|
Name |
Accession |
Description |
Interval |
E-value |
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
54-716 |
0e+00 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 689.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 54 RAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQ 133
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 134 CQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQA 213
Cdd:pfam05557 81 KKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 214 SQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQ 293
Cdd:pfam05557 161 QQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLERE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 294 EKMQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEEL 373
Cdd:pfam05557 241 EKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQEL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 374 RQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTPAEYSPQLTRRMREAEDMVQKVHSHSAEME 453
Cdd:pfam05557 321 AQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEME 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 454 AQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSflFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQG 533
Cdd:pfam05557 401 AQLSVAEEELGGYKQQAQTLERELQALRQQESLADPS--YSKEEVDSLRRKLETLELERQRLREQKNELEMELERRCLQG 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 534 DYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADLEAAAASLpSSKEVAELKKQVESAEL 613
Cdd:pfam05557 479 DYDPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTM-NFKEVLDLRKELESAEL 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 614 KNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVH 693
Cdd:pfam05557 558 KNQRLKEVFQAKIQEFRDVCYMLTGYQIDITTNSQYRLTSMYAEHPDDYLLFKLSGSNGSTMQLLETPFSRTLEPLIDLH 637
|
650 660
....*....|....*....|...
gi 62243374 694 LRRQDSIPAFLSSLTLELFSRQT 716
Cdd:pfam05557 638 LAAQKSIPAFLSALTLELFSRQT 660
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-579 |
6.05e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 88.46 E-value: 6.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 50 QLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARNYEREVDRNQE-LLTRIRQLQEREAGAEEKMQEQL 128
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELArLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 129 ERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKI 208
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 209 QELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLpRLERELKQLREESAHLREMRETNGLLQEELEGLQR 288
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE-AAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 289 KLGRQEKMQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQR-----ELALKDKNSAVTSSARGLE 363
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEaaleaALAAALQNIVVEDDEVAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 364 KARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTPAEYSPQLTRRMREAEDMV- 442
Cdd:COG1196 562 AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVt 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 443 --QKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKR 520
Cdd:COG1196 642 laGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 62243374 521 MLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 579
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
65-618 |
4.16e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 4.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 65 IQVEREKMQMELSHKRARvELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKR 144
Cdd:COG1196 218 LKEELKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 145 LREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQasQEARADHEQQ 224
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE--EALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 225 IKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGL----LQEELEGLQRKLGRQEKMQETL 300
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEalaeLEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 301 VGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQL 380
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 381 LEERKKRETHEAL--------ARRLQKRVLLLTKERDGMRAILGSYDSELTPAEYSPQLTRRMREAEDMVQkvhSHSAEM 452
Cdd:COG1196 535 AYEAALEAALAAAlqnivvedDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA---SDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 453 EAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ 532
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 533 GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR--AMERGGTVPADLEAAAASLPSSKEVAELKKQVES 610
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREelLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
....*...
gi 62243374 611 AELKNQRL 618
Cdd:COG1196 772 LEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
46-631 |
1.41e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 46 QQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRA-RVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKM 124
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAeLEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 125 QEQLERNRQCQQNLDAASKRLREKEdsLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKCQEA 204
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 205 NQKIQELQASQEARADHEQQIKDLEQKLS--------LQEQ-----------DAAIVKNMKSELVR-LPRLERELKQLRE 264
Cdd:TIGR02168 488 QARLDSLERLQENLEGFSEGVKALLKNQSglsgilgvLSELisvdegyeaaiEAALGGRLQAVVVEnLNAAKKAIAFLKQ 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 265 ESAHLREMRETNGLLQEELEGLQRK-LGRQEKMQETLVGLELENERLLAKLQSW-------ERLDQTMGLSIRTPEDlSR 336
Cdd:TIGR02168 568 NELGRVTFLPLDSIKGTEIQGNDREiLKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPG-YR 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 337 FVV-------------------------------ELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERK 385
Cdd:TIGR02168 647 IVTldgdlvrpggvitggsaktnssilerrreieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 386 KRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTpaeyspQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGG 465
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE------ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 466 QKQRADMLEMEL--------------KMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLE---- 527
Cdd:TIGR02168 801 LREALDELRAELtllneeaanlrerlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEalln 880
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 528 --------RRALQGDYDQSRTKVLHMSLNPTSV--ARQRLREDHSQLQAECERLRGLL-----RAMERGGTVPADLEAAA 592
Cdd:TIGR02168 881 erasleeaLALLRSELEELSEELRELESKRSELrrELEELREKLAQLELRLEGLEVRIdnlqeRLSEEYSLTLEEAEALE 960
|
650 660 670
....*....|....*....|....*....|....*....
gi 62243374 593 ASLPSskEVAELKKQVESAELKNQRLKEVFQTKIQEFRK 631
Cdd:TIGR02168 961 NKIED--DEEEARRRLKRLENKIKELGPVNLAAIEEYEE 997
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
94-617 |
2.61e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 2.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 94 RNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLdaasKRLREKEDSLAQAGETINALKGRISELQWSV 173
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL----PELREELEKLEKEVKELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 174 MDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQklslqeqdaaIVKNMKSELVRLP 253
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEE----------YLDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 254 RLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQEKMQETLvglelenERLLAKLQSWERLDQTmgLSIRTPED 333
Cdd:PRK03918 318 RLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY-------EEAKAKKEELERLKKR--LTGLTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 334 LSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQ---EELRQVSG-------QLLEERKKR--ETHEALARRLQKRV 401
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKkaiEELKKAKGkcpvcgrELTEEHRKEllEEYTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 402 LLLTKERDGMRAILGSYDSELTPAEYSPQLTRRMREAEDMVQKVHSHSAEmeaQLSQALEELGGQKQRADMLEMELKMLK 481
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 482 SQSSSAEQsflfsreeadtLRLKVEELEGERSRLEEEKRMLEAQLERRALQG-DYDQSRTKvlhmSLNPTSVARQRLRED 560
Cdd:PRK03918 546 KELEKLEE-----------LKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLK----ELEPFYNEYLELKDA 610
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 62243374 561 HSQLQAECERLRGLLRAMERGGTVPADLEAAAASLpsSKEVAELKKQVESAELKNQR 617
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEEL--RKELEELEKKYSEEEYEELR 665
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
46-524 |
4.77e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 4.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 46 QQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARN-YEREVDRNQELLTRIRQLQEREAGAEEKM 124
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEeLEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 125 QEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHK----- 199
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEeeael 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 200 --KCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNG 277
Cdd:COG1196 455 eeEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 278 LLQEELEGL------------------------QRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPED 333
Cdd:COG1196 535 AYEAALEAAlaaalqnivveddevaaaaieylkAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 334 LSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERdgmra 413
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA----- 689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 414 ilgsydseltpaeyspQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLf 493
Cdd:COG1196 690 ----------------EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA- 752
|
490 500 510
....*....|....*....|....*....|.
