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Conserved domains on  [gi|992330619|ref|YP_009229152|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Motacilla alba]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 627.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   3 NYPLLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  83 MLALLLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 163 LSGNYTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 243 TLTTILFFNPSLFNLPQELFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 992330619 323 PYL 325
Cdd:MTH00111 321 PQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 627.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   3 NYPLLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  83 MLALLLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 163 LSGNYTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 243 TLTTILFFNPSLFNLPQELFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 992330619 323 PYL 325
Cdd:MTH00111 321 PQL 323
NADHdh pfam00146
NADH dehydrogenase;
12-310 5.27e-117

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 339.45  E-value: 5.27e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   12 MALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLALLLAIS 91
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   92 IWTPLPI--PFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTL 169
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  170 SALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILF 249
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 992330619  250 F---NPSLFNLPqelfPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:pfam00146 241 LggwLGPFPLPG----LLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 5-306 8.04e-109

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 319.77  E-value: 8.04e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   5 PLLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPML 84
Cdd:COG1005    7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  85 ALLLAISIWTPLPI--PFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVL 162
Cdd:COG1005   87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 163 LSGNYTLSALAVTQE-PLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 241
Cdd:COG1005  167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 242 NTLTTILFF---NPSLFNLPQELFP--VVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:COG1005  247 SALATTLFLggwLGPFPILPLGGLPgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 627.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   3 NYPLLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  83 MLALLLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 163 LSGNYTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 243 TLTTILFFNPSLFNLPQELFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 992330619 323 PYL 325
Cdd:MTH00111 321 PQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 520.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   5 PLLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPML 84
Cdd:MTH00071   3 TLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTM 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  85 ALLLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLS 164
Cdd:MTH00071  83 ALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 165 GNYTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTL 244
Cdd:MTH00071 163 GGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTL 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 992330619 245 TTILFFNPSLFNLPQELFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLPP 323
Cdd:MTH00071 243 STILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 6-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 516.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   6 LLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLA 85
Cdd:MTH00134   5 LITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  86 LLLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSG 165
Cdd:MTH00134  85 LTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTG 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 166 NYTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00134 165 GFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLS 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 246 TILFFNPSLFNLPQELFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLPPYL 325
Cdd:MTH00134 245 AILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 10-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 513.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  10 LIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLALLLA 89
Cdd:MTH00104   3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  90 ISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTL 169
Cdd:MTH00104  83 LTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 170 SALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILF 249
Cdd:MTH00104 163 STLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILF 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 992330619 250 FNPSLFNLPQELFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLPPYL 325
Cdd:MTH00104 243 LGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 6-323 3.21e-149

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 421.63  E-value: 3.21e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   6 LLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLA 85
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  86 LLLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSG 165
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 166 NYTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 992330619 246 TILFFNPSLFNLpqelfpvVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLPP 323
Cdd:MTH00218 241 VILFLGTSLTTI-------NLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 7-325 1.21e-142

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 405.51  E-value: 1.21e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   7 LVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLAL 86
Cdd:MTH00040   4 ILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  87 LLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGN 166
Cdd:MTH00040  84 FLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 167 YTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00040 164 FSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSV 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 247 ILFFN-PSLFNLPQELFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLPPYL 325
Cdd:MTH00040 244 ILFLGgGSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 6-320 6.17e-119

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 344.80  E-value: 6.17e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   6 LLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLA 85
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  86 LLLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSG 165
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 166 NYTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00195 161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 992330619 246 TILFFNPSLfnlpqelfPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAG 320
Cdd:MTH00195 241 TILFLGGGG--------TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 7-307 4.33e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 342.62  E-value: 4.33e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   7 LVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLAL 86
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  87 LLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGN 166
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 167 YTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00143 161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 992330619 247 ILFF-NPSLFNLpqeLFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAL 307
Cdd:MTH00143 241 VLFFgGSSVLFL---LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
NADHdh pfam00146
NADH dehydrogenase;
12-310 5.27e-117

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 339.45  E-value: 5.27e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   12 MALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLALLLAIS 91
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   92 IWTPLPI--PFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTL 169
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  170 SALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILF 249
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 992330619  250 F---NPSLFNLPqelfPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:pfam00146 241 LggwLGPFPLPG----LLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-318 2.26e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 338.28  E-value: 2.26e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   6 LLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLA 85
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  86 LLLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSG 165
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 166 NYTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 992330619 246 TILFFNPSLFNLpqeLFPVvlatKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICY 318
Cdd:MTH00193 241 VLMFLGGDLLSL---LFYL----KLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 20-313 7.31e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 321.60  E-value: 7.31e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  20 ILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLALLLAISIWTPLPIP 99
Cdd:MTH00225  14 LLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSM 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 100 FSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLSALAVTQEPL 179
Cdd:MTH00225  94 FSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYF 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 180 YLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFFnPSLFNlpq 259
Cdd:MTH00225 174 WFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFF-GGFFV--- 249

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 992330619 260 eLFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTS 313
Cdd:MTH00225 250 -TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 10-324 3.16e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 320.91  E-value: 3.16e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  10 LIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLALLLA 89
Cdd:MTH00054   5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  90 ISIWTPLPI--PFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNY 167
Cdd:MTH00054  85 FIAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 168 TLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTI 247
Cdd:MTH00054 165 NLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 248 LFFNPSLFNLPQELFP---VVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLPPY 324
Cdd:MTH00054 245 LFLGGWLVISGPTSYFsnfVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPPF 324
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 5-306 8.04e-109

