NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|54792102|ref|NP_001005915|]
View 

receptor tyrosine-protein kinase erbB-3 isoform s precursor [Homo sapiens]

Protein Classification

receptor L domain-containing protein( domain architecture ID 10470361)

receptor L domain-containing protein may be involved in ligand binding

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 56-140 2.66e-21

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


:

Pssm-ID: 460032  Cd Length: 112  Bit Score: 83.82  E-value: 2.66e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54792102    56 CEVVMGNLEIVLTGHN---ADLSFLQWIREVTGYVLVAM-NEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNtnsshaL 131
Cdd:pfam01030   2 CTVIYGNLEITLIDENndsELLSFLSNVEEITGYLLIANtNLVSLSFLPNLRIIRGRNLFDDNYALYILDNPN------L 75


                  ....*....
gi 54792102   132 RQLRLTQLT 140
Cdd:pfam01030  76 TELGLPSLK 84
 
Name Accession Description Interval E-value
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 56-140 2.66e-21

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 83.82  E-value: 2.66e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54792102    56 CEVVMGNLEIVLTGHN---ADLSFLQWIREVTGYVLVAM-NEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNtnsshaL 131
Cdd:pfam01030   2 CTVIYGNLEITLIDENndsELLSFLSNVEEITGYLLIANtNLVSLSFLPNLRIIRGRNLFDDNYALYILDNPN------L 75


                  ....*....
gi 54792102   132 RQLRLTQLT 140
Cdd:pfam01030  76 TELGLPSLK 84
 
Name Accession Description Interval E-value
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 56-140 2.66e-21

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 83.82  E-value: 2.66e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54792102    56 CEVVMGNLEIVLTGHN---ADLSFLQWIREVTGYVLVAM-NEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNtnsshaL 131
Cdd:pfam01030   2 CTVIYGNLEITLIDENndsELLSFLSNVEEITGYLLIANtNLVSLSFLPNLRIIRGRNLFDDNYALYILDNPN------L 75


                  ....*....
gi 54792102   132 RQLRLTQLT 140
Cdd:pfam01030  76 TELGLPSLK 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH