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Conserved domains on  [gi|985671553|gb|KXB02352|]
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hypothetical protein AKJ44_00750 [candidate division MSBL1 archaeon SCGC-AAA261F17]

Protein Classification

ABC transporter permease( domain architecture ID 11426120)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-245 1.65e-72

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 222.32  E-value: 1.65e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   1 MGVILLILFFFFVGLIVVTFLYT---GGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVI 77
Cdd:COG0555   13 LGLTLLYLSLIVLLPLAALVLKAaglGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLV 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  78 DSTLNLPIVLPPVAVGAILLIFFTTPP--GATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVART 155
Cdd:COG0555   93 DALVDLPFALPTAVAGIALLLLFGPNGwlGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAAT 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 156 LGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATRMKTETMPISIFLNMAEADVAQVAALILITIGIS 235
Cdd:COG0555  173 LGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLLLIS 252

                        250
                 ....*....|
gi 985671553 236 ISVLYVTKKV 245
Cdd:COG0555  253 FLLLLLINLL 262
 
Name Accession Description Interval E-value
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-245 1.65e-72

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 222.32  E-value: 1.65e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   1 MGVILLILFFFFVGLIVVTFLYT---GGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVI 77
Cdd:COG0555   13 LGLTLLYLSLIVLLPLAALVLKAaglGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLV 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  78 DSTLNLPIVLPPVAVGAILLIFFTTPP--GATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVART 155
Cdd:COG0555   93 DALVDLPFALPTAVAGIALLLLFGPNGwlGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAAT 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 156 LGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATRMKTETMPISIFLNMAEADVAQVAALILITIGIS 235
Cdd:COG0555  173 LGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLLLIS 252

                        250
                 ....*....|
gi 985671553 236 ISVLYVTKKV 245
Cdd:COG0555  253 FLLLLLINLL 262
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 22-241 1.72e-55

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 177.59  E-value: 1.72e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   22 YTGGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFF- 100
Cdd:TIGR01581   4 RLGGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFg 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  101 -TTPPGATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAA 179
Cdd:TIGR01581  84 rNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAG 163

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 985671553  180 GVLAWARAIGEFGATVMLAGATRMKTETMPISIFLNMAEADVAQVAALILITIGISISVLYV 241
Cdd:TIGR01581 164 LVLAWARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLLLV 225
tungstate_WtpB NF040839
tungstate ABC transporter permease WtpB;
3-248 3.69e-34

tungstate ABC transporter permease WtpB;


Pssm-ID: 468778  Cd Length: 250  Bit Score: 123.20  E-value: 3.69e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   3 VILLILFFFFVGL-IVVTFLYTGGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTL 81
Cdd:NF040839   7 AILGSFLVLFILLpIITMLLNQDPGDLSKALHDPEVIKSLLVSLYAALIATLIALIFGVPLGYILARKDFKGKSFVEAII 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  82 NLPIVLPPVAVGAILLIFFTTPPGATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKF 161
Cdd:NF040839  87 DIPIVIPHSVVGIMLLVVFYGTGIGGASKIGLKIVDNFWGIVVAMLFVSAPFMINSARDGFLSVDEELEHVARTLGASKL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 162 QTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAgatrMKTETMPISIFLNMAEADVAQVAALILITIGISISVLYV 241
Cdd:NF040839 167 RTFFTISLPLAKRSIVSGAIMTWARGISEVGAILIVA----YYPKTAPVLIYERFNNFGLSASKPIAVILILISLALFVI 242


                 ....*..
gi 985671553 242 TKKVIGG 248
Cdd:NF040839 243 LRLLIGR 249
modB PRK09421
molybdate ABC transporter permease subunit;
34-239 2.49e-33

