NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|985494130|ref|WP_060792103|]
View 

WxL protein peptidoglycan domain-containing protein [Enterococcus casseliflavus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF916 super family cl12322
Bacterial protein of unknown function (DUF916); This family consists of several hypothetical ...
 65-166 1.62e-06

Bacterial protein of unknown function (DUF916); This family consists of several hypothetical bacterial proteins of unknown function.


The actual alignment was detected with superfamily member pfam06030:

Pssm-ID: 461805 [Multi-domain]  Cd Length: 120  Bit Score: 46.43  E-value: 1.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985494130   65 KKYTFEIKMENigAGDSSIAVTPFASTAISRES-SILYT-SNTENLLDGKYDFSNYVTIasdaidEENQIEIAPNESVGV 142
Cdd:pfam06030  26 QTQTLQVKITN--LTDEEITVEVTINNATTNDNgVIDYSkSKKKKDKSLKYPLTDLVKL------PKKEVTLPANESKTV 97

                          90       100
                  ....*....|....*....|....
gi 985494130  143 SITINVPDDiELEGTVMGGINFKQ 166
Cdd:pfam06030  98 TFKIKMPDK-AFDGVILGGIYFEE 120
 
Name Accession Description Interval E-value
DUF916 pfam06030
Bacterial protein of unknown function (DUF916); This family consists of several hypothetical ...
 65-166 1.62e-06

Bacterial protein of unknown function (DUF916); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 461805 [Multi-domain]  Cd Length: 120  Bit Score: 46.43  E-value: 1.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985494130   65 KKYTFEIKMENigAGDSSIAVTPFASTAISRES-SILYT-SNTENLLDGKYDFSNYVTIasdaidEENQIEIAPNESVGV 142
Cdd:pfam06030  26 QTQTLQVKITN--LTDEEITVEVTINNATTNDNgVIDYSkSKKKKDKSLKYPLTDLVKL------PKKEVTLPANESKTV 97

                          90       100
                  ....*....|....*....|....
gi 985494130  143 SITINVPDDiELEGTVMGGINFKQ 166
Cdd:pfam06030  98 TFKIKMPDK-AFDGVILGGIYFEE 120
 
Name Accession Description Interval E-value
DUF916 pfam06030
Bacterial protein of unknown function (DUF916); This family consists of several hypothetical ...
 65-166 1.62e-06

Bacterial protein of unknown function (DUF916); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 461805 [Multi-domain]  Cd Length: 120  Bit Score: 46.43  E-value: 1.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985494130   65 KKYTFEIKMENigAGDSSIAVTPFASTAISRES-SILYT-SNTENLLDGKYDFSNYVTIasdaidEENQIEIAPNESVGV 142
Cdd:pfam06030  26 QTQTLQVKITN--LTDEEITVEVTINNATTNDNgVIDYSkSKKKKDKSLKYPLTDLVKL------PKKEVTLPANESKTV 97

                          90       100
                  ....*....|....*....|....
gi 985494130  143 SITINVPDDiELEGTVMGGINFKQ 166
Cdd:pfam06030  98 TFKIKMPDK-AFDGVILGGIYFEE 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH