|
Name |
Accession |
Description |
Interval |
E-value |
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-248 |
1.40e-109 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 316.21 E-value: 1.40e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG 80
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVRLSVQ-----SFVQDYYSFFPSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRK 155
Cdd:COG0411 81 IARTFQNPRLFPELTVLENVLVAAHarlgrGLLAALLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:COG0411 161 LEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEV 240
|
250
....*....|...
gi 984812031 236 MKDERVQSAYLGG 248
Cdd:COG0411 241 RADPRVIEAYLGE 253
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
5-241 |
1.04e-108 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 313.22 E-value: 1.04e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGRS 84
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRLSVQSFVQDYYSFFPSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLAL 164
Cdd:cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDERV 241
Cdd:cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPRV 236
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-247 |
9.35e-74 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 225.00 E-value: 9.35e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG 80
Cdd:COG4674 7 HGPILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVRLSVQSfvqdYYSFFPS-----SAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRK 155
Cdd:COG4674 87 IGRKFQKPTVFEELTVFENLELALKG----DRGVFASlfarlTAEERDRIEEV---LETIGLTDKADRLAGLLSHGQKQW 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:COG4674 160 LEIGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAG--KHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEV 237
|
250
....*....|..
gi 984812031 236 MKDERVQSAYLG 247
Cdd:COG4674 238 QADPRVIEVYLG 249
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
2-248 |
7.94e-59 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 186.34 E-value: 7.94e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 2 THLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGI 81
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 -----GRsfqltNIFPELTVLENVRL------SVQSFVQDY---YSFFPssakfkqqvgearrflktvLLQEKEHVLAKD 147
Cdd:COG0410 81 gyvpeGR-----RIFPSLTVEENLLLgayarrDRAEVRADLervYELFP-------------------RLKERRRQRAGT 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 148 LAHGEKRKLELAMLLALKTDVLLLDEPTAGIS---VEEvpaILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHG 224
Cdd:COG0410 137 LSGGEQQMLAIGRALMSRPKLLLLDEPSLGLApliVEE---IFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERG 212
|
250 260
....*....|....*....|....
gi 984812031 225 ELLAEGMPEEIMKDERVQSAYLGG 248
Cdd:COG0410 213 RIVLEGTAAELLADPEVREAYLGV 236
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
4-247 |
1.38e-57 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 184.04 E-value: 1.38e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGR 83
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENvrLSVQSFVQDYYSFFP---SSAKFKQQVGE----ARRFLKTVLLQEKEHVLAKDLAHGEKRKL 156
Cdd:PRK11300 85 TFQHVRLFREMTVIEN--LLVAQHQQLKTGLFSgllKTPAFRRAESEaldrAATWLERVGLLEHANRQAGNLAYGQQRRL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIM 236
Cdd:PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242
|
250
....*....|.
gi 984812031 237 KDERVQSAYLG 247
Cdd:PRK11300 243 NNPDVIKAYLG 253
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
5-238 |
2.76e-56 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 179.55 E-value: 2.76e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGRS 84
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRLSvqsfvqdyySFFPSSAKFKQQVGEA-RRFLKtvlLQEKEHVLAKDLAHGEKRKLELAMLLA 163
Cdd:cd03224 81 PEGRRIFPELTVEENLLLG---------AYARRRAKRKARLERVyELFPR---LKERRKQLAGTLSGGEQQMLAIARALM 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 164 LKTDVLLLDEPTAGIS---VEEvpaILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:cd03224 149 SRPKLLLLDEPSEGLApkiVEE---IFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
5-237 |
1.01e-51 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 168.32 E-value: 1.01e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIgrS 84
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGY--V 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRlsvqsFVQDYYSFfpSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLAL 164
Cdd:COG1131 79 PQEPALYPDLTVRENLR-----FFARLYGL--PRKEARERIDEL---LELFGLTDAADRKVGTLSGGMKQRLGLALALLH 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMK 237
Cdd:COG1131 149 DPELLILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
5-247 |
6.55e-51 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 166.18 E-value: 6.55e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGRS 84
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRLSVQSFVQDYysffpssakfKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLAL 164
Cdd:cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSK----------KEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 165 KTDVLLLDEPTAG---ISVEEvpaILQVIENIKkhpESTI-VLI-EHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDE 239
Cdd:cd03218 151 NPKFLLLDEPFAGvdpIAVQD---IQKIIKILK---DRGIgVLItDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
....*...
gi 984812031 240 RVQSAYLG 247
Cdd:cd03218 225 LVRKVYLG 232
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
3-247 |
1.17e-49 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 163.28 E-value: 1.17e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 3 HLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIG 82
Cdd:COG1137 2 MTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPELTVLENVRLSVQsfvqdyysFFPSSAKFKQQVGEArrflktvLLQE--KEHvLAKDLAH----GEKRKL 156
Cdd:COG1137 82 YLPQEASIFRKLTVEDNILAVLE--------LRKLSKKEREERLEE-------LLEEfgITH-LRKSKAYslsgGERRRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 157 ELAMLLALKTDVLLLDEPTAG---ISVEEvpaILQVIENIKkhpESTI-VLI-EHKMDMVLGLSDHLIVLFHGELLAEGM 231
Cdd:COG1137 146 EIARALATNPKFILLDEPFAGvdpIAVAD---IQKIIRHLK---ERGIgVLItDHNVRETLGICDRAYIISEGKVLAEGT 219
|
250
....*....|....*.
gi 984812031 232 PEEIMKDERVQSAYLG 247
Cdd:COG1137 220 PEEILNNPLVRKVYLG 235
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
5-240 |
1.86e-48 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 159.81 E-value: 1.86e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSF-GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD-RTRLGIG 82
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRElRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 rsFQltniFPEL-----TVLENVrlsvqsfvqdyySFFP-----SSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGE 152
Cdd:COG1122 81 --FQ----NPDDqlfapTVEEDV------------AFGPenlglPREEIRERVEEA---LELVGLEHLADRPPHELSGGQ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGI---SVEEvpaILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAE 229
Cdd:COG1122 140 KQRVAIAGVLAMEPEVLVLDEPTAGLdprGRRE---LLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVAD 215
|
250
....*....|.
gi 984812031 230 GMPEEIMKDER 240
Cdd:COG1122 216 GTPREVFSDYE 226
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
4-237 |
8.85e-48 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 158.48 E-value: 8.85e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIgr 83
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGV-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENVRLsvqsfvqdYYSFFPSSAkfKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLA 163
Cdd:COG4555 79 LPDERGLYDRLTVRENIRY--------FAELYGLFD--EELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALV 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 984812031 164 LKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPeSTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMK 237
Cdd:COG4555 149 HDPKVLLLDEPTNGLDVMARRLLREILRALKKEG-KTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELRE 221
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-245 |
1.05e-47 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 158.67 E-value: 1.05e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIGR 83
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARR-IAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENV---RLSVQSFvqdyysFFPSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAM 160
Cdd:COG1120 80 VPQEPPAPFGLTVRELValgRYPHLGL------FGRPSAEDREAVEEA---LERTGLEHLADRPVDELSGGERQRVLIAR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 161 LLALKTDVLLLDEPTAG--IS--VEevpaILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIM 236
Cdd:COG1120 151 ALAQEPPLLLLDEPTSHldLAhqLE----VLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVL 226
|
....*....
gi 984812031 237 KDERVQSAY 245
Cdd:COG1120 227 TPELLEEVY 235
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
5-243 |
1.11e-47 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 158.05 E-value: 1.11e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD--RTRLGIG 82
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAElyRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPELTVLENVRlsvqsfvqdyysfFP---SSAKFKQQVGE-ARRFLKTVLLQEKEHVLAKDLAHGEKRKLEL 158
Cdd:cd03261 81 MLFQSGALFDSLTVFENVA-------------FPlreHTRLSEEEIREiVLEKLEAVGLRGAEDLYPAELSGGMKKRVAL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 159 AMLLALKTDVLLLDEPTAG---ISVEEvpaILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:cd03261 148 ARALALDPELLLYDEPTAGldpIASGV---IDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
250
....*....|
gi 984812031 236 MK--DERVQS 243
Cdd:cd03261 225 RAsdDPLVRQ 234
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
5-247 |
1.45e-47 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 157.82 E-value: 1.45e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGRS 84
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRLSVQsfvqdyysffpssakFKQQVGEARRFLKTVLLQEKEHV------LAKDLAHGEKRKLEL 158
Cdd:TIGR04406 82 PQEASIFRKLTVEENIMAVLE---------------IRKDLDRAEREERLEALLEEFQIshlrdnKAMSLSGGERRRVEI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 159 AMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKkhpESTI-VLI-EHKMDMVLGLSDHLIVLFHGELLAEGMPEEIM 236
Cdd:TIGR04406 147 ARALATNPKFILLDEPFAGVDPIAVGDIKKIIKHLK---ERGIgVLItDHNVRETLDICDRAYIISDGKVLAEGTPAEIV 223
|
250
....*....|.
gi 984812031 237 KDERVQSAYLG 247
Cdd:TIGR04406 224 ANEKVRRVYLG 234
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-242 |
4.41e-44 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 148.97 E-value: 4.41e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRL- 79
Cdd:COG1127 2 SEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYELr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 -GIGRSFQLTNIFPELTVLENVRlsvqsfvqdyysfFP-------SSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHG 151
Cdd:COG1127 82 rRIGMLFQGGALFDSLTVFENVA-------------FPlrehtdlSEAEIRELVLEK---LELVGLPGAADKMPSELSGG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 152 EKRKLELAMLLALKTDVLLLDEPTAG---ISVEEvpaILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLA 228
Cdd:COG1127 146 MRKRVALARALALDPEILLYDEPTAGldpITSAV---IDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIA 222
|
250
....*....|....*.
gi 984812031 229 EGMPEEIMK--DERVQ 242
Cdd:COG1127 223 EGTPEELLAsdDPWVR 238
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-245 |
1.12e-43 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 147.93 E-value: 1.12e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKlsisDRTRLG 80
Cdd:COG1121 3 MMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRR----ARRRIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 -------IGRSfqltniFPeLTVLENV---RLSVQSFvqdyysFFPSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAH 150
Cdd:COG1121 79 yvpqraeVDWD------FP-ITVRDVVlmgRYGRRGL------FRRPSRADREAVDEA---LERVGLEDLADRPIGELSG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 151 GEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLfHGELLAEG 230
Cdd:COG1121 143 GQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLL-NRGLVAHG 220
|
250
....*....|....*
gi 984812031 231 MPEEIMKDERVQSAY 245
Cdd:COG1121 221 PPEEVLTPENLSRAY 235
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
5-226 |
4.90e-43 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 144.08 E-value: 4.90e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIgrS 84
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY--L 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRLSvqsfvqdyysffpssakfkqqvgearrflktvllqekehvlakdlaHGEKRKLELAMLLAL 164
Cdd:cd03230 79 PEEPSLYENLTVRENLKLS----------------------------------------------GGMKQRLALAQALLH 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
6-225 |
3.49e-42 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 142.99 E-value: 3.49e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSF--GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtRLGIGR 83
Cdd:cd03225 1 ELKNLSFSYpdGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKEL-RRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQltniFPE-----LTVLENVrlsvqsfvqdyySFFPSSAKFKQQVGEARRF--LKTVLLQEKEHVLAKDLAHGEKRKL 156
Cdd:cd03225 80 VFQ----NPDdqffgPTVEEEV------------AFGLENLGLPEEEIEERVEeaLELVGLEGLRDRSPFTLSGGQKQRV 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPeSTIVLIEHKMDMVLGLSDHLIVLFHGE 225
Cdd:cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG-KTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
5-245 |
4.97e-42 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 143.48 E-value: 4.97e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGE-HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD--RTRLGI 81
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAlrQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 GRSFQLTNIFPELTVLENV---RLSVQSFVQDYYSFFPssakfKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLEL 158
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVlsgRLGRRSTWRSLFGLFP-----KEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 159 AMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEImKD 238
Cdd:cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL-TD 234
|
....*..
gi 984812031 239 ERVQSAY 245
Cdd:cd03256 235 EVLDEIY 241
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
6-230 |
3.17e-41 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 140.75 E-value: 3.17e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKlsisdrTRLGIGRSF 85
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK------ERKRIGYVP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 86 QLTNI---FPeLTVLENVRLSVQSFVQdyySFFPSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLL 162
Cdd:cd03235 75 QRRSIdrdFP-ISVRDVVLMGLYGHKG---LFRRLSKADKAKVDEA---LERVGLSELADRQIGELSGGQQQRVLLARAL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHlIVLFHGELLAEG 230
Cdd:cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
5-235 |
4.17e-40 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 138.08 E-value: 4.17e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTL---FNLLSGQIS--PTKGEVYFKGQEITKLSISD-RTR 78
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLlrlLNRLNDLIPgaPDEGEVLLDGKDIYDLDVDVlELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 79 LGIGRSFQLTNIFPeLTVLENVRLSVQsfVQDYYsffpSSAKFKQQVGEArrfLKTVLL--QEKEHVLAKDLAHGEKRKL 156
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGLR--LHGIK----LKEELDERVEEA---LRKAALwdEVKDRLHALGLSGGQQQRL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
5-235 |
5.82e-40 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 137.64 E-value: 5.82e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFG--EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIg 82
Cdd:cd03263 1 LQIRNLTKTYKkgTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 rSFQLTNIFPELTVLENVRLsvqsfvqdyYSFFPSSAKFKQQVgEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLL 162
Cdd:cd03263 80 -CPQFDALFDELTVREHLRF---------YARLKGLPKSEIKE-EVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIAL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpeSTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG--RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
20-176 |
1.22e-39 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 134.70 E-value: 1.22e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 20 IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtRLGIGRSFQLTNIFPELTVLEN 99
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSL-RKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 100 VRLSVqsfvqdyYSFFPSSAKFKQQVGEARRFLK-TVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTA 176
Cdd:pfam00005 80 LRLGL-------LLKGLSKREKDARAEEALEKLGlGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
5-235 |
1.45e-39 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 136.73 E-value: 1.45e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIgrS 84
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI--V 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENvrLSVQSFVQDYysffpSSAKFKQQVGEARRFLKtvlLQEKEHVLAKDLAHGEKRKLELAMLLAL 164
Cdd:cd03265 79 FQDLSVDDELTGWEN--LYIHARLYGV-----PGAERRERIDELLDFVG---LLEAADRLVKTYSGGMRRRLEIARSLVH 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-239 |
1.14e-38 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 140.54 E-value: 1.14e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG 80
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVRLSVQsfvqdyysffPSSAKF---KQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLE 157
Cdd:COG1129 81 IAIIHQELNLVPNLSVAENIFLGRE----------PRRGGLidwRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 158 LAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMK 237
Cdd:COG1129 151 IARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQ-GVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELTE 229
|
..
gi 984812031 238 DE 239
Cdd:COG1129 230 DE 231
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
5-226 |
1.71e-38 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 133.77 E-value: 1.71e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFG----EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRL- 79
Cdd:cd03255 1 IELKNLSKTYGgggeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 --GIGRSFQLTNIFPELTVLENVRLsvqsfvqdyySFFPSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLE 157
Cdd:cd03255 81 rrHIGFVFQSFNLLPDLTALENVEL----------PLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 158 LAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVlGLSDHLIVLFHGEL 226
Cdd:cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-244 |
1.72e-38 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 140.42 E-value: 1.72e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSF--GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPT---KGEVYFKGQEITKLSISD 75
Cdd:COG1123 1 MTPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 76 RTRLgIGRSFQ--LTNIFPeLTVLENVRLSVQSFVQdyysffpSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEK 153
Cdd:COG1123 81 RGRR-IGMVFQdpMTQLNP-VTVGDQIAEALENLGL-------SRAEARARVLEL---LEAVGLERRLDRYPHQLSGGQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 154 RKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPE 233
Cdd:COG1123 149 QRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPE 228
|
250
....*....|.
gi 984812031 234 EIMKDERVQSA 244
Cdd:COG1123 229 EILAAPQALAA 239
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
6-230 |
5.78e-38 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 131.02 E-value: 5.78e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIGRSF 85
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK-IAYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 86 QltnifpeltVLENVRLSvqsfvqdyysffpssakfkqqvGEARRFLKTvllqekehvlakdLAHGEKRKLELAMLLALK 165
Cdd:cd03214 80 Q---------ALELLGLA----------------------HLADRPFNE-------------LSGGERQRVLLARALAQE 115
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 166 TDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03214 116 PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
3-191 |
1.19e-37 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 131.06 E-value: 1.19e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 3 HLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIg 82
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAY- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 rSFQLTNIFPELTVLENVRlsvqsFVQDYYSFFPSSAkfkqqvgEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLL 162
Cdd:COG4133 80 -LGHADGLKPELTVRENLR-----FWAALYGLRADRE-------AIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLL 146
|
170 180
....*....|....*....|....*....