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 120.41  E-value: 2.49e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  34 SEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFTT--PPGATVESV 111
Cdd:PRK09421   4 SDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRrgFIGQWLYEW 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 112 F-VRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGE 190
Cdd:PRK09421  84 FgISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGE 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 985671553 191 FGATVMLAGATRMKTETMPISI--FLNMAEADvAQVAALILITIGISISVL 239
Cdd:PRK09421 164 FGATITFVSNIPGETQTIPSAMytLIQTPGGE-SAAARLCIISIAIALASL 213
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 41-236 9.76e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.39  E-value: 9.76e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  41 IKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFttppgATVESVFVRFTYAVP 120
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF-----GVLLGWGILPGLGLP 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 121 GIILAqFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGA 200
Cdd:cd06261   76 ALILA-LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 985671553 201 TRMKTETMPISIFLNMAEADVAQVAALILITIGISI 236
Cdd:cd06261  155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 44-230 1.38e-14

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 69.88  E-value: 1.38e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  44 SLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFTT--PPGatvesvFVRFTYAVPG 121
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRsgPLG------FLGLLYTPTA 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 122 IILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVtLPMCKKAIIAAGVLAWARAIGEFGATVMLAGAT 201
Cdd:NF038017  75 MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGNI 153

                        170       180       190
                 ....*....|....*....|....*....|.
gi 985671553 202 RMKTETMPISIFL--NMAEADVAQVAALILI 230
Cdd:NF038017 154 RGYTRVLTTAIVLetSKGNFDLALALGIILL 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 68-242 7.43e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 42.29  E-value: 7.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   68 KFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFttppgatvesVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDS 147
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  148 EYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATRMKTETMPISIFLNMAEADVAQVAAL 227
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160

                         170
                  ....*....|....*
gi 985671553  228 ILITIGISISVLYVT 242
Cdd:pfam00528 161 LILLLLNLLVDILQR 175
 
Name Accession Description Interval E-value
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-245 1.65e-72

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 222.32  E-value: 1.65e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   1 MGVILLILFFFFVGLIVVTFLYT---GGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVI 77
Cdd:COG0555   13 LGLTLLYLSLIVLLPLAALVLKAaglGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLV 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  78 DSTLNLPIVLPPVAVGAILLIFFTTPP--GATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVART 155
Cdd:COG0555   93 DALVDLPFALPTAVAGIALLLLFGPNGwlGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAAT 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 156 LGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATRMKTETMPISIFLNMAEADVAQVAALILITIGIS 235
Cdd:COG0555  173 LGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLLLIS 252

                        250
                 ....*....|
gi 985671553 236 ISVLYVTKKV 245
Cdd:COG0555  253 FLLLLLINLL 262
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 34-250 2.97e-63

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 197.19  E-value: 2.97e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  34 SEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFF--TTPPGATVESV 111
Cdd:COG4149    2 SPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFgrNGPLGQLLEEL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 112 F-VRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGE 190
Cdd:COG4149   82 FgISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGE 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 191 FGATVMLAGATRMKTETMPISIFLNMAEADVAQVAALILITIGISISVLYVTKKVIGGFR 250
Cdd:COG4149  162 FGATLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRRR 221
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 22-241 1.72e-55

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 177.59  E-value: 1.72e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   22 YTGGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFF- 100
Cdd:TIGR01581   4 RLGGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFg 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  101 -TTPPGATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAA 179
Cdd:TIGR01581  84 rNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAG 163

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 985671553  180 GVLAWARAIGEFGATVMLAGATRMKTETMPISIFLNMAEADVAQVAALILITIGISISVLYV 241
Cdd:TIGR01581 164 LVLAWARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLLLV 225
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 43-239 8.70e-46

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 152.01  E-value: 8.70e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   43 LSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFF--TTPPGATVESVFVRFTYAVP 120
Cdd:TIGR02141   2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFgpNGPIGKLLELFGISLVFTFT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  121 GIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGA 200
Cdd:TIGR02141  82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGN 161

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 985671553  201 TRMKTETMPISIFlNMAEADVAQVAALILITIGISISVL 239
Cdd:TIGR02141 162 IPGETQTIPLAIY-DAVESDYELAHQLSLVLLAISLIVL 199
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 1-247 2.04e-37

