|
Name |
Accession |
Description |
Interval |
E-value |
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
130-442 |
5.31e-10 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 61.68 E-value: 5.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 130 VSNSQLRQKISSLET-KLKASEEEK----QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQaRYREL----QEKHKQEL 200
Cdd:pfam17380 284 VSERQQQEKFEKMEQeRLRQEKEEKarevERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELerirQEERKREL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 201 EDMRKaghEALSIIVDEYKAL--LQ-------SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEV 262
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELerLQmerqqknERVRQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRR 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 263 LDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEMQKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 342
Cdd:pfam17380 440 LEEERAREMERVRLE-EQERQQQVERLRQ--QEEERKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 343 TEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELF 422
Cdd:pfam17380 510 EE-----ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVE 583
|
330 340
....*....|....*....|
gi 62078855 423 LSCAQKQLSAliATEPVDIE 442
Cdd:pfam17380 584 SEKARAEYEA--TTPITTIK 601
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
175-414 |
4.76e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 4.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 175 LKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHA 254
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 255 QHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVH 334
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 335 AEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 414
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
134-409 |
2.14e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 2.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 134 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSI 213
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELE-LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 214 IVDEYKALLQ-SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRL-----LEVLDTEKELLKEKIQEALTQQSQEQKE 287
Cdd:COG1196 322 EEELAELEEElEELEEELEELEEELEEAEEELEEAEAELAEAEEALLeaeaeLAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 288 TLGkcLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwktEHARDQERVAEAIQAAVQEQQRMS 367
Cdd:COG1196 402 LEE--LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA---ELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 62078855 368 QEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQ 409
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
143-413 |
3.81e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 3.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 143 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKA-- 220
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAde 1514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 221 LLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKEllKEKIQEAltQQSQEQKETLGKCLQEEMQKN 300
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE--KKKAEEA--KKAEEDKNMALRKAEEAKKAE 1590
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 301 KETLESAVKL--EKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAvQEQQRMSQEAVKAA 374
Cdd:PTZ00121 1591 EARIEEVMKLyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeekKKAEELKKA-EEENKIKAAEEAKK 1669
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 62078855 375 IAEEQRRSEKAM--EEAVKRTRDELVEYVREQRRLDQVTRQ 413
Cdd:PTZ00121 1670 AEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAEELKKK 1710
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
176-437 |
6.25e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 6.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 176 KEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEykALLQSSVKQQLDAIEKQYVSAIEKQAHrcEELLHAQ 255
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL--AELEAELEELRLELEELELELEEAQAE--EYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 256 HQRLLEVLDTEKELLKEkIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHA 335
Cdd:COG1196 297 LARLEQDIARLEERRRE-LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 336 EEREMWKtEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQRS 415
Cdd:COG1196 376 EAEEELE-ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260
....*....|....*....|..
gi 62078855 416 LSSLELFLSCAQKQLSALIATE 437
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLE 476
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
145-414 |
2.16e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 145 KLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQAryrelqEKHKQELEDMRKAghEALSIIVDEYKALLQS 224
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA------EEDKKKADELKKA--AAAKKKADEAKKKAEE 1429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 225 SVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETL 304
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 305 ESAVKLEK--EAMKDVITKAVEEERENLEKVHAEEREmwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAI--AEEQR 380
Cdd:PTZ00121 1510 KKADEAKKaeEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrkAEEAK 1587
|
250 260 270
....*....|....*....|....*....|....
gi 62078855 381 RSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 414
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
143-392 |
6.89e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 6.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 143 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQdaVSFQARYRELQEKHKQElEDMRKAGHEAlsiivDEYKALL 222
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE--LKKAEEKKKAEEAKKAE-EDKNMALRKA-----EEAKKAE 1590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 223 QSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKE 302
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 303 TLEsavKLEKEAMKdvitKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAVQEQQRMSQEAVKAAIAEE 378
Cdd:PTZ00121 1671 EED---KKKAEEAK----KAEEDEKKAAEALKKEAEEAKKAEELKKKEaeekKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
|
250
....*....|....