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIE 191
Cdd:COG4133 147 LSPAPLWLLDEPFTALDAAGVALLAELIA 175
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
5-226 |
2.94e-36 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 127.65 E-value: 2.94e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSI-SDRTRLGIGR 83
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKnINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENVRLSVQSfVQdyysffpssAKFKQQVGE-ARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLL 162
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLAPIK-VK---------GMSKAEAEErALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIkKHPESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
5-225 |
4.67e-36 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 126.15 E-value: 4.67e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRT-RLGIGR 83
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPlRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENVRLSvqsfvqdyysffpssakfkqqvgearrflktvllqekehvlakdLAHGEKRKLELAMLLA 163
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG--------------------------------------------LSGGQQQRVALARALA 116
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 984812031 164 LKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGE 225
Cdd:cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
5-221 |
6.87e-36 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 127.20 E-value: 6.87e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFG----EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITklsisdRTRLG 80
Cdd:cd03293 1 LEVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT------GPGPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVRLSVQSfvqdyysffpSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAM 160
Cdd:cd03293 75 RGYVFQQDALLPWLTVLDNVALGLEL----------QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALAR 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 161 LLALKTDVLLLDEP-------TAGISVEEvpailqvIENIKKHPESTIVLIEHKMDMVLGLSDHLIVL 221
Cdd:cd03293 145 ALAVDPDVLLLDEPfsaldalTREQLQEE-------LLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-239 |
1.15e-35 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 132.46 E-value: 1.15e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG 80
Cdd:COG3845 2 MPPALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRDAIALG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVRLSvqsfVQDYYSFFPSSAKFKQQVGE-ARRF-LKtVLLQEKehvlAKDLAHGEKRKLEL 158
Cdd:COG3845 82 IGMVHQHFMLVPNLTVAENIVLG----LEPTKGGRLDRKAARARIRElSERYgLD-VDPDAK----VEDLSVGEQQRVEI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 159 AMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKK--HpesTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIM 236
Cdd:COG3845 153 LKALYRGARILILDEPTAVLTPQEADELFEILRRLAAegK---SIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETS 229
|
...
gi 984812031 237 KDE 239
Cdd:COG3845 230 EEE 232
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
4-230 |
1.09e-34 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 124.16 E-value: 1.09e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSF----GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLsiSDRTRL 79
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKL--SRRLRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 GIGRSFQLtnIFpeltvlenvrlsvqsfvQDYYSFFPSSAKFKQQVGEA---------RRFLKTVLLQEKEHV-LAKDLA 149
Cdd:cd03257 79 IRRKEIQM--VF-----------------QDPMSSLNPRMTIGEQIAEPlrihgklskKEARKEAVLLLLVGVgLPEEVL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 150 H--------GEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVL 221
Cdd:cd03257 140 NryphelsgGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM 219
|
....*....
gi 984812031 222 FHGELLAEG 230
Cdd:cd03257 220 YAGKIVEEG 228
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-229 |
1.38e-34 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 121.77 E-value: 1.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGRS 84
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQltnifpeltvlenvrLSVqsfvqdyysffpssakfkqqvgearrflktvllqekehvlakdlahGEKRKLELAMLLAL 164
Cdd:cd03216 81 YQ---------------LSV----------------------------------------------GERQMVEIARALAR 99
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAE 229
Cdd:cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
5-230 |
1.50e-34 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 123.40 E-value: 1.50e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtrlGIGRS 84
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR---NIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVR--LSVQSFvqdyysffpSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLL 162
Cdd:cd03259 78 FQDYALFPHLTVAENIAfgLKLRGV---------PKAEIRARVREL---LELVGLEGLLNRYPHELSGGQQQRVALARAL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
6-225 |
2.17e-34 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 121.20 E-value: 2.17e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtRLGIGRSF 85
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL-RRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 86 QLTnifpeltvlenvrlsvqsfvqdyysffpssakfkqqvgearrflktvllqekehvlakdlaHGEKRKLELAMLLALK 165
Cdd:cd00267 80 QLS-------------------------------------------------------------GGQRQRVALARALLLN 98
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 166 TDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGE 225
Cdd:cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
4-235 |
4.92e-34 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 122.69 E-value: 4.92e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEH----HVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRT-- 77
Cdd:cd03258 1 MIELKNVSKVFGDTggkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRka 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 78 RLGIGRSFQLTNIFPELTVLENVRLSVQsfvqdyysffpsSAKFKQQVGEAR--RFLKTVLLQEKEHVLAKDLAHGEKRK 155
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLE------------IAGVPKAEIEERvlELLELVGLEDKADAYPAQLSGGQKQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-240 |
5.06e-34 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 128.10 E-value: 5.06e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSF-----GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTR 78
Cdd:COG1123 260 LLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 79 LG--IGRSFQ--LTNIFPELTVLENVRLSVQSFvqdyysFFPSSAKFKQQVGEArrfLKTV-LLQEKEHVLAKDLAHGEK 153
Cdd:COG1123 340 LRrrVQMVFQdpYSSLNPRMTVGDIIAEPLRLH------GLLSRAERRERVAEL---LERVgLPPDLADRYPHELSGGQR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 154 RKLELAMLLALKTDVLLLDEPTAG--ISVEEvpAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGM 231
Cdd:COG1123 411 QRVAIARALALEPKLLILDEPTSAldVSVQA--QILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGP 488
|
....*....
gi 984812031 232 PEEIMKDER 240
Cdd:COG1123 489 TEEVFANPQ 497
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
5-233 |
6.52e-34 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 122.48 E-value: 6.52e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQIS--PTKGEVYFKGQEITKLSISDRTRLGIG 82
Cdd:COG0396 1 LEIKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKyeVTSGSILLDGEDILELSPDERARAGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPELTVLENVRLSVQSFVQDyysfFPSSAKFKQQVGEARRFLKtvllqekehvLAKDLAH---------GEK 153
Cdd:COG0396 81 LAFQYPVEIPGVSVSNFLRTALNARRGE----ELSAREFLKLLKEKMKELG----------LDEDFLDryvnegfsgGEK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 154 RKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhPESTIVLIEHK---MDMVlgLSDHLIVLFHGELLAEG 230
Cdd:COG0396 147 KRNEILQMLLLEPKLAILDETDSGLDIDALRIVAEGVNKLRS-PDRGILIITHYqriLDYI--KPDFVHVLVDGRIVKSG 223
|
...
gi 984812031 231 MPE 233
Cdd:COG0396 224 GKE 226
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
4-247 |
9.34e-34 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 122.31 E-value: 9.34e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGR 83
Cdd:PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENVrLSVQSFVQDYYSffpssakfKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLA 163
Cdd:PRK10895 83 LPQEASIFRRLSVYDNL-MAVLQIRDDLSA--------EQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 164 LKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPEStIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDERVQS 243
Cdd:PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG-VLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKR 232
|
....
gi 984812031 244 AYLG 247
Cdd:PRK10895 233 VYLG 236
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-235 |
8.47e-33 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 122.13 E-value: 8.47e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtrlG 80
Cdd:COG3842 2 AMPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEKR---N 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQ---LtniFPELTVLENVR--LSVQSFvqdyysffpSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRK 155
Cdd:COG3842 79 VGMVFQdyaL---FPHLTVAENVAfgLRMRGV---------PKAEIRARVAEL---LELVGLEGLADRYPHQLSGGQQQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGIsveEVPAILQVIENIKK-HPES--TIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMP 232
Cdd:COG3842 144 VALARALAPEPRVLLLDEPLSAL---DAKLREEMREELRRlQRELgiTFIYVTHDQEEALALADRIAVMNDGRIEQVGTP 220
|
...
gi 984812031 233 EEI 235
Cdd:COG3842 221 EEI 223
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
5-235 |
2.10e-32 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 118.49 E-value: 2.10e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtrlGIGRS 84
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKR---PVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRlsvqsfvqdyysfFP------SSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLEL 158
Cdd:cd03300 78 FQNYALFPHLTVFENIA-------------FGlrlkklPKAEIKERVAEA---LDLVQLEGYANRKPSQLSGGQQQRVAI 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 159 AMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:cd03300 142 ARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-254 |
2.68e-32 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 119.10 E-value: 2.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSisdRTRLG 80
Cdd:PRK11831 4 VANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMS---RSRLY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRS-----FQLTNIFPELTVLENVRLSVQSFVQDYYSFFPSSAKFKqqvgearrfLKTVLLQEKEHVLAKDLAHGEKRK 155
Cdd:PRK11831 81 TVRKrmsmlFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMK---------LEAVGLRGAAKLMPSELSGGMARR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
250 260
....*....|....*....|.
gi 984812031 236 MK--DERVQSaYLGGLYSGTI 254
Cdd:PRK11831 232 QAnpDPRVRQ-FLDGIADGPV 251
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
5-226 |
3.53e-32 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 117.22 E-value: 3.53e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD-RTRlgIGR 83
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEwRRQ--VAY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPElTVLENVRlsvqsfvqdyysfFPSSAKFKQQVGE-ARRFLKTVLLQEkeHVLAKDLAH---GEKRKLELA 159
Cdd:COG4619 79 VPQEPALWGG-TVRDNLP-------------FPFQLRERKFDRErALELLERLGLPP--DILDKPVERlsgGERQRLALI 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 160 MLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:COG4619 143 RALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
6-245 |
3.63e-32 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 118.26 E-value: 3.63e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDR-TRLGIGRs 84
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELaKRLAILR- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 fQLTNIfpeltvleNVRLSVQSFVqdyySF--FPSS-----AKFKQQVGEARRFLKtvlLQEKEHVLAKDLAHGEKRKLE 157
Cdd:COG4604 82 -QENHI--------NSRLTVRELV----AFgrFPYSkgrltAEDREIIDEAIAYLD---LEDLADRYLDELSGGQRQRAF 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 158 LAMLLALKTDVLLLDEPTAGI----SVEevpaILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPE 233
Cdd:COG4604 146 IAMVLAQDTDYVLLDEPLNNLdmkhSVQ----MMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPE 221
|
250
....*....|..
gi 984812031 234 EIMKDERVQSAY 245
Cdd:COG4604 222 EIITPEVLSDIY 233
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
3-246 |
4.51e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 118.75 E-value: 4.51e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 3 HLLETKNLSVSF-GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDrTRLGI 81
Cdd:PRK13652 2 HLIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIRE-VRKFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 GRSFQLTN--IFPElTVLENVRLSVQSFVQDyysffpsSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELA 159
Cdd:PRK13652 81 GLVFQNPDdqIFSP-TVEQDIAFGPINLGLD-------EETVAHRVSSA---LHMLGLEELRDRVPHHLSGGEKKRVAIA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 160 MLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI-MKD 238
Cdd:PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIfLQP 229
|
....*...
gi 984812031 239 ERVQSAYL 246
Cdd:PRK13652 230 DLLARVHL 237
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
4-245 |
4.68e-32 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 117.91 E-value: 4.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDR-TRLGIG 82
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELaRRRAVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RsfQLTNI-FPeLTVLENVRLSVqsfvqdyYSFFPSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAML 161
Cdd:COG4559 81 P--QHSSLaFP-FTVEEVVALGR-------APHGSSAAQDRQIVREA---LALVGLAHLAGRSYQTLSGGEQQRVQLARV 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 162 LA-LKTDV------LLLDEPTAGISVEEVPAILQVIENIKKHPeSTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEE 234
Cdd:COG4559 148 LAqLWEPVdggprwLFLDEPTSALDLAHQHAVLRLARQLARRG-GGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEE 226
|
250
....*....|.
gi 984812031 235 IMKDERVQSAY 245
Cdd:COG4559 227 VLTDELLERVY 237
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
5-238 |
1.20e-31 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 115.32 E-value: 1.20e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQIS--PTKGEVYFKGQEITKLSISDRTRLGIG 82
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKyeVTEGEILFKGEDITDLPPEERARLGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPELTVLENVRlsvqsFVQDYYSffpssakfkqqvGearrflktvllqekehvlakdlahGEKRKLELAMLL 162
Cdd:cd03217 81 LAFQYPPEIPGVKNADFLR-----YVNEGFS------------G------------------------GEKKRNEILQLL 119
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhPESTIVLIEHKMDMVLGL-SDHLIVLFHGELLAEGmPEEIMKD 238
Cdd:cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG-DKELALE 194
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-241 |
1.35e-31 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 121.43 E-value: 1.35e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG 80
Cdd:PRK09700 2 ATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENV---RLSVQSF----VQDYysffpssAKFKQQvgeARRFLKTVLLQEKEHVLAKDLAHGEK 153
Cdd:PRK09700 82 IGIIYQELSVIDELTVLENLyigRHLTKKVcgvnIIDW-------REMRVR---AAMMLLRVGLKVDLDEKVANLSISHK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 154 RKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPEStIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPE 233
Cdd:PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTA-IVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230
|
....*...
gi 984812031 234 EIMKDERV 241
Cdd:PRK09700 231 DVSNDDIV 238
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-248 |
5.09e-31 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 114.98 E-value: 5.09e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG 80
Cdd:PRK11614 2 EKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVRLSvqsfvqdyySFFPSSAKFKQQVgeARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAM 160
Cdd:PRK11614 82 VAIVPEGRRVFSRMTVEENLAMG---------GFFAERDQFQERI--KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 161 LLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDER 240
Cdd:PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEA 229
|
....*...
gi 984812031 241 VQSAYLGG 248
Cdd:PRK11614 230 VRSAYLGG 237
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
5-245 |
1.37e-30 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 114.34 E-value: 1.37e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLsiSDRTrlgIGRS 84
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML--SSRQ---LARR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLtniFPE-LTVLENVrlSVQSFVQ----DYYSFFPS-SAKFKQQVGEARRFLKTVLLQEKehvLAKDLAHGEKRKLEL 158
Cdd:PRK11231 78 LAL---LPQhHLTPEGI--TVRELVAygrsPWLSLWGRlSAEDNARVNQAMEQTRINHLADR---RLTDLSGGQRQRAFL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 159 AMLLALKTDVLLLDEPTAGISVE---EVPAILQVIENIKKhpesTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINhqvELMRLMRELNTQGK----TVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225
|
250
....*....|
gi 984812031 236 MKDERVQSAY 245
Cdd:PRK11231 226 MTPGLLRTVF 235
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
5-235 |
2.05e-30 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 113.20 E-value: 2.05e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtrlGIGRS 84
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQER---NVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVR--LSVQSFVQDyysffPSSAKFKQQVgeaRRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLL 162
Cdd:cd03296 80 FQHYALFRHMTVFDNVAfgLRVKPRSER-----PPEAEIRAKV---HELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 163 ALKTDVLLLDEPTAGISV---EEVPAILQVIenikkHPES--TIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:cd03296 152 AVEPKVLLLDEPFGALDAkvrKELRRWLRRL-----HDELhvTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-245 |
4.72e-30 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 112.49 E-value: 4.72e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKG-EVYFKGQEITKLSISD-RTRLGI 81
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGEDVWElRKRIGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 gRSFQLTNIFPELTVLENVRLSvqsfvqdyySFFPSSAKFKQ----QVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLE 157
Cdd:COG1119 83 -VSPALQLRFPRDETVLDVVLS---------GFFDSIGLYREptdeQRERARELLELLGLAHLADRPFGTLSQGEQRRVL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 158 LAMllALKTD--VLLLDEPTAG---ISVEEVpaiLQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMP 232
Cdd:COG1119 153 IAR--ALVKDpeLLILDEPTAGldlGARELL---LALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPK 227
|
250
....*....|...
gi 984812031 233 EEIMKDERVQSAY 245
Cdd:COG1119 228 EEVLTSENLSEAF 240
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
5-230 |
7.00e-30 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 111.15 E-value: 7.00e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLsISDRTRlgIGRS 84
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRR--IGAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRLsvqsfvqdyysffpsSAKFKqQVGEAR--RFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLL 162
Cdd:cd03268 78 IEAPGFYPNLTARENLRL---------------LARLL-GIRKKRidEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALAL 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-238 |
1.31e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 111.47 E-value: 1.31e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTL---FNLLS--GQISPTKGEVYFKGQEITKLSISD 75
Cdd:PRK14267 1 MKFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLlrtFNRLLelNEEARVEGEVRLFGRNIYSPDVDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 76 -RTRLGIGRSFQLTNIFPELTVLENVRLSVQsfvqdYYSFFPSSAKFKQQVGEARRflKTVLLQEKEHVL---AKDLAHG 151
Cdd:PRK14267 81 iEVRREVGMVFQYPNPFPHLTIYDNVAIGVK-----LNGLVKSKKELDERVEWALK--KAALWDEVKDRLndyPSNLSGG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 152 EKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGM 231
Cdd:PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231
|
....*..
gi 984812031 232 PEEIMKD 238
Cdd:PRK14267 232 TRKVFEN 238
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-245 |
1.94e-29 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 111.40 E-value: 1.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDR-TRLGIG 82
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELaRRRAVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RsfQLTNI-FPeLTVLENVRLSVQSFVQdyysffpSSAKFKQQVgearrflktvllqekEHVLAK-DLAH---------- 150
Cdd:PRK13548 82 P--QHSSLsFP-FTVEEVVAMGRAPHGL-------SRAEDDALV---------------AAALAQvDLAHlagrdypqls 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 151 -GEKRKLELAMLLA------LKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHkmDmvLGL----SDHLI 219
Cdd:PRK13548 137 gGEQQRVQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLH--D--LNLaaryADRIV 212
|
250 260
....*....|....*....|....*.
gi 984812031 220 VLFHGELLAEGMPEEIMKDERVQSAY 245
Cdd:PRK13548 213 LLHQGRLVADGTPAEVLTPETLRRVY 238
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
4-246 |
2.36e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 111.32 E-value: 2.36e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGE-HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEIT---KLSISDRTRL 79
Cdd:PRK13639 1 ILETRDLKYSYPDgTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKydkKSLLEVRKTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 GIgrSFQLTN--IFPElTVLENVrlsvqsfvqdyySFFPSSAKFKQQVGEAR--RFLKTVLLQEKEHVLAKDLAHGEKRK 155
Cdd:PRK13639 81 GI--VFQNPDdqLFAP-TVEEDV------------AFGPLNLGLSKEEVEKRvkEALKAVGMEGFENKPPHHLSGGQKKR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:PRK13639 146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
250
....*....|..