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 132.16  E-value: 2.04e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   1 MGVILLILFFFFVGLIVVTFLYT-GGGEIIS-------------ALSSEETLFAIKLSLLTATITTIISVLVAIPAAYAL 66
Cdd:COG1177    9 LRLFLALVLLFLYLPILVLVLYSfNDSWFLTfppegftlrwyaeLFSDPRLLDALLNSLLIALLSTLLATVLGTPAALAL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  67 SKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFttppgatvesVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFD 146
Cdd:COG1177   89 ARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLF----------SALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 147 SEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATrmkTETMPISIFLNMAEADVAQVAA 226
Cdd:COG1177  159 PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPG---VTTLPVYIYSMIRRGISPEINA 235

                        250       260
                 ....*....|....*....|.
gi 985671553 227 LILITIGISISVLYVTKKVIG 247
Cdd:COG1177  236 LSTLLILLSLLLLLLAERLRR 256
tungstate_WtpB NF040839
tungstate ABC transporter permease WtpB;
3-248 3.69e-34

tungstate ABC transporter permease WtpB;


Pssm-ID: 468778  Cd Length: 250  Bit Score: 123.20  E-value: 3.69e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   3 VILLILFFFFVGL-IVVTFLYTGGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTL 81
Cdd:NF040839   7 AILGSFLVLFILLpIITMLLNQDPGDLSKALHDPEVIKSLLVSLYAALIATLIALIFGVPLGYILARKDFKGKSFVEAII 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  82 NLPIVLPPVAVGAILLIFFTTPPGATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKF 161
Cdd:NF040839  87 DIPIVIPHSVVGIMLLVVFYGTGIGGASKIGLKIVDNFWGIVVAMLFVSAPFMINSARDGFLSVDEELEHVARTLGASKL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 162 QTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAgatrMKTETMPISIFLNMAEADVAQVAALILITIGISISVLYV 241
Cdd:NF040839 167 RTFFTISLPLAKRSIVSGAIMTWARGISEVGAILIVA----YYPKTAPVLIYERFNNFGLSASKPIAVILILISLALFVI 242


                 ....*..
gi 985671553 242 TKKVIGG 248
Cdd:NF040839 243 LRLLIGR 249
modB PRK09421
molybdate ABC transporter permease subunit;
34-239 2.49e-33

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 120.41  E-value: 2.49e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  34 SEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFTT--PPGATVESV 111
Cdd:PRK09421   4 SDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRrgFIGQWLYEW 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 112 F-VRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGE 190
Cdd:PRK09421  84 FgISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGE 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 985671553 191 FGATVMLAGATRMKTETMPISI--FLNMAEADvAQVAALILITIGISISVL 239
Cdd:PRK09421 164 FGATITFVSNIPGETQTIPSAMytLIQTPGGE-SAAARLCIISIAIALASL 213
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
3-247 1.37e-31

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 121.42  E-value: 1.37e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   3 VILLILFFFFVGLIVVTFLYTGGGEIIS----------ALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFP 72
Cdd:COG1178  292 ALCLLLVLLGLLLPLLALLLWSLTKALDdnltldnyrfVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGR 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  73 GEDVIDSTLNLPIVLPPVAVGAILLIFFTTPPGatvesvfVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENV 152
Cdd:COG1178  372 LARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLP-------LLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEA 444

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 153 ARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGAtrmKTETMPISIFLNMAEADVAQVAALILITI 232
Cdd:COG1178  445 ARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPP---GFETLAVLIYQLASSGRYGEAAALALLLV 521

                        250
                 ....*....|....*
gi 985671553 233 GISISVLYVTKKVIG 247
Cdd:COG1178  522 LVSLLPVLLLERLLG 536
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 1-241 1.73e-30

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 114.37  E-value: 1.73e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553    1 MGVILLILFFFFVGLIVVTFlYTGGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDST 80
Cdd:TIGR00969  23 LLYVFLILILPVAALFVQAF-SKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDAL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   81 LNLPIVLPPVAVGAILLIFF--TTPPGATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGY 158
Cdd:TIGR00969 102 IDLPFALSPVVAGLTLALLYgsNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGA 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  159 NKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATRMKTETMPISIFLNMAEADVAQVAALILITIGISISV 238
Cdd:TIGR00969 182 SGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLVSLVT 261