gi 62243374 494 srEEADTLRLKVEELEGERSRLEEEKRMLEA 524
Cdd:COG1196 753 --LEELPEPPDLEELERELERLEREIEALGP 781
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-416 |
9.58e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 9.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 100 VDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMR 179
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 180 VKRLESEKQELQEQLDLQHKKCQEANqkiQELQASQEARADHEQQIKDLEQKLslqeqdaaivKNMKSELVRLPRLEREL 259
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELA---EELAELEEKLEELKEELESLEAEL----------EELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 260 -KQLREESAHLREMRETNGLLQEELEGLQRKLGRQEKMQETlvgLELENERLLAKLQSWERLDQTMGLsirtpEDLSRFV 338
Cdd:TIGR02168 378 eEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER---LQQEIEELLKKLEEAELKELQAEL-----EELEEEL 449
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62243374 339 VELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEAlarrLQKRVLLLTKERDGMRAILG 416
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG----FSEGVKALLKNQSGLSGILG 523
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
347-627 |
5.32e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 5.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 347 ALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTPAE 426
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 427 YSP-QLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEADTLRLKV 505
Cdd:TIGR02168 316 RQLeELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 506 EELEGERSRLEEEKRMLEAQLER-----RALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMER 580
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERlqqeiEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 62243374 581 GGTVPADLEAAAASlpsskEVAELKKQVESAELKNQRLKEVFQTKIQ 627
Cdd:TIGR02168 476 ALDAAERELAQLQA-----RLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
152-509 |
1.42e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 1.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 152 LAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKCQ-EANQKIQELQASQEARADHEQQIKDLEQ 230
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 231 KLS-LQEQDAAIVKNMKSELVRLPRLERELKQLREESAhlREMRETNGLLQEELEGLQR----KLGRQEKMQETLVGLEL 305
Cdd:TIGR02169 252 ELEkLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ--LRVKEKIGELEAEIASLERsiaeKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 306 ENERLLAKLQSWErldqtmglsiRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERK 385
Cdd:TIGR02169 330 EIDKLLAEIEELE----------REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 386 KRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTpaeyspQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGG 465
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN------ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 62243374 466 QKQRADMLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELE 509
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLK 517
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
50-613 |
1.74e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 50 QLEERAEQIRSKSHLIQVEREKMQMELSHKRARVEleraasTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLE 129
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLA------NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 130 RNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQ 209
Cdd:TIGR02168 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 210 E--LQASQEARADHEQQIKDLEQKLSLQEQdaaivknmkselvrlpRLERELKQLREESAHLREMRETNGLLQEELEGLQ 287
Cdd:TIGR02168 432 EaeLKELQAELEELEEELEELQEELERLEE----------------ALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 288 RKLGRQEKMQETLVGLELENERLLAKLQS-WERLDQTMG----LSIRTPEDLSRFVVELQQREL----ALKDKNS----- 353
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLKNQSGLSGILGVlSELISVDEGyeaaIEAALGGRLQAVVVENLNAAKkaiaFLKQNELgrvtf 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 354 --AVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHE--------------------ALARRLQKRVLLLTKERDGM 411
Cdd:TIGR02168 576 lpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvddldnalELAKKLRPGYRIVTLDGDLV 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 412 RAIlGSYDSELTPAEYSPQLTRR-MREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQS 490
Cdd:TIGR02168 656 RPG-GVITGGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 491 FLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECER 570
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 62243374 571 LRG-LLRAMERGGTVPADLEAAAASLP-SSKEVAELKKQVESAEL 613
Cdd:TIGR02168 815 LNEeAANLRERLESLERRIAATERRLEdLEEQIEELSEDIESLAA 859
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
87-441 |
2.13e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 2.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 87 RAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRI 166
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 167 SELQWSVMDQEMRVKRLESEKQELQEQLDLQhkkcQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMK 246
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEEL----EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 247 SELVRLPRLERELKQLREESAHL----REMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQS-WERLD 321
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELqeqrIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKeRDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 322 QTMGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEElrqvSGQLLEERKKRETHEALARRLQKRv 401
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI----PEEELSLEDVQAELQRVEEEIRAL- 970
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 62243374 402 llltkERDGMRAILGSYDSELTPAEYSPQLTRRMREAEDM 441
Cdd:TIGR02169 971 -----EPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
41-320 |
5.18e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 5.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 41 LQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERA-------------ASTSARNYEREVDRNQELL 107
Cdd:TIGR02169 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEdlhkleealndleARLSHSRIPEIQAELSKLE 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 108 TRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEK 187
Cdd:TIGR02169 805 EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 188 QELQEQLDLQHKKCQEANQKIQELQASQEaraDHEQQIKDLEQKLS-LQEQDAAI---VKNMKSELVRLPRLERELKQLR 263
Cdd:TIGR02169 885 GDLKKERDELEAQLRELERKIEELEAQIE---KKRKRLSELKAKLEaLEEELSEIedpKGEDEEIPEEELSLEDVQAELQ 961
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 62243374 264 EESAHLREMRETNGLLQEELEGLQRKLGRQEKMQETlvgLELENERLLAKLQSWERL 320
Cdd:TIGR02169 962 RVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK---LEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
176-528 |
1.45e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 176 QEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQAsqeARADHEQQIKDLEQKLSLQEQDAAIVKNMKSEL-VRLPR 254
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ---ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELeEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 255 LERELKQLREESAHLR----EMRETNGLLQEELEGLQRKLGRQ--EKMQETLVGLELENERLLAKLQSwerLDQTMGLSI 328
Cdd:TIGR02169 749 LEQEIENVKSELKELEarieELEEDLHKLEEALNDLEARLSHSriPEIQAELSKLEEEVSRIEARLRE---IEQKLNRLT 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 329 RTPEDLSRFVVELQQRELALKDKnsavtssarglEKARQQLQEELRQVSGQLLEERKKretHEALARRLQKRVLLLTKER 408
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQRIDLKEQ-----------IKSIEKEIENLNGKKEELEEELEE---LEAALRDLESRLGDLKKER 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 409 DGMRAILGsydseltpaeyspQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELG-------------GQKQRADMLEM 475
Cdd:TIGR02169 892 DELEAQLR-------------ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSeiedpkgedeeipEEELSLEDVQA 958
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 62243374 476 ELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 528
Cdd:TIGR02169 959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
50-386 |
1.53e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.03 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 50 QLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELEraastsarnyEREvdrNQELLTRIRQLQEREAGAEEKMQEQLE 129
Cdd:TIGR04523 339 QLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----------KKE---NQSYKQEIKNLESQINDLESKIQNQEK 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 130 RNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDL-----------QH 198
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrsinkikqnLE 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 199 KKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSElvrlprLERELKQLREESAHLrEMRETNGL 278
Cdd:TIGR04523 486 QKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKE------KESKISDLEDELNKD-DFELKKEN 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 279 LQEELEGLQRKLgrqEKMQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLsrfVVELQQRELALKDKNSAVTSS 358
Cdd:TIGR04523 559 LEKEIDEKNKEI---EELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK---ISSLEKELEKAKKENEKLSSI 632
|
330 340
....*....|....*....|....*...
gi 62243374 359 ARGLEKARQQLQEELRQVSGQLLEERKK 386
Cdd:TIGR04523 633 IKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
51-532 |
2.06e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 51 LEERAEQIRSKSHLIQVEREKMQMELSHK-----RARVELERAAStSARNYEREVDRNQEllTRIRQLQEREAGAEEKMQ 125
Cdd:pfam15921 283 LTEKASSARSQANSIQSQLEIIQEQARNQnsmymRQLSDLESTVS-QLRSELREAKRMYE--DKIEELEKQLVLANSELT 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 126 E-QLERNRQCQQ--NLDAASKRL------REKEDSLAQAG-------ETINALKgrISELQWSVMDQEMRVKRLE----S 185
Cdd:pfam15921 360 EaRTERDQFSQEsgNLDDQLQKLladlhkREKELSLEKEQnkrlwdrDTGNSIT--IDHLRRELDDRNMEVQRLEallkA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 186 EKQELQEQLDLQHKKCQEANQK---------------------IQELQASQEARADHEQQIKDLEQklSLQEQDAAIvKN 244
Cdd:pfam15921 438 MKSECQGQMERQMAAIQGKNESlekvssltaqlestkemlrkvVEELTAKKMTLESSERTVSDLTA--SLQEKERAI-EA 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 245 MKSELVRL-PRLE---RELKQLREESAHLR-----------EMRETNG---LLQEELEGLQRKLGRQEK----MQETLVG 302
Cdd:pfam15921 515 TNAEITKLrSRVDlklQELQHLKNEGDHLRnvqtecealklQMAEKDKvieILRQQIENMTQLVGQHGRtagaMQVEKAQ 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 303 LELENERLLAKLQSWERLDQTMGLSIRtpeDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLle 382
Cdd:pfam15921 595 LEKEINDRRLELQEFKILKDKKDAKIR---ELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNEL-- 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 383 eRKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELtpaEYSPQLTRRMREAEDMVQKVhshSAEMEAQLSQALEE 462
Cdd:pfam15921 670 -NSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSEL---EQTRNTLKSMEGSDGHAMKV---AMGMQKQITAKRGQ 742
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62243374 463 LGGQKQRADMLE-------MELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ 532
Cdd:pfam15921 743 IDALQSKIQFLEeamtnanKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQ 819
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
40-625 |
2.71e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 40 SLQMQYQQSMQLEERAEQIRSKSHLIQVEREKmqmELSHKRARVELERAASTSARN-YEREVDRNQELLTRIR----QLQ 114
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELALLVLRLE---ELREELEELQEELKEAEEELEeLTAELQELEEKLEELRlevsELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 115 EREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQL 194
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 195 DLQHKKCQEANQKIQELQASQE----ARADHEQQIKDLEQKLSLQEQDAAIVKNMKSEL---VRLPRLERELKQLREESA 267
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLEtlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLqqeIEELLKKLEEAELKELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 268 HLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQRELA 347
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 348 LKDKNSAVTSSARGLEKArqqLQEELRQVSGQLLEERKK--RETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTPA 425
Cdd:TIGR02168 521 ILGVLSELISVDEGYEAA---IEAALGGRLQAVVVENLNaaKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 426 EYSPQLTRRMREAEDMVQKV------HSHSAEmeaQLSQALEEL-------------------------GGQKQRADMLE 474
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKAlsyllgGVLVVD---DLDNALELAkklrpgyrivtldgdlvrpggvitgGSAKTNSSILE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 475 --MELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSV 552
Cdd:TIGR02168 675 rrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 62243374 553 ARQRLREDHSQLQAECERLRGLLRAMERggtVPADLEAAAASLpsSKEVAELKKQVESAELKNQRLKEVFQTK 625
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEA---EIEELEAQIEQL--KEELKALREALDELRAELTLLNEEAANL 822
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
50-401 |
1.24e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 50 QLEERAEQIRSKSHLIQVEREKMQMElshkraRVELERAASTSARNYEREVdrnQELLTRIRQLQEREAGAEEKMQEQLE 129
Cdd:TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRRE------REKAERYQALLKEKREYEG---YELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 130 RNRQCQQNLDAASKRLREKEDSLAQAGETINAL-KGRISELQWSVMDQEMRVKRLESEKQELQEQLdlqhkkcQEANQKI 208
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKEREL-------EDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 209 QELQASQEA-RADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLprlereLKQLREESAHLREMRETNGLLQEELEGLQ 287
Cdd:TIGR02169 325 AKLEAEIDKlLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL------RAELEEVDKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 288 RKL----GRQEKMQETLVGLELENERLLAKLQSWErldqtmglsirtpEDLSRFVVELQQRELALKDKNSAVTSSARGLE 363
Cdd:TIGR02169 399 REInelkRELDRLQEELQRLSEELADLNAAIAGIE-------------AKINELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 62243374 364 KARQQ---LQEELRQVSGQLLEERKKRETHEALARRLQKRV 401
Cdd:TIGR02169 466 KYEQElydLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
211-413 |
3.22e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 3.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 211 LQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVR-LPRLERELKQLREEsahLREMRETNGLLQEELEGLQRk 289
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKqLAALERRIAALARR---IRALEQELAALEAELAELEK- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 290 lgRQEKMQETLVGLELENERLLAKLQSWERLDQTMGL--------SIRTPEDLSRFVVELQQRELALKDKNSAVTSSARG 361
Cdd:COG4942 91 --EIAELRAELEAQKEELAELLRALYRLGRQPPLALLlspedfldAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 62243374 362 LEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRA 413
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
42-570 |
4.26e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 4.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 42 QMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMEL--SHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAG 119
Cdd:PTZ00121 1261 RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 120 AEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISEL-----------QWSVMDQEMRVKRLESEKQ 188
Cdd:PTZ00121 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkadeakkkaeEDKKKADELKKAAAAKKKA 1420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 189 ELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVR-LPRLERELKQLREESA 267
Cdd:PTZ00121 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKkADEAKKKAEEAKKKAD 1500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 268 HLREMRETNGLLQEeleglQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQtmglsIRTPEDLSRF--VVELQQRE 345
Cdd:PTZ00121 1501 EAKKAAEAKKKADE-----AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE-----LKKAEELKKAeeKKKAEEAK 1570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 346 LALKDKNSAVTSS--ARGLEKARQQLQEELRQVSGQL-LEERKKRETHEALARRLQKRvlllTKERDGMRAILGSYDSEL 422
Cdd:PTZ00121 1571 KAEEDKNMALRKAeeAKKAEEARIEEVMKLYEEEKKMkAEEAKKAEEAKIKAEELKKA----EEEKKKVEQLKKKEAEEK 1646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 423 TPAEyspqltrRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREE---AD 499
Cdd:PTZ00121 1647 KKAE-------ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEkkkAE 1719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 500 TLR-------LKVEELEGERsrlEEEKRMLEA----QLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAEC 568
Cdd:PTZ00121 1720 ELKkaeeenkIKAEEAKKEA---EEDKKKAEEakkdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
..