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 319.77  E-value: 8.04e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   5 PLLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPML 84
Cdd:COG1005    7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  85 ALLLAISIWTPLPI--PFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVL 162
Cdd:COG1005   87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 163 LSGNYTLSALAVTQE-PLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 241
Cdd:COG1005  167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 242 NTLTTILFF---NPSLFNLPQELFP--VVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:COG1005  247 SALATTLFLggwLGPFPILPLGGLPgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 10-323 1.13e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 311.67  E-value: 1.13e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  10 LIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLALLLA 89
Cdd:MTH00216   9 LIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  90 ISIW--TPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNY 167
Cdd:MTH00216  89 LIVWgvIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSL 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 168 TLSALAVTQEP-LYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00216 169 SITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTT 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 992330619 247 ILFFNPSLfNLPQELF--PVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAGLPP 323
Cdd:MTH00216 249 ILFLGGWL-SPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
5-310 1.09e-102

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 304.04  E-value: 1.09e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   5 PLLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPML 84
Cdd:PRK06076   8 LLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  85 ALLLAISIWTPLPI--PFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVL 162
Cdd:PRK06076  88 AFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 163 LSGNYTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:PRK06076 168 LAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVS 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 992330619 243 TLTTILFF---NPSLFNLPQELFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:PRK06076 248 ALITTLFLggwLPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-323 4.93e-91

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 275.36  E-value: 4.93e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   1 MTNYPLLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIT 80
Cdd:MTH00029   1 MTIYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  81 TPMLALLLAISIWTPLPIP--FSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:MTH00029  81 APIISFTLAILAWAIVTMDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIII 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 159 SVVLLSGNYTLSALAVTQEPLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:MTH00029 161 SVILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 239 MLMNTLTTILFFN------------PSLFNLPQELFPVVLA----TKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLP 302
Cdd:MTH00029 241 ILMSCMMTIFFLGgwlspldgiptpPEAFSIFEQIASSKSSfwffTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLP 320

                        330       340
                 ....*....|....*....|.
gi 992330619 303 LTLALCLWHTSMPICYAGLPP 323
Cdd:MTH00029 321 LSLGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 6-309 1.21e-85

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 260.10  E-value: 1.21e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   6 LLVNLIMALsyalpilIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLA 85
Cdd:MTH00010   9 ILLSYVMAL-------LAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  86 LLLAISIWTPLPIPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSG 165
Cdd:MTH00010  82 LILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQ 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 166 NYTLSALAVTQEPLYLIFACwPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00010 162 TFSFSKIIMSQYSWILLMII-PLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFT 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 992330619 246 TILF--FNPSLFnlpqeLFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCL 309
Cdd:MTH00010 241 SVFFtsFIPSIF-----ISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 20-305 1.29e-65

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 207.83  E-value: 1.29e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  20 ILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLALLLAISIWTPLPIP 99
Cdd:MTH00090   9 ILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYF 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 100 FSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTL-SALAVTQEP 178
Cdd:MTH00090  89 FDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFvSSFSLSLFV 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 179 LYLIFacwplammwYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFFNPSLFNLp 258
Cdd:MTH00090 169 IYLPF---------LIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLML- 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 992330619 259 qelfpvvlatkvLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTL 305
Cdd:MTH00090 239 ------------FLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 4-313 2.86e-54

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 181.30  E-value: 2.86e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   4 YPLLVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPM 83
Cdd:CHL00032  24 YGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPS 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  84 LALllaISIW-TPLPIPFS----LADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:CHL00032 104 IAV---ISILlSYLVIPFGyhlvLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 159 SVVLLSGnyTLSALAVTQEPLYLIFACWPL------AMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFL 232
Cdd:CHL00032 181 SISLLSN--SLSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYV 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 233 AEYANIMLMNTLTTILF-----------FNPSLF--NLPQELFPVVLATKVLLLSAG-FLWI----RASYPRFRYDQLMH 294
Cdd:CHL00032 259 ASYLNLLVSSLFVTVLYlggwnlsipyiFIPELFeiNKTGGVFGTTIGIFITLAKTYlFLFIsittRWTLPRLRMDQLLN 338

                        330
                 ....*....|....*....
gi 992330619 295 LLWKNFLPLTLALCLWHTS 313
Cdd:CHL00032 339 LGWKFLLPISLGNLLLTTS 357
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 18-305 4.18e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 165.87  E-value: 4.18e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  18 LPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFITTPMLALLLAISIWTPLP 97
Cdd:MTH00058  12 LIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  98 IPFSLADLNLGILFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLSALAVTQE 177
Cdd:MTH00058  92 SYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGW 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 178 PLYLIFacWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFFNPSLFNL 257
Cdd:MTH00058 172 LSVLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFVSI 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 992330619 258 pqelfpVVLATKVLllsagFLWIRASYPRFRYDQLMHLLWKNFLPLTL 305
Cdd:MTH00058 250 ------MLLFHLLF-----FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
7-310 1.77e-35

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 130.30  E-value: 1.77e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619   7 LVNLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPnivgpfGLLQPLADGIKLFIKEPIRPSTSSPILFIT-----T 81
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLFRAApyvalA 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619  82 PMLALLLAISIWTPLPIPFSLADLnLGILFLLAMSSLAvysILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVV 161
Cdd:COG0650   75 AMLLAALLVPVLTTGPPLSFSGDL-IVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992330619 162 LLSGNYTLSALAVTQE---PLYLIFACWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:COG0650  151 LLAGSTSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKL 230

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 992330619 239 MLMNTLTTILFFnPSLFNLPQELFPVVLATKVLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:COG0650  231 FVLLSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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