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Conserved domains on  [gi|985679437|gb|KXB09322|]
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hypothetical protein AKJ60_00475 [candidate division MSBL1 archaeon SCGC-AAA385M11]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glycosyltransferase_GTB-type super family cl10013
glycosyltransferase family 1 and related proteins with GTB topology; Glycosyltransferases ...
2-50 1.22e-07

glycosyltransferase family 1 and related proteins with GTB topology; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.


The actual alignment was detected with superfamily member cd03825:

Pssm-ID: 471961 [Multi-domain]  Cd Length: 364  Bit Score: 47.33  E-value: 1.22e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 985679437   2 LGIDQDRPVVLVGAQYMDSFYKGFADYLQALEYLD--SDVFLLFFGKLDQK 50
Cdd:cd03825  187 LGIPQDKKVILFGAESVTKPRKGFDELIEALKLLAtkDDLLLVVFGKNDPQ 237
 
Name Accession Description Interval E-value
GT4_WcaC-like cd03825
putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins; This family ...
2-50 1.22e-07

putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins; This family is most closely related to the GT4 family of glycosyltransferases. Escherichia coli WcaC has been predicted to function in colanic acid biosynthesis. WcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.


Pssm-ID: 340851 [Multi-domain]  Cd Length: 364  Bit Score: 47.33  E-value: 1.22e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 985679437   2 LGIDQDRPVVLVGAQYMDSFYKGFADYLQALEYLD--SDVFLLFFGKLDQK 50
Cdd:cd03825  187 LGIPQDKKVILFGAESVTKPRKGFDELIEALKLLAtkDDLLLVVFGKNDPQ 237
 
Name Accession Description Interval E-value
GT4_WcaC-like cd03825
putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins; This family ...
2-50 1.22e-07

putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins; This family is most closely related to the GT4 family of glycosyltransferases. Escherichia coli WcaC has been predicted to function in colanic acid biosynthesis. WcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.


Pssm-ID: 340851 [Multi-domain]  Cd Length: 364  Bit Score: 47.33  E-value: 1.22e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 985679437   2 LGIDQDRPVVLVGAQYMDSFYKGFADYLQALEYLD--SDVFLLFFGKLDQK 50
Cdd:cd03825  187 LGIPQDKKVILFGAESVTKPRKGFDELIEALKLLAtkDDLLLVVFGKNDPQ 237
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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