gi 62243374 569 ER 570
Cdd:PTZ00121 1797 DK 1798
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
114-572 |
5.23e-06 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 50.18 E-value: 5.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 114 QEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGET--------INALKGRISELQWSVMDQEMRVKRLES 185
Cdd:PRK10246 375 QTSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAeqrplrqrLVALHGQIVPQQKRLAQLQVAIQNVTQ 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 186 EKQELQEQLDLQHKKCQEANQKIQELQASQEaradHEQQIKDLEQKLSLQE-----------QDAAIVKNMKSEL----V 250
Cdd:PRK10246 455 EQTQRNAALNEMRQRYKEKTQQLADVKTICE----QEARIKDLEAQRAQLQagqpcplcgstSHPAVEAYQALEPgvnqS 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 251 RLPRLERELKQLREESAHLREmretngllqeELEGLQRKLGRQEKMQETLvgleLENERLLAklQSWERLDQTMGLSIRT 330
Cdd:PRK10246 531 RLDALEKEVKKLGEEGAALRG----------QLDALTKQLQRDESEAQSL----RQEEQALT--QQWQAVCASLNITLQP 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 331 PEDLSRFVVELQQRE-------------LALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKK------RETHE 391
Cdd:PRK10246 595 QDDIQPWLDAQEEHErqlrllsqrhelqGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEaswlatRQQEA 674
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 392 ALARRLQKRVLLLTKERDGMRAILGSY-DSELTPAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQra 470
Cdd:PRK10246 675 QSWQQRQNELTALQNRIQQLTPLLETLpQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQA-- 752
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 471 dmlemelkmlksQSSSAEQSFLFSREEADTLRLKVEElegERSRLEEEKRMLEAQLER-RALQGDYDQSRTKVLHM---S 546
Cdd:PRK10246 753 ------------QFDTALQASVFDDQQAFLAALLDEE---TLTQLEQLKQNLENQRQQaQTLVTQTAQALAQHQQHrpdG 817
|
490 500
....*....|....*....|....*.
gi 62243374 547 LNPTSVARQRlredHSQLQAECERLR 572
Cdd:PRK10246 818 LDLTVTVEQI----QQELAQLAQQLR 839
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
46-566 |
5.63e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 5.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 46 QQSMQLEERAEQIRSKSHliqvEREK-MQMELSHKRARVELERAASTSARNYEREVDRNQELLTRIRQL----------- 113
Cdd:pfam15921 370 QESGNLDDQLQKLLADLH----KREKeLSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALlkamksecqgq 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 114 QEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQ 193
Cdd:pfam15921 446 MERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSR 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 194 LDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSE--------LVRLPRLERELKQLREE 265
Cdd:pfam15921 526 VDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagamQVEKAQLEKEINDRRLE 605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 266 SAHLREMRETNGLLQEELEGLQRKLgRQEKMQETLVGleleNERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQRE 345
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARVSDL-ELEKVKLVNAG----SERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLK 680
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 346 LALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTPA 425
Cdd:pfam15921 681 RNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA 760
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 426 EYSPQLtrrMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQR--ADMLEMELKMLKSQSSSAEQSFLFSREEADTLRL 503
Cdd:pfam15921 761 NKEKHF---LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRlkEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 62243374 504 KveelegersrleeekrmLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQA 566
Cdd:pfam15921 838 K-----------------LQHTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQSTA 883
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
79-219 |
7.83e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 48.94 E-value: 7.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 79 KRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAE-EKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGE 157
Cdd:PRK12705 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRErEELQREEERLVQKEEQLDARAEKLDNLENQLEEREK 112
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62243374 158 TINALKGRISELQWSVMDQEMRVKRLESE--KQELQEQLD--LQHKKCQEANQKIQELQASQEARA 219
Cdd:PRK12705 113 ALSARELELEELEKQLDNELYRVAGLTPEqaRKLLLKLLDaeLEEEKAQRVKKIEEEADLEAERKA 178
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
73-643 |
7.95e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 7.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 73 QMELSHKRARVELERAASTSARNY----------EREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAAS 142
Cdd:TIGR00606 391 QIKNFHTLVIERQEDEAKTAAQLCadlqskerlkQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSS 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 143 KRLREKEDSLaqagetinalkgRISELQWSVMDQEMRVKRLESEKQELQ-EQLDLQHKKCQEAnQKIQELQASQEARADH 221
Cdd:TIGR00606 471 DRILELDQEL------------RKAERELSKAEKNSLTETLKKEVKSLQnEKADLDRKLRKLD-QEMEQLNHHTTTRTQM 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 222 EQQIKD----LEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQEKMQ 297
Cdd:TIGR00606 538 EMLTKDkmdkDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESK 617
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 298 ETLVGLELENERLLAKLQSWE----RLDQTMGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEEL 373
Cdd:TIGR00606 618 EEQLSSYEDKLFDVCGSQDEEsdleRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFI 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 374 RQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELtpaeysPQLTRRMREAEDMVQKVHSHSAEME 453
Cdd:TIGR00606 698 SDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEI------PELRNKLQKVNRDIQRLKNDIEEQE 771
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 454 AQLSQALEELGGQKQ-RADMLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ 532
Cdd:TIGR00606 772 TLLGTIMPEEESAKVcLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKL 851
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 533 GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADleAAAASLPSSKEVAELKKQVESAE 612
Cdd:TIGR00606 852 IQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKD--AKEQDSPLETFLEKDQQEKEELI 929
|
570 580 590
....*....|....*....|....*....|.