                  ...
gi 985671553  239 LYV 241
Cdd:TIGR00969 262 LFL 264
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
3-250 9.13e-26

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 105.24  E-value: 9.13e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   3 VILLILFFFFVGLIVVTFLYTGGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLN 82
Cdd:COG1178   18 LLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  83 LPIVLPPVAVGAILLIFFttPPGATVESVFVRFT-------YAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVART 155
Cdd:COG1178   98 LPLALPPYVVALAWIALF--GPNGLLNTLLRALFgleppdiYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARS 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 156 LGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGatrmKTETMPISIFLNM-AEADVAQVAALILITIGI 234
Cdd:COG1178  176 LGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGG----GYTTLTTAIYQAWlGDFDLGAAAALALVLLLL 251

                        250
                 ....*....|....*.
gi 985671553 235 SISVLYVTKKVIGGFR 250
Cdd:COG1178  252 VLLLLLLERRLRRRRR 267
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
30-240 2.18e-24

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 98.29  E-value: 2.18e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  30 SALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFTTPP--GAT 107
Cdd:PRK10971  49 EVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGwyGEW 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 108 VESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARA 187
Cdd:PRK10971 129 LAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRS 208

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 985671553 188 IGEFGATVMLAGATRMKTETMPISIFLNMAEADVAQVAALILITIGISISVLY 240
Cdd:PRK10971 209 LGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLF 261
cysT CHL00187
sulfate transport protein; Provisional
 1-213 1.10e-23

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 95.47  E-value: 1.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   1 MGVILLILFFFFVGLIVVTFLYTGGG-----EIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGED 75
Cdd:CHL00187  12 SIYIISLSYIIFLLVLPILALLIKASqqpwsDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKR 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  76 VIDSTLNLPIVLPPVAVGAILLIFFT--TPPGATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVA 153
Cdd:CHL00187  92 LLDAAVDLPFALPTSVAGLTLATVYGdnGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAA 171

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 154 RTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATRMKTETMPISIF 213
Cdd:CHL00187 172 WSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNIPFKDLVASVLIF 231
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
4-214 4.28e-21

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 89.43  E-value: 4.28e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   4 ILLILFFFFVGL--IVVTFLYTGGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTL 81
Cdd:PRK11602  27 MLVSAFILVVPMiyIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  82 NLPIVLPPVAVGAILLIFFTT--PPGATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYN 159
Cdd:PRK11602 107 DIPFAVSPVVAGLVYLLFYGSngPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGAS 186

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 985671553 160 KFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATRMKTETMPISIFL 214
Cdd:PRK11602 187 GWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIEL 241
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 41-236 9.76e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.39  E-value: 9.76e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  41 IKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFttppgATVESVFVRFTYAVP 120
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF-----GVLLGWGILPGLGLP 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 121 GIILAqFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGA 200
Cdd:cd06261   76 ALILA-LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 985671553 201 TRMKTETMPISIFLNMAEADVAQVAALILITIGISI 236
Cdd:cd06261  155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 44-230 1.38e-14

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 69.88  E-value: 1.38e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  44 SLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFTT--PPGatvesvFVRFTYAVPG 121
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRsgPLG------FLGLLYTPTA 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 122 IILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVtLPMCKKAIIAAGVLAWARAIGEFGATVMLAGAT 201
Cdd:NF038017  75 MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGNI 153

                        170       180       190
                 ....*....|....*....|....*....|.
gi 985671553 202 RMKTETMPISIFL--NMAEADVAQVAALILI 230
Cdd:NF038017 154 RGYTRVLTTAIVLetSKGNFDLALALGIILL 184
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 44-232 3.07e-14

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 70.51  E-value: 3.07e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  44 SLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVgaILLIFFttppgatvesVFVRF----TYAv 119
Cdd:COG0395   79 SLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVL--LIPLYL----------LFRQLgllnTYW- 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 120 pGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAG 199
Cdd:COG0395  146 -GLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLT 224

                        170       180       190
                 ....*....|....*....|....*....|...
gi 985671553 200 ATRMKTETMPISIFLNMAEADVAQVAALILITI 232
Cdd:COG0395  225 SPDLRTLPVGLASFQGQYGTDWGLLMAAAVIAT 257
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 2-252 1.02e-12