gi 984812031 236 MKD-ERVQSAYL 246
Cdd:PRK13639 225 FSDiETIRKANL 236
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
5-236 |
3.27e-29 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 110.08 E-value: 3.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHH-VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISdRTRLGIGR 83
Cdd:cd03295 1 IEFENVTKRYGGGKkAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPV-ELRRKIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENVRLsvqsfvqdyysfFPSSAKFKQQVGEAR--RFLKTVLLQEKEHV--LAKDLAHGEKRKLELA 159
Cdd:cd03295 80 VIQQIGLFPHMTVEENIAL------------VPKLLKWPKEKIRERadELLALVGLDPAEFAdrYPHELSGGQQQRVGVA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 160 MLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIM 236
Cdd:cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-240 |
5.20e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 110.00 E-value: 5.20e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQI-----SPTKGEVYFKGQEITKLSISD-RTR 78
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIelypeARVSGEVYLDGQDIFKMDVIElRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 79 LGIgrSFQLTNIFPELTVLENVRLSVQsfvqdYYSFFPSSAKFKQQVGEARRflKTVLLQEKEHVL---AKDLAHGEKRK 155
Cdd:PRK14247 84 VQM--VFQIPNPIPNLSIFENVALGLK-----LNRLVKSKKELQERVRWALE--KAQLWDEVKDRLdapAGKLSGGQQQR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
....*
gi 984812031 236 MKDER 240
Cdd:PRK14247 233 FTNPR 237
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
5-253 |
6.93e-29 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 112.63 E-value: 6.93e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIGRS 84
Cdd:PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-VASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRLSVQsfvqdyysffPSSAKFKQQVGEARRFLKTVLLQEKEHVLA----KDLAHGEKRKLELAM 160
Cdd:PRK09536 83 PQDTSLSFEFDVRQVVEMGRT----------PHRSRFDTWTETDRAAVERAMERTGVAQFAdrpvTSLSGGERQRVLLAR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 161 LLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIeHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDER 240
Cdd:PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI-HDLDLAARYCDELVLLADGRVRAAGPPADVLTADT 231
|
250
....*....|...
gi 984812031 241 VQSAYLGGLYSGT 253
Cdd:PRK09536 232 LRAAFDARTAVGT 244
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
6-237 |
1.27e-28 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 108.47 E-value: 1.27e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSFGE-HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISdRTRLGIGRS 84
Cdd:cd03254 4 EFENVNFSYDEkKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK-SLRSMIGVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPElTVLENVRLSVQSFVQDyysffpSSAKFKQQVGeARRFLKTvLLQEKEHVL---AKDLAHGEKRKLELAML 161
Cdd:cd03254 83 LQDTFLFSG-TIMENIRLGRPNATDE------EVIEAAKEAG-AHDFIMK-LPNGYDTVLgenGGNLSQGERQLLAIARA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 162 LALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGlSDHLIVLFHGELLAEGMPEEIMK 237
Cdd:cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLA 226
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
4-238 |
1.45e-28 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 108.64 E-value: 1.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRT-RLGIG 82
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLiRQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPELTVLENVrlsvqsfvqdyySFFP------SSAKFKQQvgeARRFLKTVLLQEKEHVLAKDLAHGEKRKL 156
Cdd:PRK09493 81 MVFQQFYLFPHLTALENV------------MFGPlrvrgaSKEEAEKQ---ARELLAKVGLAERAHHYPSELSGGQQQRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIM 236
Cdd:PRK09493 146 AIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
..
gi 984812031 237 KD 238
Cdd:PRK09493 225 KN 226
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
5-233 |
1.46e-28 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 108.50 E-value: 1.46e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQIS--PTKGEVYFKGQEITKLSISDRTRLGIG 82
Cdd:TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSyeVTSGTILFKGQDLLELEPDERARAGLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPELTVLENVRLSVQSFvqdyysffpSSAKFKQQVgEARRFLKtvLLQEKEHVLAKDLAH-----------G 151
Cdd:TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNAR---------RSARGEEPL-DLLDFEK--LLKEKLALLDMDEEFlnrsvnegfsgG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 152 EKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhPESTIVLIEHKMDMVLGLS-DHLIVLFHGELLAEG 230
Cdd:TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKpDYVHVLLDGRIVKSG 227
|
...
gi 984812031 231 MPE 233
Cdd:TIGR01978 228 DVE 230
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
3-237 |
1.73e-28 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 110.96 E-value: 1.73e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 3 HLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTrlgIG 82
Cdd:PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD---IC 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPELTVLENVR--LSVQSFvqdyysffpSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAM 160
Cdd:PRK11432 82 MVFQSYALFPHMSLGENVGygLKMLGV---------PKEERKQRVKEA---LELVDLAGFEDRYVDQISGGQQQRVALAR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 161 LLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMK 237
Cdd:PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
5-235 |
1.94e-28 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 110.17 E-value: 1.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSF----GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD--RTR 78
Cdd:COG1135 2 IELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERElrAAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 79 LGIGRSFQLTNIFPELTVLENVRlsvqsfvqdyysfFP------SSAKFKQQVGEarrFLKTVLLQEKEHVLAKDLAHGE 152
Cdd:COG1135 82 RKIGMIFQHFNLLSSRTVAENVA-------------LPleiagvPKAEIRKRVAE---LLELVGLSDKADAYPSQLSGGQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMP 232
Cdd:COG1135 146 KQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPV 225
|
...
gi 984812031 233 EEI 235
Cdd:COG1135 226 LDV 228
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
5-225 |
3.81e-28 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 105.54 E-value: 3.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFG--EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIG 82
Cdd:cd03228 1 IEFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN-IA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPElTVLENVrLSVqsfvqdyysffpssakfkqqvgearrflktvllqekehvlakdlahGEKRKLELAMLL 162
Cdd:cd03228 80 YVPQDPFLFSG-TIRENI-LSG----------------------------------------------GQRQRIAIARAL 111
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLgLSDHLIVLFHGE 225
Cdd:cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
5-249 |
4.03e-28 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 107.75 E-value: 4.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEIT-------KLSISDRT 77
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgQLKVADKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 78 RLGIGRS-----FQLTNIFPELTVLENVrlsVQSFVQdyySFFPSSAKFKQQvgeARRFLKTVLLQEKEHV-LAKDLAHG 151
Cdd:PRK10619 86 QLRLLRTrltmvFQHFNLWSHMTVLENV---MEAPIQ---VLGLSKQEARER---AVKYLAKVGIDERAQGkYPVHLSGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 152 EKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPEsTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGM 231
Cdd:PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235
|
250 260
....*....|....*....|.
gi 984812031 232 PEEIM---KDERVQSAYLGGL 249
Cdd:PRK10619 236 PEQLFgnpQSPRLQQFLKGSL 256
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
5-230 |
5.25e-28 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 106.21 E-value: 5.25e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQeitKLSISDRTRlgIGRS 84
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK---PLDIAARNR--IGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRlsvqsFVQDYYSFFPSSAKfkqqvGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLAL 164
Cdd:cd03269 76 PEERGLYPKMKVIDQLV-----YLAQLKGLKKEEAR-----RRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIH 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
5-247 |
6.12e-28 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 106.76 E-value: 6.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHviKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDR--TRLgig 82
Cdd:COG3840 2 LRLDDLTYRYGDFP--LRFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAERpvSML--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 rsFQLTNIFPELTVLENVRLSVQsfvqdyysffPS---SAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELA 159
Cdd:COG3840 77 --FQENNLFPHLTVAQNIGLGLR----------PGlklTAEQRAQVEQA---LERVGLAGLLDRLPGQLSGGQRQRVALA 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 160 MLLALKTDVLLLDEPTAGISveevPA----ILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:COG3840 142 RCLVRKRPILLLDEPFSALD----PAlrqeMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAAL 217
|
250
....*....|....
gi 984812031 236 MKDERVQ--SAYLG 247
Cdd:COG3840 218 LDGEPPPalAAYLG 231
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-239 |
9.83e-28 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 107.97 E-value: 9.83e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG 80
Cdd:PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQltNIFPELTVLENVRLsvqsfvqdYYSFFPSSAkfkqqvGEARRFLKTVL----LQEKEHVLAKDLAHGEKRKL 156
Cdd:PRK13537 84 VVPQFD--NLDPDFTVRENLLV--------FGRYFGLSA------AAARALVPPLLefakLENKADAKVGELSGGMKRRL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPEsTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIM 236
Cdd:PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK-TILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
|
...
gi 984812031 237 KDE 239
Cdd:PRK13537 227 ESE 229
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
5-237 |
1.11e-27 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 105.88 E-value: 1.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHViKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtrlGIGRS 84
Cdd:cd03299 1 LKVENLSKDWKEFKL-KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR---DISYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRLSVQSFVQDyysffpsSAKFKQQVGEARRFLKTvllqekEHVLAKD---LAHGEKRKLELAML 161
Cdd:cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVD-------KKEIERKVLEIAEMLGI------DHLLNRKpetLSGGEQQRVAIARA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 162 LALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMK 237
Cdd:cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
6-241 |
1.29e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 106.61 E-value: 1.29e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSFGEHH--VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD-RTRLGIg 82
Cdd:PRK13632 9 KVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEiRKKIGI- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 rSFQ-LTNIFPELTV-------LENVRLS---VQSFVQDYysffpssakfKQQVGearrfLKTVLLQEKEHvlakdLAHG 151
Cdd:PRK13632 88 -IFQnPDNQFIGATVeddiafgLENKKVPpkkMKDIIDDL----------AKKVG-----MEDYLDKEPQN-----LSGG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 152 EKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLgLSDHLIVLFHGELLAEGM 231
Cdd:PRK13632 147 QKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGK 225
|
250
....*....|
gi 984812031 232 PEEIMKDERV 241
Cdd:PRK13632 226 PKEILNNKEI 235
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
5-245 |
3.07e-27 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 105.84 E-value: 3.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIGRS 84
Cdd:PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR-IGLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVrlsvqsfVQDYYSFFPSSAKFKQQVGEA-RRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLA 163
Cdd:PRK10253 87 AQNATTPGDITVQELV-------ARGRYPHQPLFTRWRKEDEEAvTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 164 LKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDERVQS 243
Cdd:PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIER 239
|
..
gi 984812031 244 AY 245
Cdd:PRK10253 240 IY 241
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
5-176 |
3.32e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 105.55 E-value: 3.32e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFG-----EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRL 79
Cdd:COG1101 2 LELKNLSKTFNpgtvnEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 gIGRSFQ--LTNIFPELTVLENVRLsvqsfvqdyysffpssAKFKqqvGEARRFLKTVLLQEKEHV--LAKDLAHG-EKR 154
Cdd:COG1101 82 -IGRVFQdpMMGTAPSMTIEENLAL----------------AYRR---GKRRGLRRGLTKKRRELFreLLATLGLGlENR 141
|
170 180 190
....*....|....*....|....*....|....*..
gi 984812031 155 kLE-------------LAMLLAL--KTDVLLLDEPTA 176
Cdd:COG1101 142 -LDtkvgllsggqrqaLSLLMATltKPKLLLLDEHTA 177
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
5-237 |
4.25e-27 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 109.54 E-value: 4.25e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHH--VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIG 82
Cdd:COG2274 474 IELENVSFRYPGDSppVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQ-IG 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPElTVLENVRLS-----------------VQSFVQDyysfFPssAKFKQQVGEArrflktvllqekehvlA 145
Cdd:COG2274 553 VVLQDVFLFSG-TIRENITLGdpdatdeeiieaarlagLHDFIEA----LP--MGYDTVVGEG----------------G 609
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 146 KDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpeSTIVLIEHKMDMVlGLSDHLIVLFHGE 225
Cdd:COG2274 610 SNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKG--RTVIIIAHRLSTI-RLADRIIVLDKGR 686
|
250
....*....|..
gi 984812031 226 LLAEGMPEEIMK 237
Cdd:COG2274 687 IVEDGTHEELLA 698
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
5-239 |
4.82e-27 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 109.09 E-value: 4.82e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSF--GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIG 82
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR-IA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPElTVLENVRLsvqsfvqdyysffpssakFKQQVGEA--RRFLKTVLLQEkehvLAKDLAH---------- 150
Cdd:COG4987 413 VVPQRPHLFDT-TLRENLRL------------------ARPDATDEelWAALERVGLGD----WLAALPDgldtwlgegg 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 151 -----GEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQvieNIKKH-PESTIVLIEHKMDmVLGLSDHLIVLFHG 224
Cdd:COG4987 470 rrlsgGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLA---DLLEAlAGRTVLLITHRLA-GLERMDRILVLEDG 545
|
250
....*....|....*
gi 984812031 225 ELLAEGMPEEIMKDE 239
Cdd:COG4987 546 RIVEQGTHEELLAQN 560
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
5-239 |
5.38e-27 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 109.08 E-value: 5.38e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSF-GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD-RTRLG-I 81
Cdd:COG4988 337 IELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASwRRQIAwV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 GrsfQLTNIFPElTVLENVRLSVQSfvqdyysffPSSAKFKQ---QVGeARRFLKTvLLQEKEHVLAKD---LAHGEKRK 155
Cdd:COG4988 417 P---QNPYLFAG-TIRENLRLGRPD---------ASDEELEAaleAAG-LDEFVAA-LPDGLDTPLGEGgrgLSGGQAQR 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpeSTIVLIEHKMDMVlGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:COG4988 482 LALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKG--RTVILITHRLALL-AQADRILVLDDGRIVEQGTHEEL 558
|
....
gi 984812031 236 MKDE 239
Cdd:COG4988 559 LAKN 562
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
12-230 |
7.86e-27 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 103.34 E-value: 7.86e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 12 VSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTrlgIGRSFQLTNIF 91
Cdd:cd03298 6 IRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP---VSMLFQENNLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 92 PELTVLENVRLSVQsfvqdyysffPSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLL 171
Cdd:cd03298 83 AHLTVEQNVGLGLS----------PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 172 DEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03298 153 DEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
8-226 |
9.00e-27 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 103.21 E-value: 9.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 8 KNLSVSF-GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD----RTRLGIg 82
Cdd:COG2884 5 ENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREipylRRRIGV- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 rSFQLTNIFPELTVLENVRLSVQsfVQDYysffpSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLL 162
Cdd:COG2884 84 -VFQDFRLLPDRTVYENVALPLR--VTGK-----SRKEIRRRVREV---LDLVGLSDKAKALPHELSGGEQQRVAIARAL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 163 ALKTDVLLLDEPTAGI----SVEevpaILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:COG2884 153 VNRPELLLADEPTGNLdpetSWE----IMELLEEINRR-GTTVLIATHDLELVDRMPKRVLELEDGRL 215
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
5-226 |
9.52e-27 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 103.10 E-value: 9.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtrlGIGRS 84
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR---DIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVR--LSVQSFVQDyysffpssaKFKQQVGEARRFLKTvllqekEHVL---AKDLAHGEKRKLELA 159
Cdd:cd03301 78 FQNYALYPHMTVYDNIAfgLKLRKVPKD---------EIDERVREVAELLQI------EHLLdrkPKQLSGGQRQRVALG 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 160 MLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-175 |
9.63e-27 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 107.84 E-value: 9.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVyfkgqeitklSISDRTRLGigr 83
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTV----------KLGETVKIG--- 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SF--QLTNIFPELTVLENVRlsvqsfvqDYYSffpssakfKQQVGEARRFLKTVLL-QEKEHVLAKDLAHGEKRKLELAM 160
Cdd:COG0488 382 YFdqHQEELDPDKTVLDELR--------DGAP--------GGTEQEVRGYLGRFLFsGDDAFKPVGVLSGGEKARLALAK 445
|
170
....*....|....*
gi 984812031 161 LLALKTDVLLLDEPT 175
Cdd:COG0488 446 LLLSPPNVLLLDEPT 460
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
19-230 |
1.40e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 103.18 E-value: 1.40e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGI--GrsfQLTNIFPELTV 96
Cdd:cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVvfG---QKTQLWWDLPV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENVRLsvqsfVQDYYSFFPssAKFKQQVGEARRFLKtvlLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTA 176
Cdd:cd03267 113 IDSFYL-----LAAIYDLPP--ARFKKRLDELSELLD---LEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 984812031 177 GISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
20-238 |
2.57e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 103.56 E-value: 2.57e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 20 IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEIT------KLSisdRTRLGIGRSFQltniFPE 93
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknkKLK---PLRKKVGIVFQ----FPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 94 LTVLENVrlsvqsfVQDYYSFFPSSAKFKQQVGE--ARRFLKTVLLQEKehVLAK---DLAHGEKRKLELAMLLALKTDV 168
Cdd:PRK13634 96 HQLFEET-------VEKDICFGPMNFGVSEEDAKqkAREMIELVGLPEE--LLARspfELSGGQMRRVAIAGVLAMEPEV 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 169 LLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:PRK13634 167 LVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
5-230 |
3.50e-26 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 101.50 E-value: 3.50e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGkLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGigrs 84
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 F--QLTNIFPELTVLENVrlsvqsfvqDYYSFFP--SSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAM 160
Cdd:cd03264 76 YlpQEFGVYPNFTVREFL---------DYIAWLKgiPSKEVKARVDEV---LELVNLGDRAKKKIGSLSGGMRRRVGIAQ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 161 LLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1-246 |
3.99e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 102.89 E-value: 3.99e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGE-HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDrTRL 79
Cdd:PRK13647 1 MDNIIEVEDLHFRYKDgTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKW-VRS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 GIGRSFQLTN--IFpELTVLENVrlsvqsfvqdyySFFP-----SSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGE 152
Cdd:PRK13647 80 KVGLVFQDPDdqVF-SSTVWDDV------------AFGPvnmglDKDEVERRVEEA---LKAVRMWDFRDKPPYHLSYGQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGIS---VEEVPAILQVIENIKKhpesTIVLIEHKMDMVLGLSDHLIVLFHGELLAE 229
Cdd:PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDprgQETLMEILDRLHNQGK----TVIVATHDVDLAAEWADQVIVLKEGRVLAE 219
|
250
....*....|....*..