gi 62243374 613 LKNQRLKEVFQTKIQEFRKACYTLTGYQIDI 643
Cdd:TIGR00606 930 SSKETSNKKAQDKVNDIKEKVKNIHGYMKDI 960
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
40-632 |
1.04e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 40 SLQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQmelSHKRARVELERAastsarNYEREVDRNQELLTRIRQLQEREAG 119
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAE---RYAAARERLAEL------EYLRAALRLWFAQRRLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 120 AEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQA-GETINALKGRIselqwsvmdqemrvKRLESEKQELQEQLDLQH 198
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREI--------------ERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 199 KKCQEANQKI----QELQASQEARADHEQQIKDLEQKLSLQEQDAAivknmkselVRLPRLERELKQLREEsahLREMRE 274
Cdd:COG4913 366 ALLAALGLPLpasaEEFAALRAEAAALLEALEEELEALEEALAEAE---------AALRDLRRELRELEAE---IASLER 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 275 TNGLLQEELEGLQRKLGRQEKMQET-------LVGLELENERllaklqsW----ERLDQTMGLSIRTPE----DLSRFVV 339
Cdd:COG4913 434 RKSNIPARLLALRDALAEALGLDEAelpfvgeLIEVRPEEER-------WrgaiERVLGGFALTLLVPPehyaAALRWVN 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 340 ELQQR--------ELALKDKNSAVTSSARGLEK-------ARQQLQEELRQVSGqlleeRKKRETHEALaRRLQKRVLL- 403
Cdd:COG4913 507 RLHLRgrlvyervRTGLPDPERPRLDPDSLAGKldfkphpFRAWLEAELGRRFD-----YVCVDSPEEL-RRHPRAITRa 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 404 -LTKERDGMRAIlgsydseltpaeyspQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKS 482
Cdd:COG4913 581 gQVKGNGTRHEK---------------DDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 483 QSSSAEQSFLFSREEADT--LRLKVEELEGERSRLEEEKRMLEA-QLERRALQGDYDQSRTKvlhmsLNPTSVARQRLRE 559
Cdd:COG4913 646 RREALQRLAEYSWDEIDVasAEREIAELEAELERLDASSDDLAAlEEQLEELEAELEELEEE-----LDELKGEIGRLEK 720
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62243374 560 DHSQLQAECERLRGLLRAMERGGTVP------ADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKA 632
Cdd:COG4913 721 ELEQAEEELDELQDRLEAAEDLARLElralleERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
126-532 |
1.26e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 126 EQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQ--WSVMDQEMRVKRLESEKQELQEQLDLQHKKCQE 203
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELReeLEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 204 ANQKIQELQASQEARADHEQQIKDLEQKLS--LQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQE 281
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEelLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 282 ELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTMGLS--IRTPEDLSRFVVELQQRELALKDKNSAVTSSA 359
Cdd:COG4717 231 QLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvLFLVLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 360 RGLEKARQQLQEELRQVSGqlLEERKKRETHEALARRLQKRVLLLTKERDGMR------------AILGSYDSElTPAEY 427
Cdd:COG4717 311 PALEELEEEELEELLAALG--LPPDLSPEELLELLDRIEELQELLREAEELEEelqleeleqeiaALLAEAGVE-DEEEL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 428 sPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELggQKQRADMLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEE 507
Cdd:COG4717 388 -RAALEQAEEYQELKEELEELEEQLEELLGELEELL--EALDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
410 420
....*....|....*....|....*..
gi 62243374 508 LEGER--SRLEEEKRMLEAQLERRALQ 532
Cdd:COG4717 465 LEEDGelAELLQELEELKAELRELAEE 491
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
51-527 |
1.29e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 51 LEERAEQIRSKshLIQVEREKMQMElSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEK------M 124
Cdd:PRK03918 212 ISSELPELREE--LEKLEKEVKELE-ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKvkelkeL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 125 QEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQwsvmDQEMRVKRLESEKQELQ---EQLDLQHKKC 201
Cdd:PRK03918 289 KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEkrlEELEERHELY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 202 QEANQKIQELQASQEARADHEqqIKDLEQKL-SLQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMR------- 273
Cdd:PRK03918 365 EEAKAKKEELERLKKRLTGLT--PEKLEKELeELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcg 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 274 ------ETNGLLQE---ELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQR 344
Cdd:PRK03918 443 relteeHRKELLEEytaELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEK 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 345 ELALKDKnsaVTSSARGLEKARQQLQEELRQVSGQlleERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTP 424
Cdd:PRK03918 523 KAEEYEK---LKEKLIKLKGEIKSLKKELEKLEEL---KKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 425 AEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSqsssaeqsfLFSREEADTLRLK 504
Cdd:PRK03918 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK---------KYSEEEYEELREE 667
|
490 500
....*....|....*....|...
gi 62243374 505 VEELEGERSRLEEEKRMLEAQLE 527
Cdd:PRK03918 668 YLELSRELAGLRAELEELEKRRE 690
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
88-319 |
1.43e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 88 AASTSARNYEREVDRNQElltRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRIS 167
Cdd:COG4942 17 AQADAAAEAEAELEQLQQ---EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 168 ELQwsvmdqemrvKRLESEKQELQEQLDLQHKKcqeANQKIQELQASQEARADHEQQIKDLEQklsLQEQDAAIVKNMKS 247
Cdd:COG4942 94 ELR----------AELEAQKEELAELLRALYRL---GRQPPLALLLSPEDFLDAVRRLQYLKY---LAPARREQAEELRA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62243374 248 ELVRLPRLEREL----KQLREESAHLREMRETNGLLQEELEGLQRKLGRQEK-MQETLVGLELENERLLAKLQSWER 319
Cdd:COG4942 158 DLAELAALRAELeaerAELEALLAELEEERAALEALKAERQKLLARLEKELAeLAAELAELQQEAEELEALIARLEA 234
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
50-399 |
1.48e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 50 QLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSAR--------NYEREVDRNQELLTRIRQLQEREAGAE 121
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRerfgdapvDLGNAEDFLEELREERDELREREAELE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 122 EKMQEQLERNRQCQQNLDA---------------------ASKRLREKEDSLAQAGETINALKGRISELQwSVMDQEMRV 180
Cdd:PRK02224 433 ATLRTARERVEEAEALLEAgkcpecgqpvegsphvetieeDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRI 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 181 KRLESEKQELQEQLDLQHKKCQEANQKIQELqasQEARADHEQQIKDLEQKLSLQEQDAAivknmkSELVRLPRLERELK 260
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEEL---RERAAELEAEAEEKREAAAEAEEEAE------EAREEVAELNSKLA 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 261 QLREESAHLREMREtnglLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQswERLDQtmglsIRTPEDLSRfVVE 340
Cdd:PRK02224 583 ELKERIESLERIRT----LLAAIADAEDEIERLREKREALAELNDERRERLAEKR--ERKRE-----LEAEFDEAR-IEE 650
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 62243374 341 LQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQK 399
Cdd:PRK02224 651 AREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEA 709
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
367-632 |
1.60e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 367 QQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTpaeyspQLTRRMREAEDMVQKVH 446
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY------ALANEISRLEQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 447 SHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEqsflfsrEEADTLRLKVEELEGERSRLEEEKRMLEAQL 526
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK-------EELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 527 ERraLQGDYDQsrtkvLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADLEAAAASLPSSKEVAELKK 606
Cdd:TIGR02168 382 ET--LRSKVAQ-----LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
250 260
....*....|....*....|....*.
gi 62243374 607 QVESAELKNQRLKEVFQTKIQEFRKA 632
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAA 480
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
84-537 |
2.19e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 84 ELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKmQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALK 163
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAEL-QEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 164 griselqwsvmdqemRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDaaivk 243
Cdd:COG4717 133 ---------------ELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEE----- 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 244 nmkselvRLPRLERELKQLREESAHLREMRETnglLQEELEGLQRKLGRQEKMQETLVglelENERLLAKLQSWERLDQT 323
Cdd:COG4717 193 -------ELQDLAEELEELQQRLAELEEELEE---AQEELEELEEELEQLENELEAAA----LEERLKEARLLLLIAAAL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 324 MGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLL 403
Cdd:COG4717 259 LALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 404 LTKERDGMRAILgSYDSELTPAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQ 483
Cdd:COG4717 339 LLELLDRIEELQ-ELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 62243374 484 SSSAEQSFLFS--REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ 537
Cdd:COG4717 418 LEELLEALDEEelEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAE 473
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
78-394 |
2.62e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 78 HKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEE----------------KMQEQLERnrqCQQNLDAA 141
Cdd:COG3096 283 LSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQdyqaasdhlnlvqtalRQQEKIER---YQEDLEEL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 142 SKRLREKEDSLAQAGEtinalkgRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKcqeANQKIQELQASQEARA-- 219
Cdd:COG3096 360 TERLEEQEEVVEEAAE-------QLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTR---AIQYQQAVQALEKARAlc 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 220 ------------------DHEQQIK----DLEQKLSLQ-------EQDAAIVKNMKSELVRLPRLERELKQLRE--ESAH 268
Cdd:COG3096 430 glpdltpenaedylaafrAKEQQATeevlELEQKLSVAdaarrqfEKAYELVCKIAGEVERSQAWQTARELLRRyrSQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 269 LREMRETnglLQEELEGLQRKLGRQEKMQETLvglelenerllaklqswERLDQTMGLSIRTPEDLSRFVVELQQRELAL 348
Cdd:COG3096 510 LAQRLQQ---LRAQLAELEQRLRQQQNAERLL-----------------EEFCQRIGQQLDAAEELEELLAELEAQLEEL 569
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 62243374 349 KDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALA 394
Cdd:COG3096 570 EEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLR 615
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
98-527 |
3.33e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 98 REVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLRE-------KEDSLAQAGETINALKGRISELQ 170
Cdd:TIGR00618 184 MEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREalqqtqqSHAYLTQKREAQEEQLKKQQLLK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 171 WsVMDQEMRVKRLESEKQELQEQLDLQHKKC-------------QEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQ 237
Cdd:TIGR00618 264 Q-LRARIEELRAQEAVLEETQERINRARKAAplaahikavtqieQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 238 DAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKlqsw 317
Cdd:TIGR00618 343 QRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA---- 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 318 ERLDQTMGLSIRTPEDLSRFVVELQQreLALKDKNSAVTSSARGLEKARQQLQEE---LRQVSGQLLEERKKRETHEALA 394
Cdd:TIGR00618 419 FRDLQGQLAHAKKQQELQQRYAELCA--AAITCTAQCEKLEKIHLQESAQSLKEReqqLQTKEQIHLQETRKKAVVLARL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 395 RRLQKRVLLLTKErdgmraiLGSYDSELTPAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLE 474
Cdd:TIGR00618 497 LELQEEPCPLCGS-------CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 62243374 475 MELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLE 527
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQ 622
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
37-267 |
4.18e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 37 APGSLQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVE-LERAASTSARNYEREVDRNQELLTRIRQLQE 115
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAaLERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 116 REAGAEEKMQEQLErnrQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLD 195
Cdd:COG4942 91 EIAELRAELEAQKE---ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62243374 196 LQHKKCQEANQKIQELQASQE----ARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLP-RLERELKQLREESA 267
Cdd:COG4942 168 ELEAERAELEALLAELEEERAaleaLKAERQKLLARLEKELAELAAELAELQQEAEELEALIaRLEAEAAAAAERTP 244
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
188-401 |
1.09e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 45.45 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 188 QELQEQLDLQHKKCQEANQKIQELQASQEARADHEQ----QIKDLEqKLSLQE--------------------QDAAIVK 243
Cdd:COG0497 154 EELLEEYREAYRAWRALKKELEELRADEAERARELDllrfQLEELE-AAALQPgeeeeleeerrrlsnaeklrEALQEAL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 244 NMKSE-----LVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQekmqetLVGLELENERLlAKLQswE 318
Cdd:COG0497 233 EALSGgeggaLDLLGQALRALERLAEYDPSLAELAERLESALIELEEAASELRRY------LDSLEFDPERL-EEVE--E 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 319 RLDQTMGLSIR---TPEDLSRFVVELQQRELALKDKNSAVtssaRGLEKARQQLQEELRQVSGQLLEERKKretheaLAR 395
Cdd:COG0497 304 RLALLRRLARKygvTVEELLAYAEELRAELAELENSDERL----EELEAELAEAEAELLEAAEKLSAARKK------AAK 373
|
....*.
gi 62243374 396 RLQKRV 401
Cdd:COG0497 374 KLEKAV 379
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
51-292 |
1.47e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 51 LEERAEQIRSkshliqVEREKMQMELSHKRARVELERAasTSARNYEREVDRNQELLTRIRQL-QEREAGAEEKmQEQLE 129
Cdd:PRK02224 470 IEEDRERVEE------LEAELEDLEEEVEEVEERLERA--EDLVEAEDRIERLEERREDLEELiAERRETIEEK-RERAE 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 130 RNRQCQQNLDAASKRLRE----KEDSLAQAGETINALKG-------------RISELQWSVMDQEMRVKRLESEKQELQE 192
Cdd:PRK02224 541 ELRERAAELEAEAEEKREaaaeAEEEAEEAREEVAELNSklaelkeriesleRIRTLLAAIADAEDEIERLREKREALAE 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 193 QLDLQHKKCQEANQKIQELQAS------QEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREES 266
Cdd:PRK02224 621 LNDERRERLAEKRERKRELEAEfdeariEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERR 700
|
250 260
....*....|....*....|....*.
gi 62243374 267 AHLREMRETNGLLQEELEGLQRKLGR 292
Cdd:PRK02224 701 EALENRVEALEALYDEAEELESMYGD 726
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
340-629 |
1.48e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 340 ELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLE-ERKKRETHEALA------RRLQKRVLLLTKERDGMR 412
Cdd:TIGR02169 699 RIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEElEEDLSSLEQEIEnvkselKELEARIEELEEDLHKLE 778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 413 AILGSYDSELTPAEYsPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFL 492
Cdd:TIGR02169 779 EALNDLEARLSHSRI-PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 493 FSR-------EEADTLRLKVEELEGERSRLEEEKRMLEAQLerRALQGDYDQSRTKVlhmslnptsvarQRLREDHSQLQ 565
Cdd:TIGR02169 858 NLNgkkeeleEELEELEAALRDLESRLGDLKKERDELEAQL--RELERKIEELEAQI------------EKKRKRLSELK 923
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 62243374 566 AECERLRGLLRAMERggTVPADLEAAAASLPSSKevaeLKKQVESAELKNQRLKEVFQTKIQEF 629
Cdd:TIGR02169 924 AKLEALEEELSEIED--PKGEDEEIPEEELSLED----VQAELQRVEEEIRALEPVNMLAIQEY 981
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
79-375 |
2.11e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 79 KRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKM--QEQLERnrqCQQNLDAASKRLREKEDSLAQAG 156
Cdd:PRK04863 299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALrqQEKIER---YQADLEELEERLEEQNEVVEEAD 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 157 ETINALKGRISELqwsvmdqEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQ-----------------ASQEARA 219
Cdd:PRK04863 376 EQQEENEARAEAA-------EEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALErakqlcglpdltadnaeDWLEEFQ 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 220 DHEQQIKD----LEQKLSLQ-------EQDAAIVKNMKSELVRlprlERELKQLREESAHLREMRetngLLQEELEGLQR 288
Cdd:PRK04863 449 AKEQEATEellsLEQKLSVAqaahsqfEQAYQLVRKIAGEVSR----SEAWDVARELLRRLREQR----HLAEQLQQLRM 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 289 KLGRQEKMQEtlvgLELENERLLAKLQswerldQTMGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQ 368
Cdd:PRK04863 521 RLSELEQRLR----QQQRAERLLAEFC------KRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
|
....*..
gi 62243374 369 LQEELRQ 375
Cdd:PRK04863 591 LQARIQR 597
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
80-301 |
2.51e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 80 RARVELERAASTSARNYerevdrnqeLLTRIRQLQEREAGAEEKMQEQLERNR---------QCQQNLDAASKRLREKED 150
Cdd:COG3206 163 EQNLELRREEARKALEF---------LEEQLPELRKELEEAEAALEEFRQKNGlvdlseeakLLLQQLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 151 SLAQAGETINALKGRISELQWSVMD--QEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQAsqearadheqQIKDL 228
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRA----------QIAAL 303
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 62243374 229 EQklSLQEQDAAIVKNMKSELVRLprlERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQEKMQETLV 301
Cdd:COG3206 304 RA--QLQQEAQRILASLEAELEAL---QAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLL 371
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
96-537 |
2.96e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 96 YEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISelqwsvmD 175
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVR-------D 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 176 QEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQqikdlEQKLSLQEQDAAIvknmkselvrlPRL 255
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE-----ECRVAAQAHNEEA-----------ESL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 256 ERELKQLREESAHLREMRETnglLQEELEGLQRKLGRQEKMQEtlvglELENErllaklqsWERLDQTMGLSIRTPEDLS 335
Cdd:PRK02224 348 REDADDLEERAEELREEAAE---LESELEEAREAVEDRREEIE-----ELEEE--------IEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 336 RFVVELQQRELALKDKNSAVTSSARGLEKAR---QQLQEELR-QVSGQLLEERKKRETHEALARRLQKrvllLTKERDGM 411
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVeeaEALLEAGKcPECGQPVEGSPHVETIEEDRERVEE----LEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 412 RAILGSYDSELTPAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAeqsf 491
Cdd:PRK02224 488 EEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA---- 563
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 62243374 492 lfsREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ 537
Cdd:PRK02224 564 ---EEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAED 606
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
364-527 |
3.59e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 3.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 364 KARQQLQEELRQVSGQLLEE--------RKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTPAEYS------- 428
Cdd:PHA02562 198 KTYNKNIEEQRKKNGENIARkqnkydelVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKieqfqkv 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 429 ----------PQLTRRMREAEDMVQKVHSHSAEMEAQLSQ---ALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSR 495
Cdd:PHA02562 278 ikmyekggvcPTCTQQISEGPDRITKIKDKLKELQHSLEKldtAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLV 357
|
170 180 190
....*....|....*....|....*....|..
