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Conserved domains on  [gi|52630338|ref|NP_001005290|]
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proline/serine-rich coiled-coil protein 1 isoform b [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GTSE1_N super family cl21116
G-2 and S-phase expressed 1; This family is the N-terminus of GTSE1 proteins. GTSE-1 (G2 and S ...
 8-122 2.91e-11

G-2 and S-phase expressed 1; This family is the N-terminus of GTSE1 proteins. GTSE-1 (G2 and S phase-expressed-1) protein is specifically expressed during S and G2 phases of the cell cycle. It is mainly localized to the microtubules and when overexpressed delays the G2 to M transition. the full protein negatively regulates p53 transactivation function, protein levels, and p53-dependent apoptosis. This domain family is found in eukaryotes, and is approximately 140 amino acids in length. There is a conserved FDFD sequence motif.


The actual alignment was detected with superfamily member pfam15259:

Pssm-ID: 464599 [Multi-domain]  Cd Length: 144  Bit Score: 60.41  E-value: 2.91e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52630338     8 VRFIVDETLDFGgLSPSDSREEEDITVLVTPEKPLRRGLS-----HRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEAN 82
Cdd:pfam15259   1 VLLLADEKFDFD-LSLSPSSANEDDEVFVGPVGHKERCVAasvelNSQIPKQPLLPGSESPTSWSPLTGEKFVEVYKEAH 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52630338    83 RLAAQLEQCALQDRESAGEGLGP----------------------RRVKPSPR---RETFVLKDS 122
Cdd:pfam15259  80 LLALQLESSSKNEAAKAAQPEDPssqgvekfvqdsklklnlfekeKEMEKSPRsikRETYCVQDS 144
 
Name Accession Description Interval E-value
GTSE1_N pfam15259
G-2 and S-phase expressed 1; This family is the N-terminus of GTSE1 proteins. GTSE-1 (G2 and S ...
 8-122 2.91e-11

G-2 and S-phase expressed 1; This family is the N-terminus of GTSE1 proteins. GTSE-1 (G2 and S phase-expressed-1) protein is specifically expressed during S and G2 phases of the cell cycle. It is mainly localized to the microtubules and when overexpressed delays the G2 to M transition. the full protein negatively regulates p53 transactivation function, protein levels, and p53-dependent apoptosis. This domain family is found in eukaryotes, and is approximately 140 amino acids in length. There is a conserved FDFD sequence motif.


Pssm-ID: 464599 [Multi-domain]  Cd Length: 144  Bit Score: 60.41  E-value: 2.91e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52630338     8 VRFIVDETLDFGgLSPSDSREEEDITVLVTPEKPLRRGLS-----HRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEAN 82
Cdd:pfam15259   1 VLLLADEKFDFD-LSLSPSSANEDDEVFVGPVGHKERCVAasvelNSQIPKQPLLPGSESPTSWSPLTGEKFVEVYKEAH 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52630338    83 RLAAQLEQCALQDRESAGEGLGP----------------------RRVKPSPR---RETFVLKDS 122
Cdd:pfam15259  80 LLALQLESSSKNEAAKAAQPEDPssqgvekfvqdsklklnlfekeKEMEKSPRsikRETYCVQDS 144
 
Name Accession Description Interval E-value
GTSE1_N pfam15259
G-2 and S-phase expressed 1; This family is the N-terminus of GTSE1 proteins. GTSE-1 (G2 and S ...
 8-122 2.91e-11

G-2 and S-phase expressed 1; This family is the N-terminus of GTSE1 proteins. GTSE-1 (G2 and S phase-expressed-1) protein is specifically expressed during S and G2 phases of the cell cycle. It is mainly localized to the microtubules and when overexpressed delays the G2 to M transition. the full protein negatively regulates p53 transactivation function, protein levels, and p53-dependent apoptosis. This domain family is found in eukaryotes, and is approximately 140 amino acids in length. There is a conserved FDFD sequence motif.


Pssm-ID: 464599 [Multi-domain]  Cd Length: 144  Bit Score: 60.41  E-value: 2.91e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52630338     8 VRFIVDETLDFGgLSPSDSREEEDITVLVTPEKPLRRGLS-----HRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEAN 82
Cdd:pfam15259   1 VLLLADEKFDFD-LSLSPSSANEDDEVFVGPVGHKERCVAasvelNSQIPKQPLLPGSESPTSWSPLTGEKFVEVYKEAH 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52630338    83 RLAAQLEQCALQDRESAGEGLGP----------------------RRVKPSPR---RETFVLKDS 122
Cdd:pfam15259  80 LLALQLESSSKNEAAKAAQPEDPssqgvekfvqdsklklnlfekeKEMEKSPRsikRETYCVQDS 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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