gi 984812031 230 GMPEEIMKDERVQSAYL 246
Cdd:PRK13647 220 GDKSLLTDEDIVEQAGL 236
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
16-247 |
4.18e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 103.20 E-value: 4.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 16 EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEIT--KLSISD-RTRLGIgrSFQltniFP 92
Cdd:PRK13637 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITdkKVKLSDiRKKVGL--VFQ----YP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 93 ELTVLENVrlsvqsfVQDYYSFFPSSAKFKQQVGEAR--RFLKTVLLqEKEHVLAK---DLAHGEKRKLELAMLLALKTD 167
Cdd:PRK13637 93 EYQLFEET-------IEKDIAFGPINLGLSEEEIENRvkRAMNIVGL-DYEDYKDKspfELSGGQKRRVAIAGVVAMEPK 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 168 VLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD-ERVQSAYL 246
Cdd:PRK13637 165 ILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEvETLESIGL 244
|
.
gi 984812031 247 G 247
Cdd:PRK13637 245 A 245
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
15-210 |
1.42e-25 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 99.42 E-value: 1.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 15 GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEItklsisDRTRLGigrsfqltnifpel 94
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL------DYSRKG-------------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 95 tvLENVRLSVQSFVQD-----YY-------SFFP-----SSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLE 157
Cdd:TIGR01166 63 --LLERRQRVGLVFQDpddqlFAadvdqdvAFGPlnlglSEAEVERRVREA---LTAVGASGLRERPTHCLSGGEKKRVA 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 984812031 158 LAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDM 210
Cdd:TIGR01166 138 IAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTHDVDL 189
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
20-236 |
1.51e-25 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 101.18 E-value: 1.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 20 IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRL---GIGRSFQLTNIFPELTV 96
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELrrkKISMVFQSFALLPHRTV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENVR--LSVQSFvqdyysffpsSAKFKQQVgeARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEP 174
Cdd:cd03294 120 LENVAfgLEVQGV----------PRAEREER--AAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 175 TAG----ISVEEVPAILQVIENIKKhpesTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIM 236
Cdd:cd03294 188 FSAldplIRREMQDELLRLQAELQK----TIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-235 |
1.56e-25 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 103.38 E-value: 1.56e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTrlg 80
Cdd:PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVRLSVQsfvQDYYsffpSSAKFKQQVGEarrFLKTVLLQEKEHVLAKDLAHGEKRKLELAM 160
Cdd:PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLK---QDKL----PKAEIASRVNE---MLGLVHMQEFAKRKPHQLSGGQRQRVALAR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 161 LLALKTDVLLLDEPTAGISVE-------EVPAILQVIenikkhpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPE 233
Cdd:PRK11607 163 SLAKRPKLLLLDEPMGALDKKlrdrmqlEVVDILERV-------GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPE 235
|
..
gi 984812031 234 EI 235
Cdd:PRK11607 236 EI 237
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
7-230 |
2.96e-25 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 99.36 E-value: 2.96e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 7 TKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIgrSFQ 86
Cdd:cd03266 8 TKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGF--VSD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 87 LTNIFPELTVLENVRlsvqsFVQDYYSFFPssAKFKQQVGEARRFLKTVLLQEKEhvlAKDLAHGEKRKLELAMLLALKT 166
Cdd:cd03266 86 STGLYDRLTARENLE-----YFAGLYGLKG--DELTARLEELADRLGMEELLDRR---VGGFSTGMRQKVAIARALVHDP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 984812031 167 DVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-234 |
2.97e-25 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 103.86 E-value: 2.97e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGqISPT---KGEVYFKGQEITKLSISDRT 77
Cdd:PRK13549 2 MEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHgtyEGEIIFEGEELQASNIRDTE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 78 RLGIGRSFQLTNIFPELTVLENVRLS---VQSFVQDYysffpssakfKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKR 154
Cdd:PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGneiTPGGIMDY----------DAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 155 KLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELL----AEG 230
Cdd:PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGRHIgtrpAAG 229
|
....
gi 984812031 231 MPEE 234
Cdd:PRK13549 230 MTED 233
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
4-235 |
4.15e-25 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 100.08 E-value: 4.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQeitKLSISDRTRLGIGR 83
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK---PLDYSKRGLLALRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 sfQLTNIF--PELtvlenvrlsvqsfvQDYYSFFPSSAKFKQQ---VGE---ARRFLKTVLLQEKEHVLAKD---LAHGE 152
Cdd:PRK13638 78 --QVATVFqdPEQ--------------QIFYTDIDSDIAFSLRnlgVPEaeiTRRVDEALTLVDAQHFRHQPiqcLSHGQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPEStIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMP 232
Cdd:PRK13638 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH-VIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
...
gi 984812031 233 EEI 235
Cdd:PRK13638 221 GEV 223
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
5-230 |
1.63e-24 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 97.90 E-value: 1.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEI-TKLSISDRTRL---- 79
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIdTARSLSQQKGLirql 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 --GIGRSFQLTNIFPELTVLENV---RLSVQSFVQDyysffpssakfkQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKR 154
Cdd:PRK11264 84 rqHVGFVFQNFNLFPHRTVLENIiegPVIVKGEPKE------------EATARARELLAKVGLAGKETSYPRRLSGGQQQ 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 155 KLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
6-235 |
1.71e-24 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 99.88 E-value: 1.71e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSF----GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD--RTRL 79
Cdd:PRK11153 3 ELKNISKVFpqggRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKElrKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 GIGRSFQLTNIFPELTVLENVrlsvqsfvqdyysFFP------SSAKFKQQVGEarrFLKTVLLQEKEHVLAKDLAHGEK 153
Cdd:PRK11153 83 QIGMIFQHFNLLSSRTVFDNV-------------ALPlelagtPKAEIKARVTE---LLELVGLSDKADRYPAQLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 154 RKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPE 233
Cdd:PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVS 226
|
..
gi 984812031 234 EI 235
Cdd:PRK11153 227 EV 228
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
7-175 |
1.72e-24 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 101.68 E-value: 1.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 7 TKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYF-KGQEITKLSisdrtrlgigrsf 85
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIpKGLRIGYLP------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 86 QLTNIFPELTVLENVRLSVQSFVQDYYSFFPSSAKFKQQVGEARRF------------------LKTVLL-----QEKEH 142
Cdd:COG0488 68 QEPPLDDDLTVLDTVLDGDAELRALEAELEELEAKLAEPDEDLERLaelqeefealggweaearAEEILSglgfpEEDLD 147
|
170 180 190
....*....|....*....|....*....|...
gi 984812031 143 VLAKDLAHGEKRKLELAMLLALKTDVLLLDEPT 175
Cdd:COG0488 148 RPVSELSGGWRRRVALARALLSEPDLLLLDEPT 180
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-248 |
2.15e-24 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 97.80 E-value: 2.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTL---FN----LLSGQIspTKGEVYFKGQEITKLSI 73
Cdd:COG1117 8 LEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLlrcLNrmndLIPGAR--VEGEILLDGEDIYDPDV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 74 sD----RTRlgIGRSFQLTNIFPeLTVLENV----RLsvqsfvQDYYSffpssakfKQQVGEA-RRFLKTV-LLQEKEHV 143
Cdd:COG1117 86 -DvvelRRR--VGMVFQKPNPFP-KSIYDNVayglRL------HGIKS--------KSELDEIvEESLRKAaLWDEVKDR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 144 L---AKDLAHGEKRKLELAMLLALKTDVLLLDEPTAG---IS---VEEvpailqVIENIKKhpESTIVLIEHKMDMVLGL 214
Cdd:COG1117 148 LkksALGLSGGQQQRLCIARALAVEPEVLLMDEPTSAldpIStakIEE------LILELKK--DYTIVIVTHNMQQAARV 219
|
250 260 270
....*....|....*....|....*....|....*..
gi 984812031 215 SDHLIVLFHGELLAEGMPEEIM---KDERVQsAYLGG 248
Cdd:COG1117 220 SDYTAFFYLGELVEFGPTEQIFtnpKDKRTE-DYITG 255
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
22-257 |
3.49e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 97.98 E-value: 3.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 22 DVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSIS---DRTRLGIGRSFQltniFPELTVLE 98
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNknlKKLRKKVSLVFQ----FPEAQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 99 NVRLSVQSFVQDYYSFFPSSAKFKqqvgeARRFLKTVLLqeKEHVLAK---DLAHGEKRKLELAMLLALKTDVLLLDEPT 175
Cdd:PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKVGL--SEDLISKspfELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 176 AGISVEEVPAILQVIENIKKHPEsTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD-ERVQSAYLGGLYSGTI 254
Cdd:PRK13641 174 AGLDPEGRKEMMQLFKDYQKAGH-TVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDkEWLKKHYLDEPATSRF 252
|
...
gi 984812031 255 TSE 257
Cdd:PRK13641 253 ASK 255
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
2-239 |
3.76e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 97.51 E-value: 3.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 2 THLLETKNLSVSF--GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDrTRL 79
Cdd:PRK13648 5 NSIIVFKNVSFQYqsDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK-LRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 GIGRSFQ-LTNIFPELTVLENVRLSVQSFVQDYysffpssAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLEL 158
Cdd:PRK13648 84 HIGIVFQnPDNQFVGSIVKYDVAFGLENHAVPY-------DEMHRRVSEA---LKQVDMLERADYEPNALSGGQKQRVAI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 159 AMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGlSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDH 232
|
.
gi 984812031 239 E 239
Cdd:PRK13648 233 A 233
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
9-238 |
3.86e-24 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 99.03 E-value: 3.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 9 NLSVSFGEHHVikDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKG---QEITKLSISDRTRLGIGRSF 85
Cdd:TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGrtlFDSRKGIFLPPEKRRIGYVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 86 QLTNIFPELTVLENVRlsvqsfvqdyYSFFPSSAKFKQQvgearRFLKTVLLQEKEHVLAK---DLAHGEKRKLELAMLL 162
Cdd:TIGR02142 82 QEARLFPHLSVRGNLR----------YGMKRARPSERRI-----SFERVIELLGIGHLLGRlpgRLSGGEKQRVAIGRAL 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-237 |
4.80e-24 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 96.69 E-value: 4.80e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSF----------------------GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTK 58
Cdd:COG1134 1 MSSMIEVENVSKSYrlyhepsrslkelllrrrrtrrEEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 59 GEVYFKGqEITKLsisdrtrLGIGRSFQltnifPELTVLENVRL--SVQSFvqdyysffpSSAKFKQQVGEARRF----- 131
Cdd:COG1134 81 GRVEVNG-RVSAL-------LELGAGFH-----PELTGRENIYLngRLLGL---------SRKEIDEKFDEIVEFaelgd 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 132 -----LKTvllqekehvlakdLAHGEKRKLELAMLLALKTDVLLLDEptagisveevpaILQV------------IENIK 194
Cdd:COG1134 139 fidqpVKT-------------YSSGMRARLAFAVATAVDPDILLVDE------------VLAVgdaafqkkclarIRELR 193
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 984812031 195 KHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMK 237
Cdd:COG1134 194 ES-GRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIA 235
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
3-241 |
7.34e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 97.23 E-value: 7.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 3 HLLETKNLSVSFGE-HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEItklsisDRTRLGI 81
Cdd:PRK13636 4 YILKVEELNYNYSDgTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI------DYSRKGL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 grsfqltnifpeLTVLENVRLSVQS-----FVQDYY---SFFPSSAKF-KQQVGE-ARRFLKTVLLQEKEHVLAKDLAHG 151
Cdd:PRK13636 78 ------------MKLRESVGMVFQDpdnqlFSASVYqdvSFGAVNLKLpEDEVRKrVDNALKRTGIEHLKDKPTHCLSFG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 152 EKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGM 231
Cdd:PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
|
250
....*....|
gi 984812031 232 PEEIMKDERV 241
Cdd:PRK13636 226 PKEVFAEKEM 235
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
4-234 |
9.31e-24 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 99.51 E-value: 9.31e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGqISPT---KGEVYFKGQEITKLSISDRTRLG 80
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYWSGSPLKASNIRDTERAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVrlsvqsFVQDYYSFFPSSAKFKQQVGEARRFLKTVLLQEKEHVLA-KDLAHGEKRKLELA 159
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENI------FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 160 MLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIvLIEHKMDMVLGLSDHLIVLFHGELLA----EGMPEE 234
Cdd:TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACV-YISHKLNEVKAVCDTICVIRDGQHVAtkdmSTMSED 231
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
4-239 |
1.07e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 97.23 E-value: 1.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHH-----VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFK----GQEIT----- 69
Cdd:PRK13631 21 ILRVKNLYCVFDEKQenelvALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGdiyiGDKKNnheli 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 70 ------KLSISDRTRLGIGRSFQltniFPELTVLENVrlsvqsfVQDYYSFFPSSAKFKQQvgEARRFLKTVL--LQEKE 141
Cdd:PRK13631 101 tnpyskKIKNFKELRRRVSMVFQ----FPEYQLFKDT-------IEKDIMFGPVALGVKKS--EAKKLAKFYLnkMGLDD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 142 HVLAK---DLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHL 218
Cdd:PRK13631 168 SYLERspfGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEV 246
|
250 260
....*....|....*....|.
gi 984812031 219 IVLFHGELLAEGMPEEIMKDE 239
Cdd:PRK13631 247 IVMDKGKILKTGTPYEIFTDQ 267
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
5-235 |
1.07e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 96.72 E-value: 1.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITklsisDRTRLGIG-- 82
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD-----PEDRRRIGyl 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 ---RSfqltnIFPELTVLENVRlsvqsfvqdyysFFpssAKFKQ-QVGEARRFLKTVL----LQEKEHVLAKDLAHGEKR 154
Cdd:COG4152 77 peeRG-----LYPKMKVGEQLV------------YL---ARLKGlSKAEAKRRADEWLerlgLGDRANKKVEELSKGNQQ 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 155 KLELAMLLALKTDVLLLDEPTAG---ISVEEvpaILQVIENIKKhPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGM 231
Cdd:COG4152 137 KVQLIAALLHDPELLILDEPFSGldpVNVEL---LKDVIRELAA-KGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGS 212
|
....
gi 984812031 232 PEEI 235
Cdd:COG4152 213 VDEI 216
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
5-238 |
2.63e-23 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 96.69 E-value: 2.63e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTrlgIGRS 84
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK---VGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVR--LSVQSFVQDyysffPSSAKFKQQVgeaRRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLL 162
Cdd:PRK10851 80 FQHYALFRHMTVFDNIAfgLTVLPRRER-----PNAAAIKAKV---TQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 163 ALKTDVLLLDEP----TAGISVEEVPAILQVIENIKkhpeSTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:PRK10851 152 AVEPQILLLDEPfgalDAQVRKELRRWLRQLHEELK----FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
5-230 |
2.78e-23 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 94.19 E-value: 2.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSF--GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtRLGIG 82
Cdd:cd03245 3 IEFRNVSFSYpnQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL-RRNIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIF------------PELT---VLENVRLS-VQSFVQDyysffpSSAKFKQQVGEARRFlktvllqekehvlak 146
Cdd:cd03245 82 YVPQDVTLFygtlrdnitlgaPLADderILRAAELAgVTDFVNK------HPNGLDLQIGERGRG--------------- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 147 dLAHGEKRKLELAMLLALKTDVLLLDEPTAG--ISVEEvpailQVIENIKKHPES-TIVLIEHKMDMvLGLSDHLIVLFH 223
Cdd:cd03245 141 -LSGGQRQAVALARALLNDPPILLLDEPTSAmdMNSEE-----RLKERLRQLLGDkTLIIITHRPSL-LDLVDRIIVMDS 213
|
....*..
gi 984812031 224 GELLAEG 230
Cdd:cd03245 214 GRIVADG 220
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
5-241 |
3.52e-23 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 96.05 E-value: 3.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGRS 84
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQltNIFPELTVLENVRLsvqsfvqdYYSFFPSSAKFKQQVGEArrFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLAL 164
Cdd:PRK13536 122 FD--NLDLEFTVRENLLV--------FGRYFGMSTREIEAVIPS--LLEFARLESKADARVSDLSGGMKRRLTLARALIN 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIKKHPEsTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMkDERV 241
Cdd:PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGK-TILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI-DEHI 264
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-235 |
4.35e-23 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 96.55 E-value: 4.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 2 THLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTrlgI 81
Cdd:PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH---V 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 GRSFQLTNIFPELTVLENVR--LSVQSFvqdyysffpSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELA 159
Cdd:PRK09452 89 NTVFQSYALFPHMTVFENVAfgLRMQKT---------PAAEITPRVMEA---LRMVQLEEFAQRKPHQLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 160 MLLALKTDVLLLDEPTAGISVE-------EVPAiLQVIENIkkhpesTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMP 232
Cdd:PRK09452 157 RAVVNKPKVLLLDESLSALDYKlrkqmqnELKA-LQRKLGI------TFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP 229
|
...
gi 984812031 233 EEI 235
Cdd:PRK09452 230 REI 232
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-245 |
5.09e-23 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 94.31 E-value: 5.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTK---GEVYFKGQEIT---KLSIS 74
Cdd:PRK09984 1 MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKsagSHIELLGRTVQregRLARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 75 DR-TRLGIGRSFQLTNIFPELTVLENV---RLSVQSFVQDYYSFFPssakfKQQVGEARRFLKTVLLQEKEHVLAKDLAH 150
Cdd:PRK09984 81 IRkSRANTGYIFQQFNLVNRLSVLENVligALGSTPFWRTCFSWFT-----REQKQRALQALTRVGMVHFAHQRVSTLSG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 151 GEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
250
....*....|....*
gi 984812031 231 MPEEiMKDERVQSAY 245
Cdd:PRK09984 236 SSQQ-FDNERFDHLY 249
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
16-238 |
6.81e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 94.46 E-value: 6.81e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 16 EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVyfkgqEITKLSISDRT--------RLGIGRSFQl 87
Cdd:PRK13646 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-----TVDDITITHKTkdkyirpvRKRIGMVFQ- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 88 tniFPELTVLENVrlsvqsfVQDYYSFFPSSakFKQQVGEARRFLKTVLLQE--KEHVLAKD---LAHGEKRKLELAMLL 162
Cdd:PRK13646 93 ---FPESQLFEDT-------VEREIIFGPKN--FKMNLDEVKNYAHRLLMDLgfSRDVMSQSpfqMSGGQMRKIAIVSIL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
15-230 |
7.18e-23 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 92.98 E-value: 7.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 15 GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQeITKLsisdrtrLGIGRSFQltnifPEL 94
Cdd:cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-VSSL-------LGLGGGFN-----PEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 95 TVLENVRLS----------VQSFVQDYYSFFPSSAKFKQQVgearrflktvllqekehvlaKDLAHGEKRKLELAMLLAL 164
Cdd:cd03220 100 TGRENIYLNgrllglsrkeIDEKIDEIIEFSELGDFIDLPV--------------------KTYSSGMKARLAFAIATAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
4-218 |
8.38e-23 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 92.96 E-value: 8.38e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHH----VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRL 79
Cdd:PRK11629 5 LLQCDNLCKRYQEGSvqtdVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 ---GIGRSFQLTNIFPELTVLENVRLSVqsfvqdyysfFPSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKL 156
Cdd:PRK11629 85 rnqKLGFIYQFHHLLPDFTALENVAMPL----------LIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRV 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHL 218
Cdd:PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
5-191 |
1.12e-22 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 92.24 E-value: 1.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIGRS 84
Cdd:PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY-LGHR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTnifPELTVLENVRlsvqsFVQDYYSFFPSSakfkqqVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLAL 164
Cdd:PRK13539 82 NAMK---PALTVAENLE-----FWAAFLGGEELD------IAAA---LEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS 144
|
170 180
....*....|....*....|....*..