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 66.32  E-value: 1.02e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   2 GVILLILFFF--FVGLIVVTFLYTGGGEIIS----------ALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKF 69
Cdd:COG1176   18 ALLWLLLFFVlpLLLLLVYSFTTRDPYGGVVpgftlenyarLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARA 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  70 DFPGEDVIDSTLNLPIVLPP-VAVGAILLIF--------------FTTPPgatvesvfVRFTYAVPGIILAQFVIVTALA 134
Cdd:COG1176   98 PPRWRNLLLLLVILPFWTSFlVRTYAWIVLLgrngllnslllalgLIDEP--------LRLLYTEFAVVIGLVYVYLPFM 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 135 IRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGAtrmKTETMPISIFL 214
Cdd:COG1176  170 VLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGG---KVLMIGNLIYQ 246

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 985671553 215 NMAEA-DVAQVAALILITIGISISVLYVTKKVIGGFRLW 252
Cdd:COG1176  247 QFLSAlNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 44-207 8.72e-11

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 61.42  E-value: 8.72e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  44 SLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFttppgatvesVFVRFTYAVPGII 123
Cdd:COG4135  361 TLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLL----------LRLGLDGTWLAVI 430

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 124 LAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMlAGATRM 203
Cdd:COG4135  431 WAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTLL-IGAGRV 509


                 ....
gi 985671553 204 KTET 207
Cdd:COG4135  510 ATLT 513
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 22-199 4.18e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 59.31  E-value: 4.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   22 YTGGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIvLPPVAVGAILLIFFT 101
Cdd:TIGR03262  37 FIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPL-LAPSLLPAISLIYLF 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  102 TPPGATVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGV 181
Cdd:TIGR03262 116 GNQGLLKGLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAF 195

                         170
                  ....*....|....*...
gi 985671553  182 LAWARAIGEFGATVMLAG 199
Cdd:TIGR03262 196 VVFTLVITDFGVPKVIGG 213
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 44-191 1.80e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 54.00  E-value: 1.80e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  44 SLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDSTLNLPIVLPPV-AVGAILLIFfttppgatvesVFVRFTYAVPGI 122
Cdd:COG3833   78 SLIVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFlALVALYLLL-----------SALGLLNTLLGL 146

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 985671553 123 ILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEF 191
Cdd:COG3833  147 ILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDF 215
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 2-182 2.37e-08

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 54.07  E-value: 2.37e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   2 GVILLILFFFFVGLIVVT-FLYTGGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDST 80
Cdd:PRK09433   6 GVLAAALLVALALLALLAlWLHAPGGDWDAVWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLLRL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  81 LNLPIVLPP-VAVGAILLIFFTTPPGATVESVF---VRFT-YAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVART 155
Cdd:PRK09433  86 CAMTLVLPVlVAVFGLLSVYGRSGWLAQLLQALgleWPFSiYGLQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQ 165

                        170       180
                 ....*....|....*....|....*..
gi 985671553 156 LGYNKFQTFFKVTLPMCKKAIIAAGVL 182
Cdd:PRK09433 166 LGMRGWQFFRLVEWPYLRRQLPPVAAL 192
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 3-229 1.32e-07

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 51.76  E-value: 1.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   3 VILLILFFFFVGLIVVTFLYTG-GGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYA-----LSKFDFPGeDV 76
Cdd:PRK09433 282 GLLIVLALLLLLPPLLAVVVSGlNASLLRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSsrelrLRQRKLAA-QA 360

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  77 IDSTLNLPIVLPPV--AVGAILLIFFTTPPgatvesvfvrFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVAR 154
Cdd:PRK09433 361 LELSGMLILAMPGIvlATGLFLLLRNTTDL----------PASALGIVILTNALMALPYALRVLEPPMRDIAARYGRLCQ 430

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 985671553 155 TLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGAtVMLAGATRMKteTMPISIFLNMA--EADVAQVAALIL 229
Cdd:PRK09433 431 SLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGV-IALFGSQDFR--TLPFLLYQQLGsyRSQDAAVTALLL 504
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 3-237 2.56e-06

