529  Cd Length: 128  Bit Score: 210.03  E-value: 1.30e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701953     1 MTHSSQDAGSHGIQEEGRLYVVDSINDLNKLSLCPMESQHLFSLEDKIPNAGTAPGNGRRGLFFVGLLLVLTVSLALVFF 80
Cdd:pfam15145   1 MNHSSQDIGSCGIHEDRKLYVVDSINDLNKLNLCPAGSQHLFPLEEKIPGGGTNSGNGSRSLFFVGLIIVLIVSLALVSF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 85701953    81 AIFLIIQTGNQMEDVSRRLTAEGKDIDDLKKINNMIVKRLNQLDSEQN 128
Cdd:pfam15145  81 VIFLIIQTGNKMDDVSRRLTAEGKDIDDLKKINSMIVKRLNQLDAEQN 128
 
Name Accession Description Interval E-value
DUF4577 pfam15145
Domain of unknown function (DUF4577); The function of this family of proteins, has not, as yet, ...
 1-128 1.30e-71

Domain of unknown function (DUF4577); The function of this family of proteins, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically 128 amino acids in length.


Pssm-ID: 464529  Cd Length: 128  Bit Score: 210.03  E-value: 1.30e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701953     1 MTHSSQDAGSHGIQEEGRLYVVDSINDLNKLSLCPMESQHLFSLEDKIPNAGTAPGNGRRGLFFVGLLLVLTVSLALVFF 80
Cdd:pfam15145   1 MNHSSQDIGSCGIHEDRKLYVVDSINDLNKLNLCPAGSQHLFPLEEKIPGGGTNSGNGSRSLFFVGLIIVLIVSLALVSF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 85701953    81 AIFLIIQTGNQMEDVSRRLTAEGKDIDDLKKINNMIVKRLNQLDSEQN 128
Cdd:pfam15145  81 VIFLIIQTGNKMDDVSRRLTAEGKDIDDLKKINSMIVKRLNQLDAEQN 128
 
Name Accession Description Interval E-value
DUF4577 pfam15145
Domain of unknown function (DUF4577); The function of this family of proteins, has not, as yet, ...
 1-128 1.30e-71

Domain of unknown function (DUF4577); The function of this family of proteins, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically 128 amino acids in length.


Pssm-ID: 464529  Cd Length: 128  Bit Score: 210.03  E-value: 1.30e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85701953     1 MTHSSQDAGSHGIQEEGRLYVVDSINDLNKLSLCPMESQHLFSLEDKIPNAGTAPGNGRRGLFFVGLLLVLTVSLALVFF 80
Cdd:pfam15145   1 MNHSSQDIGSCGIHEDRKLYVVDSINDLNKLNLCPAGSQHLFPLEEKIPGGGTNSGNGSRSLFFVGLIIVLIVSLALVSF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 85701953    81 AIFLIIQTGNQMEDVSRRLTAEGKDIDDLKKINNMIVKRLNQLDSEQN 128
Cdd:pfam15145  81 VIFLIIQTGNKMDDVSRRLTAEGKDIDDLKKINSMIVKRLNQLDAEQN 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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