gi 62078855 379 QRRSEKAMEEAVKR 392
Cdd:PTZ00121 1744 KKAEEAKKDEEEKK 1757
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
133-392 |
1.25e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 133 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALS 212
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 213 IIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKE---------KIQEALTQQSQ 283
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEeeeeeealeEAAEEEAELEE 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 284 EQKETlgkcLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARD-QERVAEAIQAAVQE 362
Cdd:COG1196 457 EEEAL----LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAgLRGLAGAVAVLIGV 532
|
250 260 270
....*....|....*....|....*....|
gi 62078855 363 QQRMSQEAVKAAIAEEQRRSEKAMEEAVKR 392
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
133-374 |
2.46e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 133 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALS 212
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 213 IIVDEYKALLQSSVKQQLDAiekQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELlkEKIQEALTQQSQEQKEtlgkc 292
Cdd:COG4942 109 LLRALYRLGRQPPLALLLSP---EDFLDAVRRLQYLKYLAPARREQAEELRADLAEL--AALRAELEAERAELEA----- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 293 LQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMwktehardQERVAEAIQAAVQEQQRMSQEAVK 372
Cdd:COG4942 179 LLAELEEERAALEALKA-ERQKLLARLEKELAELAAELAELQQEAEEL--------EALIARLEAEAAAAAERTPAAGFA 249
|
..
gi 62078855 373 AA 374
Cdd:COG4942 250 AL 251
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
134-407 |
2.99e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 134 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLK-----EKEQDAVSFQARYRELQEKHKQELEDMRKAGH 208
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARleaevEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 209 EALSIIVDEyKALLQSSVKQQLDAIE--KQYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEaLTQQSQEQK 286
Cdd:TIGR02168 775 EELAEAEAE-IEELEAQIEQLKEELKalREALDELRAELTLLNEEAANLRERL-ESLERRIAATERRLED-LEEQIEELS 851
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 287 ETLGKC--LQEEMQKNKETLESAVKLEKEAmKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVA--EAIQAAVQE 362
Cdd:TIGR02168 852 EDIESLaaEIEELEELIEELESELEALLNE-RASLEEALALLRSELEELSEELRELESKRSELRRELEElrEKLAQLELR 930
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 62078855 363 QQRMSQEA--VKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRL 407
Cdd:TIGR02168 931 LEGLEVRIdnLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
137-391 |
3.23e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 137 QKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKD--FLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEalsii 214
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqILRERLANLERQLEELEAQLEELESKLDELAEELAE----- 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 215 VDEYKALLQSSVKQQLDAIEKQyvSAIEKQAHRCEELLHAQHQRLlevldtEKELLKEKIQEALTQQSQEQKETLGKCLQ 294
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEEL--EAELEELESRLEELEEQLETL------RSKVAQLELQIASLNNEIERLEARLERLE 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 295 EEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAA 374
Cdd:TIGR02168 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAERELAQLQARLD 492
|
250
....*....|....*..
gi 62078855 375 IAEEQRRSEKAMEEAVK 391
Cdd:TIGR02168 493 SLERLQENLEGFSEGVK 509
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
143-409 |
4.94e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 4.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 143 ETKLKASEEEK--QRIKKDVESLMEK-HSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYK 219
Cdd:PTZ00121 1312 EEAKKADEAKKkaEEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 220 ALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLH-AQHQRLLEVLDTEKEllKEKIQEALTQQSQEQKEtlGKCLQEEMQ 298
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKkAEEKKKADEAKKKAE--EAKKADEAKKKAEEAKK--AEEAKKKAE 1467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 299 KNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKaaiAEE 378
Cdd:PTZ00121 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK---AEE 1544
|
250 260 270
....*....|....*....|....*....|.
gi 62078855 379 QRRSEKaMEEAVKRTRDELVEYVREQRRLDQ 409
Cdd:PTZ00121 1545 KKKADE-LKKAEELKKAEEKKKAEEAKKAEE 1574
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
147-392 |
4.98e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 4.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 147 KASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKallqssv 226
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK------- 1613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 227 KQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLES 306
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 307 AVKLEKEAMK-DVITKAVEEERENLEKVH-AEEREMWKTEHARDQE----RVAEAIQAAVQEQQRMSQEAVKAAIAEEQR 380
Cdd:PTZ00121 1694 LKKEAEEAKKaEELKKKEAEEKKKAEELKkAEEENKIKAEEAKKEAeedkKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
250
....*....|....