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 47.31  E-value: 2.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   3 VILLILFFFFVGLIVVTFLYTGGGEIISA----LSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVID 78
Cdd:PRK15050  33 LVLAPLVVYPLVRVVLQSLTGEHGLGLATyravLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVG 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  79 STLNLPIVLPPVAVgAILLIFFTTPPGA---------TVESVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEY 149
Cdd:PRK15050 113 RFIDTFVAFPSFLI-TLAFTFLYGSAGSvnialqrlfGLEAPPLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQ 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 150 ENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGaTVMLAGATRMKTETMPISIFlNMAEADVAQVAALIL 229
Cdd:PRK15050 192 LEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFG-IVLFTGAKDVVTLPVLIYSK-AIVDFDYPTACAIAV 269


                 ....*...
gi 985671553 230 ITIGISIS 237
Cdd:PRK15050 270 VNLALSLG 277
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 41-183 9.74e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 45.36  E-value: 9.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  41 IKLSLLTATITTIISVLVAIpaayALSKFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFTtppGATVESVFVRFTYAVP 120
Cdd:PRK09500  63 LTMAVFSATFATLIGSLTAV----ALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFM---LLGIQLGFWSLLFAHI 135

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 985671553 121 GIILAqFVIVTALAirvlkpAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLA 183
Cdd:PRK09500 136 TFCLP-FVVVTVYS------RLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLS 191
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 40-234 2.29e-05

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 44.46  E-value: 2.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  40 AIKLSLLTATITTIISVLVAIPAAYALSKF-DFPGEDVIDSTLNLPIVLPPVAVGAILLIFFTtppgATVESVFVRFTYA 118
Cdd:PRK10592  64 AVGLSLTIAACAATAAAILGTIAAVVMVRFgRFRGSNGFAFMITAPLVMPDVITGLSLLLLFV----ALAHAIGWPADRG 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 119 VPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLA 198
Cdd:PRK10592 140 MLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVS 219

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 985671553 199 GAtrmKTETMPISIFLNM---AEADVAQVAALILITIGI 234
Cdd:PRK10592 220 GP---GATTLPMLVFSSVrmgVNPEINALATLILGVVGI 255
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
5-241 2.95e-05

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 44.36  E-value: 2.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   5 LLILFFFFVGLIVVTFLY--------------TGGGEIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKfD 70
Cdd:COG1175   28 LLLLLVFVLYPLLYTLYLsftdwnllgpppefVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-K 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  71 FPGEDVIDSTLNLPIVLPPVAVGAILLIFFTTPPGAtVESVFVRF-----------TYAVPGIILAQ------FVIVTAL 133
Cdd:COG1175  107 LRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGL-LNALLGALglepinwlgdpSLALPAVIIVTvwkgtgFNMLIFL 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 134 AirvlkpAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFG-ATVMLAGATRMKTETMPISI 212
Cdd:COG1175  186 A------GLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDlVYVLTGGGPGNSTTTLVLYI 259

                        250       260       270
                 ....*....|....*....|....*....|..
gi 985671553 213 FLNMAEAD---VAQVAALILITIGISISVLYV 241
Cdd:COG1175  260 YQTAFQQFdfgYASAIAVVLFLIILVLTLLQL 291
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 68-242 7.43e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 42.29  E-value: 7.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   68 KFDFPGEDVIDSTLNLPIVLPPVAVGAILLIFFttppgatvesVFVRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDS 147
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  148 EYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATRMKTETMPISIFLNMAEADVAQVAAL 227
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160

                         170
                  ....*....|....*
gi 985671553  228 ILITIGISISVLYVT 242
Cdd:pfam00528 161 LILLLLNLLVDILQR 175
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 40-240 8.09e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 43.52  E-value: 8.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   40 AIKLSLLTATITTIISVLVAIPAAYALSKFdfPGEDVIDSTLNLPIVLPPVAVGAIL---LIFFTTPPGATVESVFVRFT 116
Cdd:TIGR03262 333 AYKNSLRLAATTALIGTILVFGGAYLIEKT--RGFGLLRGVLRFLAILPMAVPGLVLglgYIFFFNAPTNPLNGLYGTMA 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  117 YAVPGIILAQFVIVTALAIRVLKpafdDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVM 196
Cdd:TIGR03262 411 LLVLCTVVHFYTVSHLTAVTALK----QIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVF 486