gi 62243374 496 EEADTLRLKVEELEGERSRLEEEKRMLEAQLE 527
Cdd:PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
50-526 |
3.95e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 50 QLEERAEQIRSKSHLIQVE---REKMQMELSH-KRARVELERA-ASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKM 124
Cdd:pfam12128 231 QAIAGIMKIRPEFTKLQQEfntLESAELRLSHlHFGYKSDETLiASRQEERQETSAELNQLLRTLDDQWKEKRDELNGEL 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 125 QEQLERNRQCQQNLDAASKRLREKEDslaqagETINALKGriselqwsvmDQEMrVKRLESEKQELQEQLDLQHKKCQEA 204
Cdd:pfam12128 311 SAADAAVAKDRSELEALEDQHGAFLD------ADIETAAA----------DQEQ-LPSWQSELENLEERLKALTGKHQDV 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 205 NQKIQELQasQEARADHEQQIKDLEQKLSLQEQdaAIVKNMKSELVRLPRLERELKQlrEESAHLREMRETNGLLQEELE 284
Cdd:pfam12128 374 TAKYNRRR--SKIKEQNNRDIAGIKDKLAKIRE--ARDRQLAVAEDDLQALESELRE--QLEAGKLEFNEEEYRLKSRLG 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 285 GLQRKLGRQEKMQETLVGLELENERLlaklqswERLDQTMGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEK 364
Cdd:pfam12128 448 ELKLRLNQATATPELLLQLENFDERI-------ERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 365 ARQQLQEELRQVSGQLLEERKKRET--HEALARRLQKRVLL-------LTKERDGMRAILGSYDSELTP------AEYSP 429
Cdd:pfam12128 521 ALDELELQLFPQAGTLLHFLRKEAPdwEQSIGKVISPELLHrtdldpeVWDGSVGGELNLYGVKLDLKRidvpewAASEE 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 430 QLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKqradmLEMELKMLKSQSSSAEQSFLFSREEADTLRLKvEELE 509
Cdd:pfam12128 601 ELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKAS-----REETFARTALKNARLDLRRLFDEKQSEKDKKN-KALA 674
|
490
....*....|....*..
gi 62243374 510 GERSRLEEEKRMLEAQL 526
Cdd:pfam12128 675 ERKDSANERLNSLEAQL 691
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
41-352 |
4.58e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.91 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 41 LQMQYQQSMQleeRAEQIRSKSHLIQVEREkMQMELSHKRARVELERAASTSARNYEREVDR---------NQELLTRIR 111
Cdd:COG5022 760 LRRRYLQALK---RIKKIQVIQHGFRLRRL-VDYELKWRLFIKLQPLLSLLGSRKEYRSYLAciiklqktiKREKKLRET 835
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 112 QLQEREAGAEE------------KMQEQLERN---RQCQQNLDAASKRLREKEDslaqAGETINALKGRISELQWSVMDQ 176
Cdd:COG5022 836 EEVEFSLKAEVliqkfgrslkakKRFSLLKKEtiyLQSAQRVELAERQLQELKI----DVKSISSLKLVNLELESEIIEL 911
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 177 EMRVKRLESEKQELQEQLDLQHKKcqeANQKIQ--ELQASQEARADHEQQIKDLEQKL-SLQEQDAAIVKNMKSELVRLP 253
Cdd:COG5022 912 KKSLSSDLIENLEFKTELIARLKK---LLNNIDleEGPSIEYVKLPELNKLHEVESKLkETSEEYEDLLKKSTILVREGN 988
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 254 RLERELKQLREEsahLREMRETNGLLQEELEGLQrklgrqekmqetlvglelENERLLAKLQSWERLDQTMG--LSIRTP 331
Cdd:COG5022 989 KANSELKNFKKE---LAELSKQYGALQESTKQLK------------------ELPVEVAELQSASKIISSESteLSILKP 1047
|
330 340
....*....|....*....|.
gi 62243374 332 EDLSRFVVELQQRELALKDKN 352
Cdd:COG5022 1048 LQKLKGLLLLENNQLQARYKA 1068
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
44-287 |
4.95e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 4.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 44 QYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHK-----RARVELERAASTsARNYEREVDRNQELLTRIRQLQEREA 118
Cdd:COG3096 414 QYQQAVQALEKARALCGLPDLTPENAEDYLAAFRAKeqqatEEVLELEQKLSV-ADAARRQFEKAYELVCKIAGEVERSQ 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 119 gAEEKMQEQLERNR----------QCQQNLDAASKRLREKEDSLAQAGETINALKGRIS---ELQWSVMDQEMRVKRLES 185
Cdd:COG3096 493 -AWQTARELLRRYRsqqalaqrlqQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDaaeELEELLAELEAQLEELEE 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 186 EKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVrlpRLERELKQLREE 265
Cdd:COG3096 572 QAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLL---EREREATVERDE 648
|
250 260
....*....|....*....|..
gi 62243374 266 SAHLREmretngLLQEELEGLQ 287
Cdd:COG3096 649 LAARKQ------ALESQIERLS 664
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
94-407 |
5.32e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 5.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 94 RNYEREVDRNQELLTRI-RQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLaqagETINALKGRISELQWS 172
Cdd:TIGR04523 324 EEIQNQISQNNKIISQLnEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYK----QEIKNLESQINDLESK 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 173 VMDQE-------MRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQasqEARADHEQQIKDLEQKL-SLQEQDAAIVKN 244
Cdd:TIGR04523 400 IQNQEklnqqkdEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT---NQDSVKELIIKNLDNTReSLETQLKVLSRS 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 245 MKSELVRLPRLERELKQLREEsahLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQS-WERLDQT 323
Cdd:TIGR04523 477 INKIKQNLEQKQKELKSKEKE---LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDeLNKDDFE 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 324 MglsirTPEDLSRFVVELQQRELALKDKNSAvtssargLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLL 403
Cdd:TIGR04523 554 L-----KKENLEKEIDEKNKEIEELKQTQKS-------LKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEK 621
|
....
gi 62243374 404 LTKE 407
Cdd:TIGR04523 622 AKKE 625
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
51-646 |
1.27e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 51 LEERAEQIRSKSHLIQVEREKMQMELSHKRARV-ELERAASTSARNYEREVDRNQ--------ELLTRIRQLQEREAGAE 121
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLeEIEQLLEELNKKIKDLGEEEQlrvkekigELEAEIASLERSIAEKE 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 122 EKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKC 201
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 202 QEANQKIQELQASQ-----------EARADHEQQIKDLEQKLslqeqdAAIVKNMKSELVRLPRLERELKQLRE----ES 266
Cdd:TIGR02169 395 EKLKREINELKRELdrlqeelqrlsEELADLNAAIAGIEAKI------NELEEEKEDKALEIKKQEWKLEQLAAdlskYE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 267 AHLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSweRLDQTMGLSIRTPEDLSRFVVELQ---- 342
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA--SIQGVHGTVAQLGSVGERYATAIEvaag 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 343 QRELALKDKNSAVTSSARGLEKARQ----------QLQEELRQVSGQLLE------------ERKKR------------- 387
Cdd:TIGR02169 547 NRLNNVVVEDDAVAKEAIELLKRRKagratflplnKMRDERRDLSILSEDgvigfavdlvefDPKYEpafkyvfgdtlvv 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 388 ETHEAlARRLQKRVLLLTKERDGMR---AILGSYDSELTPAEYSPQLTRRMREAEDMVQkvhshsaEMEAQLSQALEELG 464
Cdd:TIGR02169 627 EDIEA-ARRLMGKYRMVTLEGELFEksgAMTGGSRAPRGGILFSRSEPAELQRLRERLE-------GLKRELSSLQSELR 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 465 GQKQRADMLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERraLQGDYDQSRTKVLH 544
Cdd:TIGR02169 699 RIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE--LEARIEELEEDLHK 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 545 MSLNPTSVARQRLREDHSQLQAECERLRGLLRAMErggTVPADLEAAAASLPSSKEVAELK---KQVESAELKNQR---- 617
Cdd:TIGR02169 777 LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIE---ARLREIEQKLNRLTLEKEYLEKEiqeLQEQRIDLKEQIksie 853
|
650 660 670
....*....|....*....|....*....|....*..
gi 62243374 618 --------LKEVFQTKIQEFRKACYTLTGYQIDITTE 646
Cdd:TIGR02169 854 keienlngKKEELEEELEELEAALRDLESRLGDLKKE 890
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
124-414 |
1.49e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 124 MQEQLERNR-QCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEqldlqhkKCQ 202
Cdd:pfam12128 598 SEEELRERLdKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKD-------KKN 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 203 EANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNmkselvRLPRLERELKQLREESAHLREMRETNGLLQEE 282
Cdd:pfam12128 671 KALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREA------RTEKQAYWQVVEGALDAQLALLKAAIAARRSG 744
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 283 LEGLQRKLgrQEKMQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQRELALKDKNSA-VTSSARG 361
Cdd:pfam12128 745 AKAELKAL--ETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATqLSNIERA 822
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 62243374 362 LEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKrvlLLTKERDGMRAI 414
Cdd:pfam12128 823 ISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSE---NLRGLRCEMSKL 872
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
104-271 |
1.55e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 104 QELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQwsvmDQEMRVKRL 183
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE----EQLGNVRNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 184 EsEKQELQEQLDLQHKKCQEANQKIQELqasQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSElvRLPRLERELKQLR 263
Cdd:COG1579 89 K-EYEALQKEIESLKRRISDLEDEILEL---MERIEELEEELAELEAELAELEAELEEKKAELDE--ELAELEAELEELE 162
|
....*...
gi 62243374 264 EESAHLRE 271
Cdd:COG1579 163 AEREELAA 170
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
138-296 |
1.60e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 138 LDAASKRLREKEDSLAQAGETINAlkGRISELQWSVMDQEMRVKRLESEKQELQEQLdlqhkkcqeanqkiqelqasqea 217
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEE--RELTEEEEEIRRLEEQVERLEAEVEELEAEL----------------------- 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 218 rADHEQQIKDLEQKLSL--QEQDAAIVKNMKselvrLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQEK 295
Cdd:COG2433 437 -EEKDERIERLERELSEarSEERREIRKDRE-----ISRLDREIERLERELEEERERIEELKRKLERLKELWKLEHSGEL 510
|
.