gi 62078855 381 RSEK--AMEEAVKR 392
Cdd:PTZ00121 1774 RKEKeaVIEEELDE 1787
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
131-336 |
9.31e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 9.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 131 SNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDflkekeqdavsfQARYRELQEKHKQELEDMRKAGHeA 210
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE------------IERLKETIIKNNSEIKDLTNQDS-V 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 211 LSIIVDEYKAlLQSSVKQQLDAIEKQYVSAIEKQAHRCEELlhAQHQRLLEVLDTEKELLKEKIQEaLTQQSQEQKETLG 290
Cdd:TIGR04523 452 KELIIKNLDN-TRESLETQLKVLSRSINKIKQNLEQKQKEL--KSKEKELKKLNEEKKELEEKVKD-LTKKISSLKEKIE 527
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 62078855 291 KCLQEEMQKNKETLESAVKLEK---EAMKDVITKAVEEERENLEKVHAE 336
Cdd:TIGR04523 528 KLESEKKEKESKISDLEDELNKddfELKKENLEKEIDEKNKEIEELKQT 576
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
143-406 |
1.25e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 143 ETKLKASEEEK-QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQE----LEDMRKAGHEALSIIVDE 217
Cdd:PTZ00121 1474 EAKKKAEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEeakkADEAKKAEEKKKADELKK 1553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 218 YKALLQSSVKQQLDAIEKQYVSAiEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEAltqqsqeQKETLGKCLQEEM 297
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDK-NMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA-------KKAEEAKIKAEEL 1625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 298 QKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHA------EEREMWKTEHAR--DQERVAEAIQAAVQEQQRMSQE 369
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaeeakkAEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAE 1705
|
250 260 270
....*....|....*....|....*....|....*....
gi 62078855 370 AVKAAIAEEQRRSE--KAMEEAVKRTRDELVEYVREQRR 406
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEelKKAEEENKIKAEEAKKEAEEDKK 1744
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
134-372 |
1.59e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 134 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAV---SFQARYRELQEKHKQELEDMRK--AGH 208
Cdd:pfam12128 298 QWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEqlpSWQSELENLEERLKALTGKHQDvtAKY 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 209 EALSIIVDEYKALLQSSVKQQLDAIEKqyvsAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEkiqealtqqsqEQKET 288
Cdd:pfam12128 378 NRRRSKIKEQNNRDIAGIKDKLAKIRE----ARDRQLAVAEDDLQALESELREQLEAGKLEFNE-----------EEYRL 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 289 LGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQ 368
Cdd:pfam12128 443 KSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSAL 522
|
....
gi 62078855 369 EAVK 372
Cdd:pfam12128 523 DELE 526
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
127-437 |
3.44e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 127 GVHVSNSQLRQKISSLEtKLKASEEEKQRIKKdvESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKA 206
Cdd:PTZ00121 1054 GNHEGKAEAKAHVGQDE-GLKPSYKDFDFDAK--EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA 1130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 207 GHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLK----EKIQEALTQQS 282
Cdd:PTZ00121 1131 EEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKaedaRKAEAARKAEE 1210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 283 QEQKETLGKCLQEEMQKNKETLESAVKLEKEAmkdvitKAVEEERENLEKVHAEEREMW---------KTEHARDQERVA 353
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA------KKAEEERNNEEIRKFEEARMAhfarrqaaiKAEEARKADELK 1284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 354 EAIQAAVQEQQRMSQEAVKA----AIAEEQRRSEKAMEEA--VKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQ 427
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKKAdeakKKAEEAKKADEAKKKAeeAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
330
....*....|
gi 62078855 428 KQLSALIATE 437
Cdd:PTZ00121 1365 KAEAAEKKKE 1374
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
194-413 |
4.12e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 194 EKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQyvsaiekQAHRCEELLHAQHQRLLEVLDTEKEL---- 269
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE-------EARKADELKKAEEKKKADEAKKAEEKkkad 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 270 -LKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLE---SAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEH 345
Cdd:PTZ00121 1306 eAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62078855 346 ARDQERVAEAIQAAVQEQQRMSQEAVKAAiaEEQRRSEKAMEEA-VKRTRDELVEYVREQRRLDQVTRQ 413
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKADELKKAA--AAKKKADEAKKKAeEKKKADEAKKKAEEAKKADEAKKK 1452
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
133-379 |
4.85e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 133 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKagheals 212
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-LEALQAEIDKLQAEIAEAEAEIEERREELGE------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 213 IIVDEYKALLQSSVKQQL-------DAIEKqyVSAIEKqahrceelLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQ 285
Cdd:COG3883 91 RARALYRSGGSVSYLDVLlgsesfsDFLDR--LSALSK--------IADADADLLEELKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 286 KetlgkcLQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQR 365
Cdd:COG3883 161 A------LKAELEAAKAELEAQQA-EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
250
....*....|....