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIE 191
Cdd:PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIR 171
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
22-226 |
1.22e-22 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 92.09 E-value: 1.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 22 DVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKL--SISDRTRLGIGRSFQLTNIFPELTVLEN 99
Cdd:cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLrgRAIPYLRRKIGVVFQDFRLLPDRNVYEN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 100 VRLSVQsfVQDYysffpSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGIS 179
Cdd:cd03292 99 VAFALE--VTGV-----PPREIRKRVPAA---LELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLD 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 984812031 180 VEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:cd03292 169 PDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
11-238 |
2.18e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 95.64 E-value: 2.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 11 SVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFK-GQE---ITKLSISDRTRLG--IGRS 84
Cdd:TIGR03269 291 SVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEwvdMTKPGPDGRGRAKryIGIL 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLTNIFPELTVLENVRLSVQSFVQDYYsffpssAKFKqqvgeARRFLKTVLLQEK--EHVLAK---DLAHGEKRKLELA 159
Cdd:TIGR03269 371 HQEYDLYPHRTVLDNLTEAIGLELPDEL------ARMK-----AVITLKMVGFDEEkaEEILDKypdELSEGERHRVALA 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 160 MLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:TIGR03269 440 QVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-238 |
3.50e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 92.46 E-value: 3.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSF------GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSIS 74
Cdd:PRK13633 1 MNEMIKCKNVSYKYesneesTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 75 DRTRLGIGRSFQltNifPELTVlenvrlsVQSFVQDYYSFFPS-----SAKFKQQVGEArrfLKTVLLQEKEHVLAKDLA 149
Cdd:PRK13633 81 WDIRNKAGMVFQ--N--PDNQI-------VATIVEEDVAFGPEnlgipPEEIRERVDES---LKKVGMYEYRRHAPHLLS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 150 HGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGlSDHLIVLFHGELLAE 229
Cdd:PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVME 225
|
....*....
gi 984812031 230 GMPEEIMKD 238
Cdd:PRK13633 226 GTPKEIFKE 234
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
22-238 |
4.15e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 92.49 E-value: 4.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 22 DVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD-----RTRLGIGRSFQLTNIFPElTV 96
Cdd:PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKeikpvRKKVGVVFQFPESQLFEE-TV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENVRLSVQSFVQDYYSFFPSSAKFKQQVGEARRFLKTVLLQekehvlakdLAHGEKRKLELAMLLALKTDVLLLDEPTA 176
Cdd:PRK13643 103 LKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE---------LSGGQMRRVAIAGILAMEPEVLVLDEPTA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 984812031 177 GISVEEVPAILQVIENIKKHPEsTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:PRK13643 174 GLDPKARIEMMQLFESIHQSGQ-TVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
6-226 |
4.62e-22 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 90.39 E-value: 4.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSFGEHH-VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQeitKLSISDRTRlGIGRS 84
Cdd:cd03226 1 RIENISFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK---PIKAKERRK-SIGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQ-LTNIFPELTVLENVRLSVqsfvqdyysffPSSAKFKQQvgeARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLA 163
Cdd:cd03226 77 MQdVDYQLFTDSVREELLLGL-----------KELDAGNEQ---AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALL 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984812031 164 LKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
4-176 |
6.35e-22 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 89.86 E-value: 6.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSIS-DRTRLGIG 82
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEyHQDLLYLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 rsfQLTNIFPELTVLENVRlsvqsfvqdyysffpSSAKFKQQVGEARRF--LKTVLLQEKEHVLAKDLAHGEKRKLELAM 160
Cdd:PRK13538 81 ---HQPGIKTELTALENLR---------------FYQRLHGPGDDEALWeaLAQVGLAGFEDVPVRQLSAGQQRRVALAR 142
|
170
....*....|....*..
gi 984812031 161 LLALKTDVLLLDEP-TA 176
Cdd:PRK13538 143 LWLTRAPLWILDEPfTA 159
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
5-240 |
6.95e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 92.07 E-value: 6.95e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFG-----EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYF-------------KGQ 66
Cdd:PRK13651 3 IKVKNIVKIFNkklptELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWifkdeknkkktkeKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 67 EITKLSISD------------RTRLGIGRSFQLTNIFpELTVLENVRLSVQSFVQDyysffPSSAKFKqqvgeARRFLKT 134
Cdd:PRK13651 83 VLEKLVIQKtrfkkikkikeiRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVS-----KEEAKKR-----AAKYIEL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 135 VLLQEKehVLAK---DLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPEsTIVLIEHKMDMV 211
Cdd:PRK13651 152 VGLDES--YLQRspfELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK-TIILVTHDLDNV 228
|
250 260
....*....|....*....|....*....
gi 984812031 212 LGLSDHLIVLFHGELLAEGMPEEIMKDER 240
Cdd:PRK13651 229 LEWTKRTIFFKDGKIIKDGDTYDILSDNK 257
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
22-238 |
1.94e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 90.57 E-value: 1.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 22 DVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSI-----SDRTRLGIGRSFQLTNIFPElTV 96
Cdd:PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKnkdikQIRKKVGLVFQFPESQLFEE-TV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENVrlsvqsfvqdyySFFPSSAKFKQQVGEARRFLKTVLLQEKEHVLAK---DLAHGEKRKLELAMLLALKTDVLLLDE 173
Cdd:PRK13649 104 LKDV------------AFGPQNFGVSQEEAEALAREKLALVGISESLFEKnpfELSGGQMRRVAIAGILAMEPKILVLDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 174 PTAGISVEEVPAILQVIENIkKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:PRK13649 172 PTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-238 |
2.36e-21 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 92.37 E-value: 2.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG 80
Cdd:PRK10762 1 MQALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVRLSvQSFVQDYysffpSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAM 160
Cdd:PRK10762 81 IGIIHQELNLIPQLTIAENIFLG-REFVNRF-----GRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAK 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 161 LLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED 231
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
19-247 |
2.45e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 89.72 E-value: 2.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQIS------PTKGEVYFKGQEITKLSiSDRTRLGIGRSFQLTNIFP 92
Cdd:PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQID-AIKLRKEVGMVFQQPNPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 93 ELTVLENVRLSVQSfvqdyySFFPSSAKFKQQVGEARRflKTVLLQEKEHVL---AKDLAHGEKRKLELAMLLALKTDVL 169
Cdd:PRK14246 104 HLSIYDNIAYPLKS------HGIKEKREIKKIVEECLR--KVGLWKEVYDRLnspASQLSGGQQQRLTIARALALKPKVL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 170 LLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIM---KDERVQSAYL 246
Cdd:PRK14246 176 LMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFtspKNELTEKYVI 253
|
.
gi 984812031 247 G 247
Cdd:PRK14246 254 G 254
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-224 |
3.46e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 89.33 E-value: 3.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLF------NLLSGQISpTKGEVYFKGQEITKLSIS-DRT 77
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLkclnrmNELESEVR-VEGRVEFFNQNIYERRVNlNRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 78 RLGIGRSFQLTNIFPeLTVLENVRLSVQsfVQDYYSFFPSSAKFKQQVGEARRFLKtvlLQEKEHVLAKDLAHGEKRKLE 157
Cdd:PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVK--IVGWRPKLEIDDIVESALKDADLWDE---IKHKIHKSALDLSGGQQQRLC 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 158 LAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDhLIVLFHG 224
Cdd:PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD-FTAFFKG 226
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-237 |
4.88e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 89.30 E-value: 4.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSF--GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDrTR 78
Cdd:PRK13635 2 KEEIIRVEHISFRYpdAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWD-VR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 79 LGIGRSFQ-LTNIFPELTV-------LENV---RLSVQSFVQDYYsffpssakfkQQVGearrfLKTVLLQEKEHvlakd 147
Cdd:PRK13635 81 RQVGMVFQnPDNQFVGATVqddvafgLENIgvpREEMVERVDQAL----------RQVG-----MEDFLNREPHR----- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 148 LAHGEKRKLELAMLLALKTDVLLLDEPTA---GISVEEVpaiLQVIENIKKHPESTIVLIEHKMDMVLGlSDHLIVLFHG 224
Cdd:PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSmldPRGRREV---LETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKG 216
|
250
....*....|...
gi 984812031 225 ELLAEGMPEEIMK 237
Cdd:PRK13635 217 EILEEGTPEEIFK 229
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
20-238 |
5.70e-21 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 90.86 E-value: 5.70e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 20 IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLS---ISDRTRLGIGRSFQLTNIFPELTV 96
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISdaeLREVRRKKIAMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENVRLSVQSfvqdyysffpSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTA 176
Cdd:PRK10070 124 LDNTAFGMEL----------AGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 984812031 177 GISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-235 |
6.98e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 89.02 E-value: 6.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFG---EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRT 77
Cdd:PRK13650 1 MSNIIEVKNLTFKYKedqEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 78 RLgIGRSFQ-LTNIFPELTVLENVRLSVQSFVQDYysffpssAKFKQQVGEARRFLKTVLLQEKEhvlAKDLAHGEKRKL 156
Cdd:PRK13650 81 HK-IGMVFQnPDNQFVGATVEDDVAFGLENKGIPH-------EEMKERVNEALELVGMQDFKERE---PARLSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVlGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPREL 227
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
5-221 |
7.74e-21 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 91.19 E-value: 7.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSF-GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtRLGIGR 83
Cdd:TIGR02857 322 LEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW-RDQIAW 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPElTVLENVRLS--------VQSFVQDyysffpssAKFKQQVGEARRFLKTVLlqeKEHvlAKDLAHGEKRK 155
Cdd:TIGR02857 401 VPQHPFLFAG-TIAENIRLArpdasdaeIREALER--------AGLDEFVAALPQGLDTPI---GEG--GAGLSGGQAQR 466
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVE-EVpailQVIENIKKHPES-TIVLIEHKmDMVLGLSDHLIVL 221
Cdd:TIGR02857 467 LALARAFLRDAPLLLLDEPTAHLDAEtEA----EVLEALRALAQGrTVLLVTHR-LALAALADRIVVL 529
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
8-245 |
7.97e-21 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 88.69 E-value: 7.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 8 KNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRlgigRSFQL 87
Cdd:PRK10575 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR----KVAYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 88 TNIFPE---LTVLENVRLSvqsfvqdYYSFFPSSAKF----KQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAM 160
Cdd:PRK10575 91 PQQLPAaegMTVRELVAIG-------RYPWHGALGRFgaadREKVEEA---ISLVGLKPLAHRLVDSLSGGERQRAWIAM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 161 LLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDER 240
Cdd:PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGET 240
|
....*
gi 984812031 241 VQSAY 245
Cdd:PRK10575 241 LEQIY 245
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
5-235 |
8.43e-21 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 91.02 E-value: 8.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSG--QISPTKGEVY-------------------- 62
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdQYEPTSGRIIyhvalcekcgyverpskvge 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 63 --------FKGQEITKLSISDRTRLGIGRS----FQLT-NIFPELTVLENVrlsVQSFVQDYYsffpssaKFKQQVGEAR 129
Cdd:TIGR03269 81 pcpvcggtLEPEEVDFWNLSDKLRRRIRKRiaimLQRTfALYGDDTVLDNV---LEALEEIGY-------EGKEAVGRAV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 130 RFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMD 209
Cdd:TIGR03269 151 DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230
|
250 260
....*....|....*....|....*.
gi 984812031 210 MVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEV 256
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-192 |
1.24e-20 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 90.38 E-value: 1.24e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKgqEITKLSISDRTRLGIGRS 84
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIG--ETVKLAYVDQSRDALDPN 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 fqlTNIFPELT----VLENVRLSVQSfvQDYYSFFpssaKFKQQVgearrflktvllQEKehvLAKDLAHGEKRKLELAM 160
Cdd:TIGR03719 401 ---KTVWEEISggldIIKLGKREIPS--RAYVGRF----NFKGSD------------QQK---KVGQLSGGERNRVHLAK 456
|
170 180 190
....*....|....*....|....*....|..
gi 984812031 161 LLALKTDVLLLDEPTAGISVEEVPAILQVIEN 192
Cdd:TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLN 488
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
4-221 |
1.32e-20 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 90.23 E-value: 1.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGqISPT---KGEVYFKGQEITKLSISDRTRLG 80
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSG-VYPHgsyEGEILFDGEVCRFKDIRDSEALG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVRLS---VQSFVQDYysffpssakfKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLE 157
Cdd:NF040905 80 IVIIHQELALIPYLSIAENIFLGnerAKRGVIDW----------NETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVE 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 984812031 158 LAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIvLIEHKMDMVLGLSDHLIVL 221
Cdd:NF040905 150 IAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSI-IISHKLNEIRRVADSITVL 212
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1-228 |
1.89e-20 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 89.97 E-value: 1.89e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG 80
Cdd:PRK11288 1 SSPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVrlsvqsfvqdYYSFFPSSAKF---KQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLE 157
Cdd:PRK11288 81 VAIIYQELHLVPEMTVAENL----------YLGQLPHKGGIvnrRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVE 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 984812031 158 LAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVL-IEHKMDMVLGLSDHLIVLFHGELLA 228
Cdd:PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA--EGRVILyVSHRMEEIFALCDAITVFKDGRYVA 220
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
20-247 |
2.57e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 87.35 E-value: 2.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 20 IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGRSFQltniFPELTVlen 99
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQ----NPETQF--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 100 vrlsVQSFVQDYYSFFPSS-----AKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEP 174
Cdd:PRK13644 91 ----VGRTVEEDLAFGPENlclppIEIRKRVDRA---LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEV 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 175 TAGISVEEVPAILqviENIKKHPE--STIVLIEHKMDMvLGLSDHLIVLFHGELLAEGMPEEIMKDERVQsaYLG 247
Cdd:PRK13644 164 TSMLDPDSGIAVL---ERIKKLHEkgKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDVSLQ--TLG 232
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
19-177 |
2.59e-20 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 86.17 E-value: 2.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQI---SPTKGEVYFKGQEITKLSISDRTrlgigrSF--QLTNIFPE 93
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVeggGTTSGQILFNGQPRKPDQFQKCV------AYvrQDDILLPG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 94 LTVLENVRLSVQSFVQDyysffPSSAKFKQQVGEARRfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDE 173
Cdd:cd03234 96 LTVRETLTYTAILRLPR-----KSSDAIRKKRVEDVL-LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDE 169
|
....
gi 984812031 174 PTAG 177
Cdd:cd03234 170 PTSG 173
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
4-206 |
2.73e-20 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 86.62 E-value: 2.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQ--ISPTKGEVYFKGQEITKLSISDRTRLGI 81
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHpaYKILEGDILFKGESILDLEPEERAHLGI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 GRSFQLTNIFPELTVLENVRLSvqsfvqdyysfFPSSAKFKQQVG-EARRFLKTV-----LLQEKEHVLAKDL----AHG 151
Cdd:CHL00131 87 FLAFQYPIEIPGVSNADFLRLA-----------YNSKRKFQGLPElDPLEFLEIIneklkLVGMDPSFLSRNVnegfSGG 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 152 EKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhPESTIVLIEH 206
Cdd:CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITH 209
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
12-250 |
2.84e-20 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 89.45 E-value: 2.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 12 VSF---GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD-RTRLGIgrSFQL 87
Cdd:COG1132 345 VSFsypGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESlRRQIGV--VPQD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 88 TNIFpELTVLENVRL-----------------SVQSFVQDyysfFPssAKFKQQVGEArrflktvllqekehvlAKDLAH 150
Cdd:COG1132 423 TFLF-SGTIRENIRYgrpdatdeeveeaakaaQAHEFIEA----LP--DGYDTVVGER----------------GVNLSG 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 151 GEKRKLELAMLLALKTDVLLLDEPTAGISVE-EVpAILQVIENIKKHpeSTIVLIEHKMDMVLGlSDHLIVLFHGELLAE 229
Cdd:COG1132 480 GQRQRIAIARALLKDPPILILDEATSALDTEtEA-LIQEALERLMKG--RTTIVIAHRLSTIRN-ADRILVLDDGRIVEQ 555
|
250 260
....*....|....*....|.