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 985671553  197 LAGatrmkTETMPISI-FLNMAEA-DVAQVAA---LILITiGISISVLY 240
Cdd:TIGR03262 487 LYS-----PDTKLASVaILNMDDAgDIAPAAAmatLIVLT-SAVAKLLF 529
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 156-244 1.12e-04

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 42.33  E-value: 1.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 156 LGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATRM-------KTETMPISIF--LNMAEADVAQVAA 226
Cdd:COG0581  151 LGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFlplslfdPFATLPVHIYnlASSPYPAAQELAW 230

                         90       100
                 ....*....|....*....|...
gi 985671553 227 -----LILITIGISISVLYVTKK 244
Cdd:COG0581  231 aaalvLLLLVLLLNLLARLLRRR 253
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 44-234 2.19e-04

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 41.48  E-value: 2.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   44 SLLTATITTIISVLVAIPAAYALSKFDFP-GEDVIDSTLNLPIVLPPVAVGAILLIFFttppGATVESVFVRFTYAVPGI 122
Cdd:TIGR02138  68 TLITSLIALLIAVPVGIGIAIFLSEIAPKrVRSVLKPVVELLAGIPSVVYGFWGLFVL----VPFLKPHFQPFLGSNLGL 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  123 ILAQF-----------VIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEF 191
Cdd:TIGR02138 144 IPLFGgpiltagivlaIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGET 223

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 985671553  192 GATVMLAGATRMK--------TETMPISIFLNMAEADVAQVAALILITIGI 234
Cdd:TIGR02138 224 MAVTMVIGNVFPIsplslfdpGTTITSLIANQFGEASGGSVHTSALFALGL 274
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 27-188 3.20e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 40.90  E-value: 3.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553  27 EIISALSSEETLFAIKLSLLTATITTIISVLVAIPAAYALSKFDFpGEDVIDSTLNLPIVLPPVAVGAILLIFFTTPPGA 106
Cdd:COG0600   49 ALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL-LRRLLDPLLVFLRPIPPLALAPLLILWFGIGEAS 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 107 TVESVFVrftyavpgIILAQFVIVTALAIRVLkpafddfDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWAR 186
Cdd:COG0600  128 KIFVIFL--------GAFFPILLNTAAGVRSV-------DPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGL 192


                 ..
gi 985671553 187 AI 188
Cdd:COG0600  193 AW 194
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 113-215 3.50e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 40.83  E-value: 3.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553 113 VRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVARTLGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFG 192
Cdd:PRK09497 144 IRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFY 223

                         90       100
                 ....*....|....*....|...
gi 985671553 193 ATVMLAGATRMKTETMPISIFLN 215
Cdd:PRK09497 224 VSDLLGGAKNLLIGNVIKSQFLN 246
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 2-230 2.98e-03

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 38.36  E-value: 2.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553    2 GVILLILFFFFVGLIVVTFLYTGGGEIISALSSEETLF-AIKLSLLTATITTIISVLVAIPAAYALSKFDFPGEDVIDST 80
Cdd:TIGR01253   9 GVSAISFIIAFAGAAFLAIFALAGEDDWRAVFQDDYLQhLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKALLKL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985671553   81 LNLPIVLPP-VAVGAILLIFFTTPPGATVESVF----VRFTYAVPGIILAQFVIVTALAIRVLKPAFDDFDSEYENVART 155
Cdd:TIGR01253  89 CALTFILPAlVAIFGIIGIYGRQGWLATLANLFglewQFHIYGLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQ 168

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 985671553  156 LGYNKFQTFFKVTLPMCKKAIIAAGVLAWARAIGEFGATVMLAGATRMKTETMPISIFLNMaEADVAQVAALILI 230
Cdd:TIGR01253 169 LGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLGGGPQATTIELAIYQAILF-DFDLAKAALFALL 242
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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