gi 62078855 366 MSQEAVKAAIAEEQ 379
Cdd:COG3883 234 AAAAAAAAAAASAA 247
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
89-307 |
9.84e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 9.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 89 VQLQQSAHTHLNIPLfplgltdeSNHGALALEDEPEgpgvhVSNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHS 168
Cdd:PRK04863 809 VQKLQRLHQAFSRFI--------GSHLAVAFEADPE-----AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 169 VLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRK-AGHEALSIIVDEYKALLQSSvKQQLDAIEKQYVSAIEKQA-- 245
Cdd:PRK04863 876 ALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFvQQHGNALAQLEPIVSVLQSD-PEQFEQLKQDYQQAQQTQRda 954
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 62078855 246 -----------HRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSqEQKETLgKCLQEEMQKNKETLESA 307
Cdd:PRK04863 955 kqqafaltevvQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERT-RAREQL-RQAQAQLAQYNQVLASL 1025
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
143-429 |
1.37e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 143 ETKLKASEEEKQRIK-KDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAghEALSIIVDEYKAL 221
Cdd:PTZ00121 1395 EAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA--EEAKKKAEEAKKA 1472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 222 LQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEALTQQSQEQKETLGKClqEEMQKNK 301
Cdd:PTZ00121 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK-KADEAKKAEEAKKADEAKKAEEAKKADEAKKA--EEKKKAD 1549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 302 ETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREmwKTEHARDQErvaeaIQAAVQEQQRMSQEAVKAAIAEEQRR 381
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK--KAEEARIEE-----VMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 62078855 382 SEKAMEEAVKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQKQ 429
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
214-389 |
1.45e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.56 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 214 IVDEYKALlQSSVKQQLDAiEKQYVSAIEKQAHRCEELLHAQHQRLLEVldtEKELLKEkiQEALTQQSQEQKETLGKCL 293
Cdd:PRK09510 60 VVEQYNRQ-QQQQKSAKRA-EEQRKKKEQQQAEELQQKQAAEQERLKQL---EKERLAA--QEQKKQAEEAAKQAALKQK 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 294 QEEMQKNKETLESAVKLEKEAMK-DVITKAVEEERENLE----KVHAEEREMWKTEHARDQERVAEAIQAAVQE-QQRMS 367
Cdd:PRK09510 133 QAEEAAAKAAAAAKAKAEAEAKRaAAAAKKAAAEAKKKAeaeaAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEaKKKAA 212
|
170 180
....*....|....*....|..
gi 62078855 368 QEAVKAAIAEEQRRSEKAMEEA 389
Cdd:PRK09510 213 AEAKKKAAAEAKAAAAKAAAEA 234
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
169-333 |
5.99e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 38.87 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 169 VLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDM------RKAGHEALSIIVDEYKallqssvkqqlDAIEKQyvsaiE 242
Cdd:pfam10168 543 VFREEYLKKHDLAREEIQKRVKLLKLQKEQQLQELqsleeeRKSLSERAEKLAEKYE-----------EIKDKQ-----E 606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 243 KQAHRCEELLHAQHQRLLEVLDTEKELLKEkiqealTQQSQEQKETLGKCLQE----------EMQKNKETLE-SAVKL- 310
Cdd:pfam10168 607 KLMRRCKKVLQRLNSQLPVLSDAEREMKKE------LETINEQLKHLANAIKQakkkmnyqryQIAKSQSIRKkSSLSLs 680
|
170 180
....*....|....*....|....*
gi 62078855 311 --EKEAMKDVITKAVEEERENLEKV 333
Cdd:pfam10168 681 ekQRKTIKEILKQLGSEIDELIKQV 705
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
134-342 |
6.28e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.27 E-value: 6.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 134 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKhsvlekdfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSI 213
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAE--------LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 214 ivdeykALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEkiqealTQQSQEQKETLGKCL 293
Cdd:TIGR02168 399 ------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE------LQEELERLEEALEEL 466
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 62078855 294 QEEMQKNKETLESAvkLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 342
Cdd:TIGR02168 467 REELEEAEQALDAA--ERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
136-307 |
6.29e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.13 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 136 RQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEK--------DFLKEKEQDAVSFQARYRELQekhkQELEDMRKAG 207
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQErrealqrlAEYSWDEIDVASAEREIAELE----AELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 208 HE--ALSIIVDEYKALLQSSVKQQLDAIEKQyvSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQ 285
Cdd:COG4913 685 DDlaALEEQLEELEAELEELEEELDELKGEI--GRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180
....*....|....*....|...