gi 984812031 230 GMPEEIMKdervqsayLGGLY 250
Cdd:COG1132 556 GTHEELLA--------RGGLY 568
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
16-243 |
5.01e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 86.99 E-value: 5.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 16 EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEV----YFKGQEITKLSISDRTRLGIGRSFQltniF 91
Cdd:PRK13645 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTivgdYAIPANLKKIKEVKRLRKEIGLVFQ----F 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 92 PELTVLenvrlsvQSFVQDYYSFFPSS-AKFKQQV-GEARRFLKTVLLQEkEHVLAK--DLAHGEKRKLELAMLLALKTD 167
Cdd:PRK13645 99 PEYQLF-------QETIEKDIAFGPVNlGENKQEAyKKVPELLKLVQLPE-DYVKRSpfELSGGQKRRVALAGIIAMDGN 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 168 VLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDERVQS 243
Cdd:PRK13645 171 TLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLT 246
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
5-183 |
6.85e-20 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 84.33 E-value: 6.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKL-SISDRTRLGIGr 83
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQrDEPHENILYLG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 sfQLTNIFPELTVLENVRlsvqsfvqdYYSFFPSSAkfKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLA 163
Cdd:TIGR01189 80 --HLPGLKPELSALENLH---------FWAAIHGGA--QRTIEDA---LAAVGLTGFEDLPAAQLSAGQQRRLALARLWL 143
|
170 180
....*....|....*....|
gi 984812031 164 LKTDVLLLDEPTAGISVEEV 183
Cdd:TIGR01189 144 SRRPLWILDEPTTALDKAGV 163
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
5-225 |
8.25e-20 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 82.88 E-value: 8.25e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVyfkgqeitklSISDRTRLGigrs 84
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV----------TWGSTVKIG---- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 fqltnifpeltvlenvrlsvqsfvqdYYSffpssakfkQQVGearrflktvllqekehvlakdlahGEKRKLELAMLLAL 164
Cdd:cd03221 67 --------------------------YFE---------QLSG------------------------GEKMRLALAKLLLE 87
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 984812031 165 KTDVLLLDEPTAGISVEevpAILQVIENIKKHPeSTIVLIEHKMDMVLGLSDHLIVLFHGE 225
Cdd:cd03221 88 NPNLLLLDEPTNHLDLE---SIEALEEALKEYP-GTVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
5-226 |
1.68e-19 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 82.65 E-value: 1.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFG--EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLsisDRTRLG-- 80
Cdd:cd03246 1 LEVENVSFRYPgaEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW---DPNELGdh 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPElTVLENVRlsvqsfvqdyysffpsSAKFKQQVGEARRFLKtvllqekehvlakdlahgeKRKLelam 160
Cdd:cd03246 78 VGYLPQDDELFSG-SIAENIL----------------SGGQRQRLGLARALYG-------------------NPRI---- 117
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 161 llalktdvLLLDEPTAGISVEEVPAILQVIENIKKHPeSTIVLIEHKMDmVLGLSDHLIVLFHGEL 226
Cdd:cd03246 118 --------LVLDEPNSHLDVEGERALNQAIAALKAAG-ATRIVIAHRPE-TLASADRILVLEDGRV 173
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-243 |
1.79e-19 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 87.03 E-value: 1.79e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG 80
Cdd:PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTVLENVRLSVqsfvqdyysffPSSAKFKQQVgearrflkTVLLQE-----KEHVLAKDLAHGEKRK 155
Cdd:PRK15439 88 IYLVPQEPLLFPNLSVKENILFGL-----------PKRQASMQKM--------KQLLAAlgcqlDLDSSAGSLEVADRQI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPEStIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:PRK15439 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVG-IVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
....*...
gi 984812031 236 MKDERVQS 243
Cdd:PRK15439 228 STDDIIQA 235
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
5-188 |
1.91e-19 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 83.31 E-value: 1.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEItklsisDRTRLGIGRS 84
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL------DFQRDSIARG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 F----QLTNIFPELTVLENVRlsvqsFVQDYYSffpssakfKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAM 160
Cdd:cd03231 75 LlylgHAPGIKTTLSVLENLR-----FWHADHS--------DEQVEEA---LARVGLNGFEDRPVAQLSAGQQRRVALAR 138
|
170 180
....*....|....*....|....*...
gi 984812031 161 LLALKTDVLLLDEPTAGISVEEVPAILQ 188
Cdd:cd03231 139 LLLSGRPLWILDEPTTALDKAGVARFAE 166
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
23-232 |
2.08e-19 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 87.38 E-value: 2.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 23 VNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEI-TKLsisDRTRLGIGRSFQLTNIFPELTVLENVR 101
Cdd:TIGR01257 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIeTNL---DAVRQSLGMCPQHNILFHHLTVAEHIL 1025
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 102 lsvqsfvqdYYSFFPSSAKFKQQVgEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVE 181
Cdd:TIGR01257 1026 ---------FYAQLKGRSWEEAQL-EMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPY 1095
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 984812031 182 EVPAILQVIenIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMP 232
Cdd:TIGR01257 1096 SRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
17-247 |
2.18e-19 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 83.86 E-value: 2.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 17 HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTrlgIGRSFQLTNIFPELTV 96
Cdd:PRK10771 12 HHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP---VSMLFQENNLFSHLTV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENVRLSVQsfvqdyysffPSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTA 176
Cdd:PRK10771 89 AQNIGLGLN----------PGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFS 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 177 GISveevPA----ILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDERVQSAYLG 247
Cdd:PRK10771 159 ALD----PAlrqeMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLG 229
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-181 |
3.27e-19 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 86.33 E-value: 3.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVyfKGQEITKLSISDRTRLGIGrs 84
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI--KIGETVKLAYVDQSRDALD-- 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 fqltnifPELTVLENVrlsvqSFVQDYYSF----FPSSA-----KFK---QQvgearrflKTVllqekehvlaKDLAHGE 152
Cdd:PRK11819 401 -------PNKTVWEEI-----SGGLDIIKVgnreIPSRAyvgrfNFKggdQQ--------KKV----------GVLSGGE 450
|
170 180
....*....|....*....|....*....
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGISVE 181
Cdd:PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVE 479
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
16-230 |
3.41e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 84.75 E-value: 3.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 16 EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGI--G-RSfQLtniFP 92
Cdd:COG4586 34 EVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFKRRKEFARRIGVvfGqRS-QL---WW 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 93 ELTVLENVRLsvqsfVQDYYSFfpSSAKFKQQVGEarrfLKTVL-LQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLL 171
Cdd:COG4586 110 DLPAIDSFRL-----LKAIYRI--PDAEYKKRLDE----LVELLdLGELLDTPVRQLSLGQRMRCELAAALLHRPKILFL 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 172 DEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:COG4586 179 DEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDG 237
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
12-251 |
5.31e-19 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 83.05 E-value: 5.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 12 VSFGEH---HVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSIsDRTRLGIGRSFQLT 88
Cdd:cd03253 6 VTFAYDpgrPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL-DSLRRAIGVVPQDT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 89 NIFPElTVLENV---RLSV----------QSFVQDYYSFFPSsaKFKQQVGEarRFLKtvllqekehvlakdLAHGEKRK 155
Cdd:cd03253 85 VLFND-TIGYNIrygRPDAtdeevieaakAAQIHDKIMRFPD--GYDTIVGE--RGLK--------------LSGGEKQR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpeSTIVLIEHKMDMVLGlSDHLIVLFHGELLAEGMPEEI 235
Cdd:cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKG--RTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL 222
|
250
....*....|....*.
gi 984812031 236 MKDervqsaylGGLYS 251
Cdd:cd03253 223 LAK--------GGLYA 230
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-237 |
5.85e-19 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 85.46 E-value: 5.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVsfgeHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIG- 82
Cdd:COG1129 256 VLEVEGLSV----GGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDAIRAGIAy 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 ----RsfQLTNIFPELTVLENVRLSvqsfVQDYYSFFP--SSAKFKQQVGEARRFL--KTVLLqekeHVLAKDLAHGEKR 154
Cdd:COG1129 332 vpedR--KGEGLVLDLSIRENITLA----SLDRLSRGGllDRRRERALAEEYIKRLriKTPSP----EQPVGNLSGGNQQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 155 KLELAMLLALKTDVLLLDEPTAGISV---EEvpaILQVIENIKKhpE-STIVLIEHKMDMVLGLSDHLIVLFHG----EL 226
Cdd:COG1129 402 KVVLAKWLATDPKVLILDEPTRGIDVgakAE---IYRLIRELAA--EgKAVIVISSELPELLGLSDRILVMREGrivgEL 476
|
250
....*....|..
gi 984812031 227 LAEGM-PEEIMK 237
Cdd:COG1129 477 DREEAtEEAIMA 488
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
5-239 |
1.73e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 82.54 E-value: 1.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSF--GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISP---TKGEVYFKGQEITKLSISD-RTR 78
Cdd:PRK13640 6 VEFKHVSFTYpdSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPddnPNSKITVDGITLTAKTVWDiREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 79 LGIgrSFQ-LTNIFPELTVLENVRLSVQSfvqdyysffpSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLE 157
Cdd:PRK13640 86 VGI--VFQnPDNQFVGATVGDDVAFGLEN----------RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 158 LAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVlGLSDHLIVLFHGELLAEGMPEEIMK 237
Cdd:PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFS 232
|
..
gi 984812031 238 DE 239
Cdd:PRK13640 233 KV 234
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
8-235 |
1.82e-18 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 83.54 E-value: 1.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 8 KNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtrlGIGRSFQL 87
Cdd:PRK11000 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAER---GVGMVFQS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 88 TNIFPELTVLENVrlsvqsfvqdyySFFPSSAKFK-----QQVGEARRFLKTV-LLQEKehvlAKDLAHGEKRKLELAML 161
Cdd:PRK11000 84 YALYPHLSVAENM------------SFGLKLAGAKkeeinQRVNQVAEVLQLAhLLDRK----PKALSGGQRQRVAIGRT 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 162 LALKTDVLLLDEPTAGISveevpAILQV-----IENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:PRK11000 148 LVAEPSVFLLDEPLSNLD-----AALRVqmrieISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
4-230 |
1.85e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 82.14 E-value: 1.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTL---FNLLSGQISPTK--GEVYFKGQEITKLSISD-RT 77
Cdd:PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTIlrcFNRLNDLIPGFRveGKVTFHGKNLYAPDVDPvEV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 78 RLGIGRSFQLTNIFPElTVLENVrlsvqsfvqdyySFFPSSAKFKQQVGE-ARRFLKTVLL----QEKEHVLAKDLAHGE 152
Cdd:PRK14243 90 RRRIGMVFQKPNPFPK-SIYDNI------------AYGARINGYKGDMDElVERSLRQAALwdevKDKLKQSGLSLSGGQ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGLSDhLIVLFHGELLAEG 230
Cdd:PRK14243 157 QQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSD-MTAFFNVELTEGG 231
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
29-225 |
2.06e-18 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 81.69 E-value: 2.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 29 KGKLISIIGPNGAGKTTLFNLLSGQISPTKGE-------VYFKGQEITKlsisdrtrlgigrSFQLTnifpeltvlenVR 101
Cdd:cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDieieldtVSYKPQYIKA-------------DYEGT-----------VR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 102 LSVQSFVQDYYSffpsSAKFKQQVGEArrfLKTVLLQEKEhvlAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVE 181
Cdd:cd03237 80 DLLSSITKDFYT----HPYFKTEIAKP---LQIEQILDRE---VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 984812031 182 EVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVlFHGE 225
Cdd:cd03237 150 QRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV-FEGE 192
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-233 |
2.33e-18 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 81.70 E-value: 2.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGevyfkgqeitklSISDRTRLG 80
Cdd:PRK09544 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG------------VIKRNGKLR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTNIFPELTvlenvrLSVQSFVQdyysFFPSSAkfKQQVGEArrfLKTVllqEKEHVL---AKDLAHGEKRKLE 157
Cdd:PRK09544 69 IGYVPQKLYLDTTLP------LTVNRFLR----LRPGTK--KEDILPA---LKRV---QAGHLIdapMQKLSGGETQRVL 130
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 158 LAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHgELLAEGMPE 233
Cdd:PRK09544 131 LARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPE 205
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
9-230 |
2.45e-18 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 80.80 E-value: 2.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 9 NLSVSFGEHHviKDVNLIVQ---KGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEI----TKLSISDRTRlGI 81
Cdd:cd03297 1 MLCVDIEKRL--PDFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLfdsrKKINLPPQQR-KI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 GRSFQLTNIFPELTVLENVrlsvqsfvqDYYSFFPSSAKFKQQVGEarrFLKTVLLQEKEHVLAKDLAHGEKRKLELAML 161
Cdd:cd03297 78 GLVFQQYALFPHLNVRENL---------AFGLKRKRNREDRISVDE---LLDLLGLDHLLNRYPAQLSGGEKQRVALARA 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 162 LALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
4-235 |
7.15e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 80.20 E-value: 7.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLS--GQISP---TKGEVYFKGQEItklsISDRT- 77
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDLNPevtITGSIVYNGHNI----YSPRTd 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 78 ----RLGIGRSFQLTNIFPeLTVLENVrlsvqsfvqdYYSFFPSSAKFKQQVGEA-RRFLKTVLL----QEKEHVLAKDL 148
Cdd:PRK14239 81 tvdlRKEIGMVFQQPNPFP-MSIYENV----------VYGLRLKGIKDKQVLDEAvEKSLKGASIwdevKDRLHDSALGL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 149 AHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGLSDHLIVLFHGELLA 228
Cdd:PRK14239 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227
|
....*..
gi 984812031 229 EGMPEEI 235
Cdd:PRK14239 228 YNDTKQM 234
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
5-206 |
8.38e-18 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 82.41 E-value: 8.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSF-GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIGR 83
Cdd:TIGR02868 335 LELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR-VSV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFpELTVLENVRLSVQSFVQDyysffpssakfkqqvgEARRFLKTV----LLQEKEHVL-------AKDLAHGE 152
Cdd:TIGR02868 414 CAQDAHLF-DTTVRENLRLARPDATDE----------------ELWAALERVgladWLRALPDGLdtvlgegGARLSGGE 476
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIenIKKHPESTIVLIEH 206
Cdd:TIGR02868 477 RQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITH 528
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
4-174 |
1.38e-17 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 79.36 E-value: 1.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSiSDRtrlgiGR 83
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG-AER-----GV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENVRLSVQSfvqdyysffpSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLA 163
Cdd:PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQL----------AGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALA 144
|
170
....*....|.
gi 984812031 164 LKTDVLLLDEP 174
Cdd:PRK11248 145 ANPQLLLLDEP 155
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
5-230 |
1.55e-17 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 78.90 E-value: 1.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTL---FNLL----SGQISPTKGEVYFKGQ----EITKLsi 73
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLlrvLNLLemprSGTLNIAGNHFDFSKTpsdkAIREL-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 74 sdrtRLGIGRSFQLTNIFPELTVLENV---RLSVQSFVQDyysffpssakfkQQVGEARRFLKTVLLQEKEHVLAKDLAH 150
Cdd:PRK11124 81 ----RRNVGMVFQQYNLWPHLTVQQNLieaPCRVLGLSKD------------QALARAEKLLERLRLKPYADRFPLHLSG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 151 GEKRKLELAMLLALKTDVLLLDEPTAGISveevPAIL-QVIENIKKHPESTI--VLIEHKMDMVLGLSDHLIVLFHGELL 227
Cdd:PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALD----PEITaQIVSIIRELAETGItqVIVTHEVEVARKTASRVVYMENGHIV 220
|
...
gi 984812031 228 AEG 230
Cdd:PRK11124 221 EQG 223
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
4-230 |
2.11e-17 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 78.68 E-value: 2.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSG--QISPTKGEVYFKGQEITKLSISDRTRLGI 81
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGreDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 GRSFQ-------LTNIFPELTVLENVRLSVQSFVQDYYSFfpssAKFKQQvgearrflKTVLLQEKEHVLAKDL----AH 150
Cdd:PRK09580 81 FMAFQypveipgVSNQFFLQTALNAVRSYRGQEPLDRFDF----QDLMEE--------KIALLKMPEDLLTRSVnvgfSG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 151 GEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-235 |
3.50e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 78.98 E-value: 3.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLI---VQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRT 77
Cdd:PRK13642 1 MNKILEVENLVFKYEKESDVNQLNGVsfsITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 78 RlGIGRSFQ-LTNIFPELTVLENVRLSVQSfvqdyySFFPSSAKFKQqVGEArrFLKTVLLQEKEHVLAKdLAHGEKRKL 156
Cdd:PRK13642 81 R-KIGMVFQnPDNQFVGATVEDDVAFGMEN------QGIPREEMIKR-VDEA--LLAVNMLDFKTREPAR-LSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGlSDHLIVLFHGELLAEGMPEEI 235
Cdd:PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
4-206 |
7.48e-17 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 77.13 E-value: 7.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNL--SVSFGEHH--VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRL 79
Cdd:PRK10584 6 IVEVHHLkkSVGQGEHElsILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 ---GIGRSFQLTNIFPELTVLENVRLSVqsfvqdyysfFPSSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKL 156
Cdd:PRK10584 86 rakHVGFVFQSFMLIPTLNALENVELPA----------LLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRV 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEH 206
Cdd:PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-239 |
8.61e-17 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 79.30 E-value: 8.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSV-SFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIG 82
Cdd:COG3845 257 VLEVENLSVrDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGVA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 -----RsfQLTNIFPELTVLENVRLsvqsfvqDYYSFFPSSAKFKQQVGEARRFLKTVLlqEK-------EHVLAKDLAH 150
Cdd:COG3845 337 yipedR--LGRGLVPDMSVAENLIL-------GRYRRPPFSRGGFLDRKAIRAFAEELI--EEfdvrtpgPDTPARSLSG 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 151 GEKRKLELAMLLALKTDVLLLDEPTAGIsveEVPAILQVIENIKKHPES--TIVLIEHKMDMVLGLSDHLIVLFHGELLA 228
Cdd:COG3845 406 GNQQKVILARELSRDPKLLIAAQPTRGL---DVGAIEFIHQRLLELRDAgaAVLLISEDLDEILALSDRIAVMYEGRIVG 482
|
250
....*....|.