gi 62243374 296 M 296
Cdd:COG2433 511 V 511
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
36-521 |
1.94e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 36 SAPGSLQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELeRAASTSARNYEREVDRNQELLTRIRQLqe 115
Cdd:TIGR00618 216 TYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQL-RARIEELRAQEAVLEETQERINRARKA-- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 116 reagaeEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLD 195
Cdd:TIGR00618 293 ------APLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATS 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 196 LQHKKCQEANQKiQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSElvRLPRLERELKQLREESAHLREMRET 275
Cdd:TIGR00618 367 IREISCQQHTLT-QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA--FRDLQGQLAHAKKQQELQQRYAELC 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 276 NGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQ---QRELALKDKN 352
Cdd:TIGR00618 444 AAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCihpNPARQDIDNP 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 353 SAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILgsyDSELTPAEYSPQLT 432
Cdd:TIGR00618 524 GPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDI---PNLQNITVRLQDLT 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 433 RRMREAEDMVqKVHSHSAEMEAQLSQALEELGGQKQRadmLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGER 512
Cdd:TIGR00618 601 EKLSEAEDML-ACEQHALLRKLQPEQDLQDVRLHLQQ---CSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLA 676
|
....*....
gi 62243374 513 SRLEEEKRM 521
Cdd:TIGR00618 677 SRQLALQKM 685
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
121-579 |
2.08e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 121 EEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRI-SELQWSVMDQEMRVkRLESEKQELQEQLDLQHK 199
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLqAETELCAEAEEMRA-RLAARKQELEEILHELES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 200 KCQEANQKIQELQASqeaRADHEQQIKDLEQKLSLQEQDAAIVKNMKSEL-VRLPRLERELKQLREESAHLREMREtngL 278
Cdd:pfam01576 83 RLEEEEERSQQLQNE---KKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTeAKIKKLEEDILLLEDQNSKLSKERK---L 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 279 LQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQ--------SWERLDQTMGLSIRTPEDLSRFVVELQQRELALKD 350
Cdd:pfam01576 157 LEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEerlkkeekGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 351 KNSA-----VTSSARGLEK--ARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILgsYDSELT 423
Cdd:pfam01576 237 QLAKkeeelQAALARLEEEtaQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTEL--EDTLDT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 424 PAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEElggQKQRADMLEMELKMLKSQSSSAEQSFLFSREEADTLRL 503
Cdd:pfam01576 315 TAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQK---HTQALEELTEQLEQAKRNKANLEKAKQALESENAELQA 391
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62243374 504 KVEELEGERSRLEEEKRMLEAQLERralqgdydqsrtkvLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 579
Cdd:pfam01576 392 ELRTLQQAKQDSEHKRKKLEGQLQE--------------LQARLSESERQRAELAEKLSKLQSELESVSSLLNEAE 453
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
203-542 |
2.60e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 203 EANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEE 282
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 283 LEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWErldqtmGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGL 362
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEEL------KLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 363 EKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTPAEYSPQLTRRMREAEDMV 442
Cdd:pfam02463 327 EKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 443 QKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRML 522
Cdd:pfam02463 407 AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQL 486
|
330 340
....*....|....*....|
gi 62243374 523 EAQLERRALQGDYDQSRTKV 542
Cdd:pfam02463 487 ELLLSRQKLEERSQKESKAR 506
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
39-308 |
2.61e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 39 GSLQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQERea 118
Cdd:COG5022 892 KSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKET-- 969
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 119 gaeekmqeqlernrqcQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQH 198
Cdd:COG5022 970 ----------------SEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASK 1033
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 199 KKCQEANQKiQELQASQEARADHEQQIKDLEQK---LSLQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRET 275
Cdd:COG5022 1034 IISSESTEL-SILKPLQKLKGLLLLENNQLQARykaLKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPA 1112
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 62243374 276 N------------GLLQEELEGLQRKLGRQEKMQETLVGLELENE 308
Cdd:COG5022 1113 NvlqfivaqmiklNLLQEISKFLSQLVNTLEPVFQKLSVLQLELD 1157
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
46-218 |
2.64e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 46 QQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARNYEREVDRN---QELLTRIRQLQEREAGAEE 122
Cdd:COG3206 205 NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpviQQLRAQLAELEAELAELSA 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 123 KMQEQLERNRQCQQNLDAASKRLR-EKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRL---ESEKQELQEQLDLQH 198
Cdd:COG3206 285 RYTPNHPDVIALRAQIAALRAQLQqEAQRILASLEAELEALQAREASLQAQLAQLEARLAELpelEAELRRLEREVEVAR 364
|
170 180
....*....|....*....|
gi 62243374 199 KKCQEANQKIQELQASQEAR 218
Cdd:COG3206 365 ELYESLLQRLEEARLAEALT 384
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
75-417 |
2.71e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 75 ELSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQ 154
Cdd:COG4372 12 RLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 155 AG-------ETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKD 227
Cdd:COG4372 92 AQaelaqaqEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQ 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 228 LEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELEN 307
Cdd:COG4372 172 ELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEEL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 308 ERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKR 387
Cdd:COG4372 252 LEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
330 340 350
....*....|....*....|....*....|
gi 62243374 388 ETHEALARRLQKRVLLLTKERDGMRAILGS 417
Cdd:COG4372 332 LAILLAELADLLQLLLVGLLDNDVLELLSK 361
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
42-574 |
2.91e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 42 QMQYQQSMQLEERAEQIRSKshLIQVEREKMQMELSHKRARVELERAASTSARnYEREVDRNQELLTRIRQLQEREAGAE 121
Cdd:PRK02224 195 QIEEKEEKDLHERLNGLESE--LAELDEEIERYEEQREQARETRDEADEVLEE-HEERREELETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 122 EKMQEQLERNRQCQqnlDAASKRLREKEDSLAQAG----------ETINALKGRISELQWSVMDQEM------------- 178
Cdd:PRK02224 272 REREELAEEVRDLR---ERLEELEEERDDLLAEAGlddadaeaveARREELEDRDEELRDRLEECRVaaqahneeaeslr 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 179 -RVKRLESEKQELQEQLDLQHKKCQEANQKIQElqaSQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELV-RLPRLE 256
Cdd:PRK02224 349 eDADDLEERAEELREEAAELESELEEAREAVED---RREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELReERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 257 RELKQLREESAHLREMRETNGLLQEE---------------LEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLD 321
Cdd:PRK02224 426 EREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 322 QTMGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKrv 401
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAE-- 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 402 llLTKERDGMRAILGSYDselTPAEYSPQLTRRMREAEDMvqkvhshsAEMEAQLSQALEELGGQKQ--RADMLEMELKM 479
Cdd:PRK02224 584 --LKERIESLERIRTLLA---AIADAEDEIERLREKREAL--------AELNDERRERLAEKRERKRelEAEFDEARIEE 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 480 LKSQSSSAEQSFlfsrEEADTlrlKVEELEGERSRLEEEKRMLEAQLERRAlqgdydqsrtkvlhmslnptsvarqRLRE 559
Cdd:PRK02224 651 AREDKERAEEYL----EQVEE---KLDELREERDDLQAEIGAVENELEELE-------------------------ELRE 698
|
570
....*....|....*
gi 62243374 560 DHSQLQAECERLRGL 574
Cdd:PRK02224 699 RREALENRVEALEAL 713
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
340-580 |
3.52e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 340 ELQQRE--LALKDKNSAVTSSARgLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERD-GMRAILG 416
Cdd:TIGR02169 219 EKREYEgyELLKEKEALERQKEA-IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQlRVKEKIG 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 417 SYDSELTPAEYS-PQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLK-------SQSSSAE 488
Cdd:TIGR02169 298 ELEAEIASLERSiAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKeeledlrAELEEVD 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 489 QSFLFSREEADTLRLKVE-------ELEGERSRLEEEKRMLEAQLE--RRALQGDYD-----QSRTKVLHMSLNPTSVAR 554
Cdd:TIGR02169 378 KEFAETRDELKDYREKLEklkreinELKRELDRLQEELQRLSEELAdlNAAIAGIEAkinelEEEKEDKALEIKKQEWKL 457
|
250 260
....*....|....*....|....*.
gi 62243374 555 QRLREDHSQLQAECERLRGLLRAMER 580
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKEEYDRVEK 483
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
46-520 |
4.52e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 46 QQSMQLEERAEQIRSKSHLIQVEREKMQmELSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAE---E 122
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPerlE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 123 KMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETIN-ALKGRISELQWSVMDQEMRVKRLESEKQELQEQLdlqhkkc 201
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEEL------- 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 202 QEANQKIQELQASQEaRADHEQQIKDLEQKLSLQEQDAAIVKNMKSE------------------LVRLPRLERELKQLR 263
Cdd:COG4717 223 EELEEELEQLENELE-AAALEERLKEARLLLLIAAALLALLGLGGSLlsliltiagvlflvlgllALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 264 EESAHLREMRETNGLLQEELEGLQRKLGrqekmqetlVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQ 343
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALG---------LPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 344 RELalkdknsavtssargLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQkrvllltKERDGMRAILGSYDSELT 423
Cdd:COG4717 373 AAL---------------LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE-------ELLGELEELLEALDEEEL 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 424 PAEYSpQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEElggqkQRADMLEMELKMLKSQSSSAEqsflfsrEEADTLRL 503
Cdd:COG4717 431 EEELE-ELEEELEELEEELEELREELAELEAELEQLEED-----GELAELLQELEELKAELRELA-------EEWAALKL 497
|
490
....*....|....*..