gi 62078855 286 KE-TLGKCLQEEMQKNKETLESA 307
Cdd:COG4913 763 VErELRENLEERIDALRARLNRA 785
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
134-377 |
7.14e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 38.90 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 134 QLRQKISSLETKLKA-SEEEKQRIKKDVESLMEKHSVLEK--DFLKEKEQDAVSFQARYRELQEKHKQELEDMR------ 204
Cdd:TIGR02169 269 EIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERsiAEKERELEDAEERLAKLEAEIDKLLAEIEELEreieee 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 205 KAGHEALSIIVDEYKALLQSSVkQQLDAIE----------KQYVSAIEKQAHRCEELLHAQH--QRLLEVLDTEKELLKE 272
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLR-AELEEVDkefaetrdelKDYREKLEKLKREINELKRELDrlQEELQRLSEELADLNA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 273 KIQEALTQQSQEQKETlgKCLQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERV 352
Cdd:TIGR02169 428 AIAGIEAKINELEEEK--EDKALEIKKQEWKLEQLAA-DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
250 260
....*....|....*....|....*
gi 62078855 353 AEAIQAAVQEQQRMSQEAVKAAIAE 377
Cdd:TIGR02169 505 RVRGGRAVEEVLKASIQGVHGTVAQ 529
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
135-414 |
7.21e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 38.88 E-value: 7.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 135 LRQKISSLETKLKASEEEKqRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELedmrKAGHEALSII 214
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYK-ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAEL----QELEEKLEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 215 VDEykallQSSVKQQLDAIEKQYVSAIEKQAhRCEELLHAQHQRLLEVLDTEKELlkEKIQEALTQQSQEQKETLG--KC 292
Cdd:TIGR02168 273 RLE-----VSELEEEIEELQKELYALANEIS-RLEQQKQILRERLANLERQLEEL--EAQLEELESKLDELAEELAelEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 293 LQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHA---------RDQERVAEAIQAAVQEQ 363
Cdd:TIGR02168 345 KLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASlnneierleARLERLEDRRERLQQEI 423
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 62078855 364 QRMSQEAVKAAIAEEQRRS---EKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 414
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELeelEEELEELQEELERLEEALEELREELEEAEQAL 477
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
257-413 |
9.03e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 38.39 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 257 QRLLEVldtEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKEtlesAVKLEKEAMkdvitkavEEERENLEKVHAE 336
Cdd:pfam15709 345 MRRLEV---ERKRREQEEQRRLQQEQLERAEKMREELELEQQRRFE----EIRLRKQRL--------EEERQRQEEEERK 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 337 EREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTR------DELVEYVREQRRLDQV 410
Cdd:pfam15709 410 QRLQLQAAQERARQQQEEFRRKLQELQRKKQQEEAERAEAEKQRQKELEMQLAEEQKRlmemaeEERLEYQRQKQEAEEK 489
|
...
gi 62078855 411 TRQ 413
Cdd:pfam15709 490 ARL 492
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
143-317 |
9.94e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 38.58 E-value: 9.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 143 ETKLKASEEEK-QRIKKDVESLMEKHsvlEKDFLKEKEQDAVSFQARYRELQEKHKQElEDMRKAgHEALSIIVDEYKAL 221
Cdd:PTZ00121 1617 EAKIKAEELKKaEEEKKKVEQLKKKE---AEEKKKAEELKKAEEENKIKAAEEAKKAE-EDKKKA-EEAKKAEEDEKKAA 1691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 222 LQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNK 301
Cdd:PTZ00121 1692 EALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
|
170
....*....|....*.
gi 62078855 302 ETLESAVKLEKEAMKD 317
Cdd:PTZ00121 1772 EIRKEKEAVIEEELDE 1787
|
|
| |