gi 62243374 504 KVEELEGERSRLEEEKR 520
Cdd:COG4717 498 ALELLEEAREEYREERL 514
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
138-261 |
5.14e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 138 LDAASKRLREKEDSLAQAgetINALKGRISEL----QWSVMDQEM----RVKRLESEKQELQEQLDLQHKKCQEANQKIQ 209
Cdd:COG0542 395 IDEAAARVRMEIDSKPEE---LDELERRLEQLeiekEALKKEQDEasfeRLAELRDELAELEEELEALKARWEAEKELIE 471
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62243374 210 ELQASQEARADHEQQIKDLEQKLSLQEQD-----------------AAIV---------KNMKSELVRLPRLERELKQ 261
Cdd:COG0542 472 EIQELKEELEQRYGKIPELEKELAELEEElaelapllreevteediAEVVsrwtgipvgKLLEGEREKLLNLEEELHE 549
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
96-417 |
5.55e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 96 YEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMD 175
Cdd:pfam17380 280 HQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 176 QEM---RVKRLESEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKselvrl 252
Cdd:pfam17380 360 RELeriRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR------ 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 253 prlERELKQLREESAhlremRETNGLLQEELEGLQR-KLGRQEKMQETLVGLELENERLLAKLQSWERldqTMGLSIRTP 331
Cdd:pfam17380 434 ---QREVRRLEEERA-----REMERVRLEEQERQQQvERLRQQEEERKRKKLELEKEKRDRKRAEEQR---RKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 332 EDLSRFVVELQQRELALKDKNSAVTSSARglEKARQQLQEELRQvsGQLLEERKKRETHEALARRLQKRVLLLTKERDGM 411
Cdd:pfam17380 503 ERKQAMIEEERKRKLLEKEMEERQKAIYE--EERRREAEEERRK--QQEMEERRRIQEQMRKATEERSRLEAMEREREMM 578
|
....*.
gi 62243374 412 RAILGS 417
Cdd:pfam17380 579 RQIVES 584
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
50-565 |
6.39e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 50 QLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAA---------STSARNYERE------VDRNQELLTRIRQLQ 114
Cdd:pfam01576 79 ELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAArqklqlekvTTEAKIKKLEedilllEDQNSKLSKERKLLE 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 115 EREAGAEEKMQEQLERNRQCQqnldaaskRLREKEDSlaqageTINALKGRISELQWSVMDQEMRVKRLESEKQELQEQL 194
Cdd:pfam01576 159 ERISEFTSNLAEEEEKAKSLS--------KLKNKHEA------MISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 195 -DLQHKKCQEANQ---KIQELQASQeARADHEQQIKDLEQKL--SLQEQDAAIVKNMKSELVRLPRLERELKQLREESAH 268
Cdd:pfam01576 225 aELQAQIAELRAQlakKEEELQAAL-ARLEEETAQKNNALKKirELEAQISELQEDLESERAARNKAEKQRRDLGEELEA 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 269 LREMRE----TNGLLQE-------ELEGLQRKLGRQEKMQETLVGlELENERLLAKLQSWERLDQTmglsirtpedlSRF 337
Cdd:pfam01576 304 LKTELEdtldTTAAQQElrskreqEVTELKKALEEETRSHEAQLQ-EMRQKHTQALEELTEQLEQA-----------KRN 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 338 VVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGS 417
Cdd:pfam01576 372 KANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNE 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 418 YDSELTP-AEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSRE 496
Cdd:pfam01576 452 AEGKNIKlSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKK 531
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62243374 497 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQ 565
Cdd:pfam01576 532 KLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLE 600
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
97-325 |
7.62e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 7.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 97 EREVDRNQELLTRIRQLQEREAGAEEKmqeqlernrqcQQNLDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQ 176
Cdd:PRK02224 488 EEEVEEVEERLERAEDLVEAEDRIERL-----------EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEK 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 177 EMRVKRLESEKQELQEQLDLQHKKCQEANQKIQEL---QASQEARADHEQQIKDLEQKLS-LQEQDAAIVKNMKSELVRL 252
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSKLAELKERIESLeriRTLLAAIADAEDEIERLREKREaLAELNDERRERLAEKRERK 636
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 253 PRLERELKQLREESAH----------------LREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQS 316
Cdd:PRK02224 637 RELEAEFDEARIEEARedkeraeeyleqveekLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDE 716
|
....*....
gi 62243374 317 WERLDQTMG 325
Cdd:PRK02224 717 AEELESMYG 725
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
50-248 |
7.76e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.38 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 50 QLEERAEQIrskshliqVEREKMQMELSHKRARVELERAASTSARNYEREV-DRNQELltrirqlqereagaeekmQEQL 128
Cdd:PRK12704 35 EAEEEAKRI--------LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELrERRNEL------------------QKLE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 129 ERNRQCQQNLDAASKRLREKEDSLAQagetinalkgriselqwsvmdQEMRVKRLESEKQELQEQLDLQHKKCQEANQKI 208
Cdd:PRK12704 89 KRLLQKEENLDRKLELLEKREEELEK---------------------KEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 62243374 209 QELQAsQEARadhEQQIKDLEQKlsLQEQDAAIVKNMKSE 248
Cdd:PRK12704 148 SGLTA-EEAK---EILLEKVEEE--ARHEAAVLIKEIEEE 181
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
209-314 |
8.45e-03 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 37.99 E-value: 8.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 209 QELQASQEARADHEQQIKDLEQKLS-LQEQDAAIVKNMKSELVRLPRLERELKQLREEsahLREMRETNGLLQEELEGLQ 287
Cdd:pfam08614 64 EELAELYRSRGELAQRLVDLNEELQeLEKKLREDERRLAALEAERAQLEEKLKDREEE---LREKRKLNQDLQDELVALQ 140
|
90 100
....*....|....*....|....*..
gi 62243374 288 RKLGRQEkmqETLVGLELENERLLAKL 314
Cdd:pfam08614 141 LQLNMAE---EKLRKLEKENRELVERW 164
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
85-528 |
8.95e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.56 E-value: 8.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 85 LERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINalkg 164
Cdd:PRK04863 263 ITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN---- 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 165 riseLQWSVMDQEMRVKRLESEKQELQEQLDLQhkkcQEANQKIQELQASQEARADH-EQQIKDLEQKLSLQEQdaaivk 243
Cdd:PRK04863 339 ----LVQTALRQQEKIERYQADLEELEERLEEQ----NEVVEEADEQQEENEARAEAaEEEVDELKSQLADYQQ------ 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 244 nmkselvRLPRLERELKQLREESAHLREMRETNG---LLQEELEGLQRKLGRQEKmQETLVGLELENERLLAKLQSwERL 320
Cdd:PRK04863 405 -------ALDVQQTRAIQYQQAVQALERAKQLCGlpdLTADNAEDWLEEFQAKEQ-EATEELLSLEQKLSVAQAAH-SQF 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 321 DQTMGLSIRTPEDLSRFVVELQQRELALKdknsavTSSARGLEKARQQLQEELRQVSGQLLEERkkreTHEALARRLQKR 400
Cdd:PRK04863 476 EQAYQLVRKIAGEVSRSEAWDVARELLRR------LREQRHLAEQLQQLRMRLSELEQRLRQQQ----RAERLLAEFCKR 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 401 vllltkerdgmrailgsYDSELTPAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEME---- 476
Cdd:PRK04863 546 -----------------LGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAwlaa 608
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 62243374 477 ---LKMLKSQSSSAeqsfLFSREEADTLRL----KVEELEGERSRLEEEKRMLEAQLER 528
Cdd:PRK04863 609 qdaLARLREQSGEE----FEDSQDVTEYMQqlleRERELTVERDELAARKQALDEEIER 663
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
29-240 |
9.26e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 39.40 E-value: 9.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 29 SGLDISTSAPGSLQMQYQQSMQLEERAEQIRSKSHLIQveREKMQMELSHKRARVELERAASTSARNYEREVDRNQELLt 108
Cdd:PRK10246 402 ITLTLTADEVAAALAQHAEQRPLRQRLVALHGQIVPQQ--KRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLA- 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62243374 109 RIRQLQEREAGAE--EKMQEQLERNRQC---------------QQNLDAASKRLREKEDSLAQAGETINALKGRISELQW 171
Cdd:PRK10246 479 DVKTICEQEARIKdlEAQRAQLQAGQPCplcgstshpaveayqALEPGVNQSRLDALEKEVKKLGEEGAALRGQLDALTK 558
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62243374 172 SVMDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAA 240
Cdd:PRK10246 559 QLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQLRLLSQRHELQGQIAA 627
|
|
| |