gi 984812031 229 EGMPEEIMKDE 239
Cdd:COG3845 483 EVPAAEATREE 493
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-188 |
1.22e-16 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 79.00 E-value: 1.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSF--GEHH--VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDR 76
Cdd:PRK10535 1 MTALLELKDIRRSYpsGEEQveVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 77 TRL---GIGRSFQLTNIFPELTVLENVRLSvqsfvqdyySFFPSSAKfKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEK 153
Cdd:PRK10535 81 AQLrreHFGFIFQRYHLLSHLTAAQNVEVP---------AVYAGLER-KQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQ 150
|
170 180 190
....*....|....*....|....*....|....*...
gi 984812031 154 RKLELAMLLALKTDVLLLDEPTAGI---SVEEVPAILQ 188
Cdd:PRK10535 151 QRVSIARALMNGGQVILADEPTGALdshSGEEVMAILH 188
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
27-225 |
1.22e-16 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 79.06 E-value: 1.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 27 VQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVyfkgqeITKLSISDRTrlgigrsfQLTNIFPELTVLENVRlsvqs 106
Cdd:COG1245 363 IREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV------DEDLKISYKP--------QYISPDYDGTVEEFLR----- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 107 fvQDYYSFFPSSaKFKQQVgeARRF-LKTVLLQEkehvlAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPA 185
Cdd:COG1245 424 --SANTDDFGSS-YYKTEI--IKPLgLEKLLDKN-----VKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLA 493
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 984812031 186 ILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVlFHGE 225
Cdd:COG1245 494 VAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV-FEGE 532
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
6-206 |
1.95e-16 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 78.45 E-value: 1.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKgqeiTKLSIS--DRTRlgigr 83
Cdd:PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG----TKLEVAyfDQHR----- 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 sfqlTNIFPELTVLENVrlsvqsfvqdyysffpssAKFKQQV---GEARR---FLKTVLLQEKEHVL-AKDLAHGEKRKL 156
Cdd:PRK11147 392 ----AELDPEKTVMDNL------------------AEGKQEVmvnGRPRHvlgYLQDFLFHPKRAMTpVKALSGGERNRL 449
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISVEevpaILQVIENIKKHPESTIVLIEH 206
Cdd:PRK11147 450 LLARLFLKPSNLLILDEPTNDLDVE----TLELLEELLDSYQGTVLLVSH 495
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-235 |
3.03e-16 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 77.97 E-value: 3.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHH----VIKDVNLIVQKGKLISIIGPNGAGKT----TLFNLL---SGQISPTKGEVYFKGQEITKLS 72
Cdd:PRK10261 12 VLAVENLNIAFMQEQqkiaAVRNLSFSLQRGETLAIVGESGSGKSvtalALMRLLeqaGGLVQCDKMLLRRRSRQVIELS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 73 ISDRTRL------GIGRSFQ--LTNIFPELTVLENVRLSVQsfvqdyysfFPSSAKFKQQVGEARRFLKTVLLQEKEHVL 144
Cdd:PRK10261 92 EQSAAQMrhvrgaDMAMIFQepMTSLNPVFTVGEQIAESIR---------LHQGASREEAMVEAKRMLDQVRIPEAQTIL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 145 AK---DLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVL 221
Cdd:PRK10261 163 SRyphQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242
|
250
....*....|....
gi 984812031 222 FHGELLAEGMPEEI 235
Cdd:PRK10261 243 YQGEAVETGSVEQI 256
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
5-230 |
4.02e-16 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 73.89 E-value: 4.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGE--HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSisdrtrlgig 82
Cdd:cd03247 1 LSINNVSFSYPEqeQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 rsfqltnifpeltvlENVRLSVQSFVQDYYSFfpsSAKFKQQVGeaRRFlktvllqekehvlakdlAHGEKRKLELAMLL 162
Cdd:cd03247 71 ---------------KALSSLISVLNQRPYLF---DTTLRNNLG--RRF-----------------SGGERQRLALARIL 113
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMdmvLGLS--DHLIVLFHGELLAEG 230
Cdd:cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIWITHHL---TGIEhmDKILFLENGKIIMQG 178
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
4-217 |
4.06e-16 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 74.60 E-value: 4.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG-IG 82
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCfVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSfqlTNIFPELTVLENVrlsvqsfvqdYYSFFPSSAKFkqQVGEARRFLKTvllqekEHVL---AKDLAHGEKRKLELA 159
Cdd:PRK13540 81 HR---SGINPYLTLRENC----------LYDIHFSPGAV--GITELCRLFSL------EHLIdypCGLLSSGQKRQVALL 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 160 MLLALKTDVLLLDEPTagISVEEVpAILQVIENIKKH-PESTIVLIEHKMDMVLGLSDH 217
Cdd:PRK13540 140 RLWMSKAKLWLLDEPL--VALDEL-SLLTIITKIQEHrAKGGAVLLTSHQDLPLNKADY 195
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
5-232 |
6.97e-16 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 74.07 E-value: 6.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHH--VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD-RTRLGi 81
Cdd:cd03244 3 IEFKNVSLRYRPNLppVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDlRSRIS- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 grsfqltnIFPELTVLEN--VRLSVQSFvqDYYSffpssakfkqqVGEARRFLKTVLLqeKEHVLAKD------------ 147
Cdd:cd03244 82 --------IIPQDPVLFSgtIRSNLDPF--GEYS-----------DEELWQALERVGL--KEFVESLPggldtvveegge 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 148 -LAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENikKHPESTIVLIEHKMDMVLGlSDHLIVLFHGEL 226
Cdd:cd03244 139 nLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE--AFKDCTVLTIAHRLDTIID-SDRILVLDKGRV 215
|
....*.
gi 984812031 227 LAEGMP 232
Cdd:cd03244 216 VEFDSP 221
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
9-249 |
1.29e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 74.36 E-value: 1.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 9 NLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLF---NLLSGQISPTK--GEVYFKGQEITKLSISDRTRLGIGR 83
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLrtlNRMNDKVSGYRysGDVLLGGRSIFNYRDVLEFRRRVGM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPeLTVLENVRLSVQSfvqdyYSFFPSsakfKQQVGEARRFLKTVLLQEKEHVLAKD----LAHGEKRKLELA 159
Cdd:PRK14271 106 LFQRPNPFP-MSIMDNVLAGVRA-----HKLVPR----KEFRGVAQARLTEVGLWDAVKDRLSDspfrLSGGQQQLLCLA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 160 MLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDE 239
Cdd:PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253
|
250
....*....|..
gi 984812031 240 R-VQSA-YLGGL 249
Cdd:PRK14271 254 KhAETArYVAGL 265
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
13-221 |
1.31e-15 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 72.65 E-value: 1.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 13 SFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGqeitklsiSDRTRLGIGRSfQLTNIFP 92
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG--------GARVAYVPQRS-EVPDSLP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 93 eLTVLENVRLSvqsfvqdyysFFPSSAKFKQQVGEARRFLKTVLlqekEHVLAKDLAH--------GEKRKLELAMLLAL 164
Cdd:NF040873 72 -LTVRDLVAMG----------RWARRGLWRRLTRDDRAAVDDAL----ERVGLADLAGrqlgelsgGQRQRALLAQGLAQ 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIkkHPES-TIVLIEHKMDMVLgLSDHLIVL 221
Cdd:NF040873 137 EADLLLLDEPTTGLDAESRERIIALLAEE--HARGaTVVVVTHDLELVR-RADPCVLL 191
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
4-225 |
2.00e-15 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 75.23 E-value: 2.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGehhvikDVNLIVQKGKL-----ISIIGPNGAGKTTLFNLLSGQISPTKGEVY------FKGQEITkls 72
Cdd:PRK13409 340 LVEYPDLTKKLG------DFSLEVEGGEIyegevIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDpelkisYKPQYIK--- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 73 iSDrtrlgigrsfqltnifPELTVLENVRLSVQSFvqdyysffpSSAKFKQQVgeARRFLKTVLLQEKehvlAKDLAHGE 152
Cdd:PRK13409 411 -PD----------------YDGTVEDLLRSITDDL---------GSSYYKSEI--IKPLQLERLLDKN----VKDLSGGE 458
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVlFHGE 225
Cdd:PRK13409 459 LQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV-FEGE 530
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
5-236 |
2.71e-15 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 75.14 E-value: 2.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHH-VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISdRTRLGIGR 83
Cdd:PRK10790 341 IDIDNVSFAYRDDNlVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS-VLRQGVAM 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPElTVLENVRLSvqsfvQDYYsffpssakfKQQVGEArrfLKTVLLQEKEHVL-----------AKDLAHGE 152
Cdd:PRK10790 420 VQQDPVVLAD-TFLANVTLG-----RDIS---------EEQVWQA---LETVQLAELARSLpdglytplgeqGNNLSVGQ 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpeSTIVLIEHKMDMVLGlSDHLIVLFHGELLAEGMP 232
Cdd:PRK10790 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTH 558
|
....
gi 984812031 233 EEIM 236
Cdd:PRK10790 559 QQLL 562
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-236 |
3.42e-15 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 72.90 E-value: 3.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVS-------FGEHHV--IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQeitKL 71
Cdd:PRK15112 1 VETLLEVRNLSKTfryrtgwFRRQTVeaVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDH---PL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 72 SISDRTRlgigRSFQLTNIFPELTVLENVRLSVQSFVQdyysfFP-------SSAKFKQQVGEARRflKTVLLQEKEHVL 144
Cdd:PRK15112 78 HFGDYSY----RSQRIRMIFQDPSTSLNPRQRISQILD-----FPlrlntdlEPEQREKQIIETLR--QVGLLPDHASYY 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 145 AKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQV-IENIKKHPESTIVLIEHkMDMVLGLSDHLIVLFH 223
Cdd:PRK15112 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLmLELQEKQGISYIYVTQH-LGMMKHISDQVLVMHQ 225
|
250
....*....|...
gi 984812031 224 GELLAEGMPEEIM 236
Cdd:PRK15112 226 GEVVERGSTADVL 238
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
5-226 |
3.67e-15 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 72.79 E-value: 3.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVyFKGQeiTKLS-ISDRTRLgigr 83
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGT--APLAeAREDTRL---- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENVRLSVqsfvqdyysffpsSAKFKQQvgeARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLA 163
Cdd:PRK11247 86 MFQDARLLPWKKVIDNVGLGL-------------KGQWRDA---ALQALAAVGLADRANEWPAALSGGQKQRVALARALI 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984812031 164 LKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
9-238 |
3.69e-15 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 73.98 E-value: 3.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 9 NLSVSFGEHHVikDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQeiTKLSISDRTRL-----GIGR 83
Cdd:COG4148 6 DFRLRRGGFTL--DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGE--VLQDSARGIFLpphrrRIGY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENVRlsvqsfvqdYysffpsSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAH---GEKRKLELAM 160
Cdd:COG4148 82 VFQEARLFPHLSVRGNLL---------Y------GRKRAPRAERRISFDEVVELLGIGHLLDRRPATlsgGERQRVAIGR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 161 LLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:COG4148 147 ALLSSPRLLLMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSR 224
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
5-219 |
5.04e-15 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 74.16 E-value: 5.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVyfkgqeitKLSisdrtrlgigrs 84
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV--------KWS------------ 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 fqltnifpeltvlENVrlSVQSFVQDYYSFFPSS-------AKFKQQVGE---ARRFLKTVLLQEKE-HVLAKDLAHGEK 153
Cdd:PRK15064 380 -------------ENA--NIGYYAQDHAYDFENDltlfdwmSQWRQEGDDeqaVRGTLGRLLFSQDDiKKSVKVLSGGEK 444
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 154 RKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIkkhpESTIVLIEHKMDMVLGLSDHLI 219
Cdd:PRK15064 445 GRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRII 506
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
21-245 |
7.26e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 73.55 E-value: 7.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 21 KDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGI---GRSFQLTNIFPELTVL 97
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLvylPEDRQSSGLYLDAPLA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 98 ENvrlsVQSFVQDYYSFFPSSAKFKQQVGEARRFLKTVLLQEKEHVlaKDLAHGEKRKLELAMLLALKTDVLLLDEPTAG 177
Cdd:PRK15439 360 WN----VCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA--RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRG 433
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 178 ISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDERVQSAY 245
Cdd:PRK15439 434 VDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAF 500
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
1-244 |
9.77e-15 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 73.22 E-value: 9.77e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEH---HVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEI--------- 68
Cdd:TIGR00958 475 LEGLIEFQDVSFSYPNRpdvPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLvqydhhylh 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 69 TKLSISDRTRLGIGRSFQlTNIFPELTVLENVRL---SVQSFVQDYYSFFPSSakFKQQVGEARRFlktvllqekehvla 145
Cdd:TIGR00958 555 RQVALVGQEPVLFSGSVR-ENIAYGLTDTPDEEImaaAKAANAHDFIMEFPNG--YDTEVGEKGSQ-------------- 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 146 kdLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEevpaILQVIENIKKHPESTIVLIEHKMDMVLGlSDHLIVLFHGE 225
Cdd:TIGR00958 618 --LSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGS 690
|
250
....*....|....*....
gi 984812031 226 LLAEGMPEEIMKDERVQSA 244
Cdd:TIGR00958 691 VVEMGTHKQLMEDQGCYKH 709
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
5-234 |
9.85e-15 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 73.11 E-value: 9.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSfGehhvIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGI--- 81
Cdd:PRK10762 258 LKVDNLSGP-G----VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIvyi 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 -----GRSFQLtnifpELTVLENVRLSVQsfvqDYYSFFPSSAKFKQQVGEARRFLKT--VLLQEKEHVLAKdLAHGEKR 154
Cdd:PRK10762 333 sedrkRDGLVL-----GMSVKENMSLTAL----RYFSRAGGSLKHADEQQAVSDFIRLfnIKTPSMEQAIGL-LSGGNQQ 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 155 KLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPEStIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEE 234
Cdd:PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLS-IILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-221 |
1.02e-14 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 70.93 E-value: 1.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHH-------VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFK--GQEITKL 71
Cdd:COG4778 1 MTTLLEVENLSKTFTLHLqggkrlpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdGGWVDLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 72 SISDRTRLG-----IGRSFQLTNIFPELTVLENVrlsVQSFVQDYYSffPSSAKfkqqvGEARRFLKTVLLQEKehvlak 146
Cdd:COG4778 81 QASPREILAlrrrtIGYVSQFLRVIPRVSALDVV---AEPLLERGVD--REEAR-----ARARELLARLNLPER------ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 147 dLAH--------GEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENiKKHPESTIVLIEHKMDMVLGLSDHL 218
Cdd:COG4778 145 -LWDlppatfsgGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEE-AKARGTAIIGIFHDEEVREAVADRV 222
|
...
gi 984812031 219 IVL 221
Cdd:COG4778 223 VDV 225
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
4-176 |
1.22e-14 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 70.90 E-value: 1.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSiSDRTRLGIGR 83
Cdd:PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLK-PEIYRQQVSY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPElTVLENVRLSVQsfvqdyysffpssakFKQQVGEARRFLKTVLLQE-KEHVLAK---DLAHGEKRKLELA 159
Cdd:PRK10247 86 CAQTPTLFGD-TVYDNLIFPWQ---------------IRNQQPDPAIFLDDLERFAlPDTILTKniaELSGGEKQRISLI 149
|
170
....*....|....*..
gi 984812031 160 MLLALKTDVLLLDEPTA 176
Cdd:PRK10247 150 RNLQFMPKVLLLDEITS 166
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
19-230 |
1.32e-14 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 69.89 E-value: 1.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISP--TKGEVYFKGQEITKLSISDRtrlgIGRSFQLTNIFPELTV 96
Cdd:cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGlgVSGEVLINGRPLDKRSFRKI----IGYVPQDDILHPTLTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENVRLsvqsfvqdyysffpsSAKFKQqvgearrflktvllqekehvlakdLAHGEKRKLELAMLLALKTDVLLLDEPTA 176
Cdd:cd03213 100 RETLMF---------------AAKLRG------------------------LSGGERKRVSIALELVSNPSLLFLDEPTS 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 984812031 177 GISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:cd03213 141 GLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
9-235 |
2.05e-14 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 71.83 E-value: 2.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 9 NLSVSFGEHHVikDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGE------VYFKGQEITKLSISDRtrlGIG 82
Cdd:PRK11144 5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRivlngrVLFDAEKGICLPPEKR---RIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPELTVLENVRLSVQSFVQDYysffpssakfkqqvgearrFLKTVLLQEKEHVLAK---DLAHGEKRKLELA 159
Cdd:PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQ-------------------FDKIVALLGIEPLLDRypgSLSGGEKQRVAIG 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 160 MLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:PRK11144 141 RALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-235 |
2.23e-14 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 71.29 E-value: 2.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSF----GEHHVIKDVNLIVQKGKLISIIGPNGAGKT-TLFNLL-----SGQISptkGEVYFKGQEITK 70
Cdd:PRK09473 9 ADALLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAFALMgllaaNGRIG---GSATFNGREILN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 71 LSISDRTRLgigRSFQLTNIFPE-LTVLeNVRLSVQSFVQDYYSFFPSSAKfKQQVGEARRFLKTVLLQE---KEHVLAK 146
Cdd:PRK09473 86 LPEKELNKL---RAEQISMIFQDpMTSL-NPYMRVGEQLMEVLMLHKGMSK-AEAFEESVRMLDAVKMPEarkRMKMYPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 147 DLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT 240
|
....*....
gi 984812031 227 LAEGMPEEI 235
Cdd:PRK09473 241 MEYGNARDV 249
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
4-235 |
2.24e-14 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 72.05 E-value: 2.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSF-----------GEHHVIKDVNLIVQKGKLISIIGPNGAGKTT----LFNLLSGQisptkGEVYFKGQEI 68
Cdd:PRK15134 275 LLDVEQLQVAFpirkgilkrtvDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLINSQ-----GEIWFDGQPL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 69 TKLsiSDRTRLGIGRSFQLtnIFPELTVLENVRLSVQSFVQD---YYSFFPSSAKFKQQVGEArrfLKTVLLQ-EKEHVL 144
Cdd:PRK15134 350 HNL--NRRQLLPVRHRIQV--VFQDPNSSLNPRLNVLQIIEEglrVHQPTLSAAQREQQVIAV---MEEVGLDpETRHRY 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 145 AKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHG 224
Cdd:PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502
|
250
....*....|.
gi 984812031 225 ELLAEGMPEEI 235
Cdd:PRK15134 503 EVVEQGDCERV 513
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
16-237 |
2.26e-14 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 70.26 E-value: 2.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 16 EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIGRSFQLTNIFpELT 95
Cdd:cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ-IGLVSQEPVLF-DGT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 96 VLENVRL-------------SVQSFVQDYYSFFPSsaKFKQQVGEArrflktvllqekehvlAKDLAHGEKRKLELAMLL 162
Cdd:cd03249 93 IAENIRYgkpdatdeeveeaAKKANIHDFIMSLPD--GYDTLVGER----------------GSQLSGGQKQRIAIARAL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 163 ALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGlSDHLIVLFHGELLAEGMPEEIMK 237
Cdd:cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDELMA 226
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
27-245 |
4.84e-14 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 69.58 E-value: 4.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 27 VQKGKLISIIGPNGAGKTTLFNLLSGqISPTKGEVYFKGQEITKLSISDrtrLGIGRSF--QLTNIFPELTVLENVRLSV 104
Cdd:PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAE---LARHRAYlsQQQTPPFAMPVFQYLTLHQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 105 QSFVQdyysffpsSAKFKQQVGEARRFLKtvlLQEKEHVLAKDLAHGEKRKLELA-MLLALKTDV------LLLDEPTAG 177
Cdd:PRK03695 95 PDKTR--------TEAVASALNEVAEALG---LDDKLGRSVNQLSGGEWQRVRLAaVVLQVWPDInpagqlLLLDEPMNS 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 178 ISVEEVPAILQVienIKKHPES--TIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDERVQSAY 245
Cdd:PRK03695 164 LDVAQQAALDRL---LSELCQQgiAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVF 230
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-239 |
5.39e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 71.01 E-value: 5.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSF--GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDrTRLGI 81
Cdd:PRK11160 338 SLTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAA-LRQAI 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 GRSFQLTNIFPElTVLENVRLSVQSfvqdyysffPSSAKFK---QQVGearrfLKTvLLQEKEHVLA------KDLAHGE 152
Cdd:PRK11160 417 SVVSQRVHLFSA-TLRDNLLLAAPN---------ASDEALIevlQQVG-----LEK-LLEDDKGLNAwlgeggRQLSGGE 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpeSTIVLIEHKMdmvLGLS--DHLIVLFHGELLAEG 230
Cdd:PRK11160 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN--KTVLMITHRL---TGLEqfDRICVMDNGQIIEQG 555
|
....*....
gi 984812031 231 MPEEIMKDE 239
Cdd:PRK11160 556 THQELLAQQ 564
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
5-232 |
6.28e-14 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 68.59 E-value: 6.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEH--HVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD-RTRLGI 81
Cdd:cd03369 7 IEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDlRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 grsfqltnIFPELTVLE-NVRLSVQSFvqDYYSffpssakfKQQVGEArrflktvlLQEKEHVLakDLAHGEKRKLELAM 160
Cdd:cd03369 87 --------IPQDPTLFSgTIRSNLDPF--DEYS--------DEEIYGA--------LRVSEGGL--NLSQGQRQLLCLAR 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 984812031 161 LLALKTDVLLLDEPTAGISVEEVPAILQVIEniKKHPESTIVLIEHKMDMVLGLsDHLIVLFHGELLAEGMP 232
Cdd:cd03369 139 ALLKRPRVLVLDEATASIDYATDALIQKTIR--EEFTNSTILTIAHRLRTIIDY-DKILVMDAGEVKEYDHP 207
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
8-228 |
8.47e-14 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 70.53 E-value: 8.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 8 KNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGRSFQL 87
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 88 TNIFPELTVLENV---RLSVQSFVQDYYSFFPSSAKFKQQVGearrflktVLLQEKEHVlaKDLAHGEKRKLELAMLLAL 164
Cdd:PRK10982 82 LNLVLQRSVMDNMwlgRYPTKGMFVDQDKMYRDTKAIFDELD--------IDIDPRAKV--ATLSVSQMQMIEIAKAFSY 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLA 228
Cdd:PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIA 214
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
23-245 |
9.27e-14 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 68.71 E-value: 9.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 23 VNLIVQKGKLISIIGPNGAGKTTLFNLLSGqISPTKGEVYFKGQEITKLSISDRTRLgigRSF---QLTNIFPeLTVLEN 99
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAG-LLPGQGEILLNGRPLSDWSAAELARH---RAYlsqQQSPPFA-MPVFQY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 100 VRLSVQSfvqdyysfFPSSAKFKQQVGEARRFLKtvlLQEKehvLAKDLAH---GEKRKLELA-MLLALKTDV------L 169
Cdd:COG4138 90 LALHQPA--------GASSEAVEQLLAQLAEALG---LEDK---LSRPLTQlsgGEWQRVRLAaVLLQVWPTInpegqlL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 170 LLDEPTAGISVEEVPAILQVIENIkKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMKDERVQSAY 245
Cdd:COG4138 156 LLDEPMNSLDVAQQAALDRLLREL-CQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVF 230
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
23-229 |
2.09e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 69.17 E-value: 2.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 23 VNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGI-----GRSFQltNIFPELTVL 97
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGImlcpeDRKAE--GIIPVHSVA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 98 ENVRLSVQSFvqdyYSFFPSSAKFKQQVGEARRFLKtvLLQEK---EHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEP 174
Cdd:PRK11288 350 DNINISARRH----HLRAGCLINNRWEAENADRFIR--SLNIKtpsREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 175 TAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAE 229
Cdd:PRK11288 424 TRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
5-251 |
3.60e-13 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 66.87 E-value: 3.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHH--VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIG 82
Cdd:cd03251 1 VEFKNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQ-IG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPElTVLENVRLSV-------------QSFVQDYYSFFPSSakFKQQVGEarRFLKtvllqekehvlakdLA 149
Cdd:cd03251 80 LVSQDVFLFND-TVAENIAYGRpgatreeveeaarAANAHEFIMELPEG--YDTVIGE--RGVK--------------LS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 150 HGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpeSTIVLIEHKMDMVLGlSDHLIVLFHGELLAE 229
Cdd:cd03251 141 GGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKN--RTTFVIAHRLSTIEN-ADRIVVLEDGKIVER 217
|
250 260
....*....|....*....|..
gi 984812031 230 GMPEEIMKdervqsayLGGLYS 251
Cdd:cd03251 218 GTHEELLA--------QGGVYA 231
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-235 |
6.29e-13 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 67.79 E-value: 6.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFG----EHHVIKDVNLIVQKGKLISIIGPNGAGKT----TLFNLLSGQISPTKGEVYFKGQEItkLS 72
Cdd:COG4172 3 SMPLLSVEDLSVAFGqgggTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDL--LG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 73 ISDRTRLGIgRSFQLTNIFPE-LTVLeNVRLSVQsfvqdyysffpssakfkQQVGE------------ARR----FLKTV 135
Cdd:COG4172 81 LSERELRRI-RGNRIAMIFQEpMTSL-NPLHTIG-----------------KQIAEvlrlhrglsgaaARAraleLLERV 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 136 LLQEKEHVLaKDLAH----GEKRKLELAMLLALKTDVLLLDEPTAGISVeEVPA-ILQVIENIKKHPESTIVLIEHKMDM 210
Cdd:COG4172 142 GIPDPERRL-DAYPHqlsgGQRQRVMIAMALANEPDLLIADEPTTALDV-TVQAqILDLLKDLQRELGMALLLITHDLGV 219
|
250 260
....*....|....*....|....*
gi 984812031 211 VLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:COG4172 220 VRRFADRVAVMRQGEIVEQGPTAEL 244
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
19-237 |
1.00e-12 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 67.47 E-value: 1.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLsisDRTRLG--IG---RSFQL---T-- 88
Cdd:COG4618 347 ILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQW---DREELGrhIGylpQDVELfdgTia 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 89 -NI--FPELT---VLENVRLS-----VQSFVQDYysffpssakfKQQVGEARRFlktvllqekehvlakdLAHGEKRKLE 157
Cdd:COG4618 424 eNIarFGDADpekVVAAAKLAgvhemILRLPDGY----------DTRIGEGGAR----------------LSGGQRQRIG 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 158 LAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPeSTIVLIEHKMDmVLGLSDHLIVLFHGELLAEGMPEEIMK 237
Cdd:COG4618 478 LARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARG-ATVVVITHRPS-LLAAVDKLLVLRDGRVQAFGPRDEVLA 555
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
4-181 |
1.53e-12 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 64.87 E-value: 1.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKlsiSDRTRLgIGR 83
Cdd:PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRSRF-MAY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENVRlsvqsFVQDYYSFFPssakfKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLA 163
Cdd:PRK13543 87 LGHLPGLKADLSTLENLH-----FLCGLHGRRA-----KQMPGSA---LAIVGLAGYEDTLVRQLSAGQKKRLALARLWL 153
|
170
....*....|....*...
gi 984812031 164 LKTDVLLLDEPTAGISVE 181
Cdd:PRK13543 154 SPAPLWLLDEPYANLDLE 171
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
14-226 |
1.75e-12 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 64.90 E-value: 1.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 14 FGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRT--RLGIGRSFQLTNIF 91
Cdd:PRK10908 12 LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPflRRQIGMIFQDHHLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 92 PELTVLENVRLSVqsfvqdyYSFFPSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLL 171
Cdd:PRK10908 92 MDRTVYDNVAIPL-------IIAGASGDDIRRRVSAA---LDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 172 DEPTAGISVEEVPAILQVIENIKKhPESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:PRK10908 162 DEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
23-239 |
2.25e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 66.41 E-value: 2.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 23 VNLIVQKGKLISIIGPNGAGKTTLFNLLSGQIsPTKGEVYFKGQEITKLSISD-RTRLG-IGRSFQLtnifPELTVLENV 100
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESwRKHLSwVGQNPQL----PHGTLRDNV 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 101 RLSvqsfvqdyysffpssakfKQQVGEARrfLKTVLLQEKEHVLAKDLAH---------------GEKRKLELAMLLALK 165
Cdd:PRK11174 444 LLG------------------NPDASDEQ--LQQALENAWVSEFLPLLPQgldtpigdqaaglsvGQAQRLALARALLQP 503
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 984812031 166 TDVLLLDEPTAGISVEEVPAILQVIENIKKHpeSTIVLIEHKMDMVLGLsDHLIVLFHGELLAEGMPEEIMKDE 239
Cdd:PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAASRR--QTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAG 574
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
19-246 |
3.15e-12 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 64.43 E-value: 3.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEitkLSISDRT--RLGIGRSFQlTNIFPELTV 96
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHD---LALADPAwlRRQVGVVLQ-ENVLFNRSI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENVRLSVQSFVQDYYSFFPSSAKFKQQVGEARRFLKTVLLQEkehvlAKDLAHGEKRKLELAMLLALKTDVLLLDEPTA 176
Cdd:cd03252 93 RDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSGGQRQRIAIARALIHNPRILIFDEATS 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 177 GISVEEVPAILQVIENIKKHpeSTIVLIEHKMDMVLGlSDHLIVLFHGELLAEGMPEEIMkDERVQSAYL 246
Cdd:cd03252 168 ALDYESEHAIMRNMHDICAG--RTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELL-AENGLYAYL 233
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
5-248 |
4.10e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 65.34 E-value: 4.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVsfgeHHV-------IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGqISPTK--GEVYFKGQEITKLSISD 75
Cdd:PRK13549 260 LEVRNLTA----WDPvnphikrVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG-AYPGRweGEIFIDGKPVKIRNPQQ 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 76 RTRLGIG-----RSFQltNIFPELTVLENVRLSV-QSFVQdyYSFFPSSAKFKQqvgeARRFLKTVLLQEKEHVLA-KDL 148
Cdd:PRK13549 335 AIAQGIAmvpedRKRD--GIVPVMGVGKNITLAAlDRFTG--GSRIDDAAELKT----ILESIQRLKVKTASPELAiARL 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 149 AHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPEStIVLIEHKMDMVLGLSDHLIVLFHGELLA 228
Cdd:PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVA-IIVISSELPEVLGLSDRVLVMHEGKLKG 485
|
250 260
....*....|....*....|
gi 984812031 229 EgMPEEIMKDERVQSAYLGG 248
Cdd:PRK13549 486 D-LINHNLTQEQVMEAALRS 504
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
17-249 |
4.11e-12 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 64.52 E-value: 4.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 17 HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKlSISDRTRLGIGRSFQLTNIFPELtv 96
Cdd:PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-ALQKNLVAYVPQSEEVDWSFPVL-- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENV----RLSVQSFVQDyysffpSSAKFKQQVGEArrfLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLD 172
Cdd:PRK15056 97 VEDVvmmgRYGHMGWLRR------AKKRDRQIVTAA---LARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 173 EPTAGISVEEVPAILQVIENIKKHPEsTIVLIEHKMDMVLGLSDHlIVLFHGELLAEGMPEEIMKDERVQSAYLGGL 249
Cdd:PRK15056 168 EPFTGVDVKTEARIISLLRELRDEGK-TMLVSTHNLGSVTEFCDY-TVMVKGTVLASGPTETTFTAENLELAFSGVL 242
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
18-206 |
5.89e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 64.96 E-value: 5.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 18 HVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFkgQEITKlsisdrtrlgIGRSFQLTNIFPELTVL 97
Cdd:TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARP--QPGIK----------VGYLPQEPQLDPTKTVR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 98 ENVRLSVQSFVQDYYSFFPSSAKFKQQVGEARRFLKT-VLLQEK-EHVLAKDLAH-----------------------GE 152
Cdd:TIGR03719 87 ENVEEGVAEIKDALDRFNEISAKYAEPDADFDKLAAEqAELQEIiDAADAWDLDSqleiamdalrcppwdadvtklsgGE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 984812031 153 KRKLELAMLLALKTDVLLLDEPTAGISVEEVpAILqviENIKKHPESTIVLIEH 206
Cdd:TIGR03719 167 RRRVALCRLLLSKPDMLLLDEPTNHLDAESV-AWL---ERHLQEYPGTVVAVTH 216
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
4-223 |
9.79e-12 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 62.67 E-value: 9.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQIS--PTKGEVYFKGQEI-TKLSISDrtRLG 80
Cdd:COG2401 30 VLEAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKgtPVAGCVDVPDNQFgREASLID--AIG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IGRSFQLTnifpeLTVLENVRLSvqsfvqDYYSFFpssakfkqqvgeaRRFlktvllqekehvlaKDLAHGEKRKLELAM 160
Cdd:COG2401 108 RKGDFKDA-----VELLNAVGLS------DAVLWL-------------RRF--------------KELSTGQKFRFRLAL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 161 LLALKTDVLLLDEPTAGISVE---EVPAILQVIenIKKHpESTIVLIEHKMDMVLGLSDHLIVLFH 223
Cdd:COG2401 150 LLAERPKLLVIDEFCSHLDRQtakRVARNLQKL--ARRA-GITLVVATHHYDVIDDLQPDLLIFVG 212
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-245 |
1.10e-11 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 64.32 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSF-----------GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTL----FNLLsgqisPTKGEVYFKGQEI 68
Cdd:COG4172 275 LLEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLglalLRLI-----PSEGEIRFDGQDL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 69 TKLSISDRTRLgiGRSFQLtnIF--------PELTVLENVR--LSVQsFVQdyysffPSSAKFKQQVGEArrflktvlLQ 138
Cdd:COG4172 350 DGLSRRALRPL--RRRMQV--VFqdpfgslsPRMTVGQIIAegLRVH-GPG------LSAAERRARVAEA--------LE 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 139 EkehV-LAKDLAH--------GEKRKLELAMLLALKTDVLLLDEPTAGI--SVEevpaiLQVIE---NIKKHPESTIVLI 204
Cdd:COG4172 411 E---VgLDPAARHryphefsgGQRQRIAIARALILEPKLLVLDEPTSALdvSVQ-----AQILDllrDLQREHGLAYLFI 482
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 984812031 205 EHKMDMVLGLSDHLIVLFHGELLAEGMPEEIMkdERVQSAY 245
Cdd:COG4172 483 SHDLAVVRALAHRVMVMKDGKVVEQGPTEQVF--DAPQHPY 521
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
6-177 |
2.11e-11 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 63.61 E-value: 2.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 6 ETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLG-IGRS 84
Cdd:NF033858 268 EARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDIATRRRVGyMSQA 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 85 FQLtniFPELTVLENV----RLsvqsfvqdyysFFPSSAKFKQQVGE-ARRFlktvLLQEKEHVLAKDLAHGEKRKLELA 159
Cdd:NF033858 348 FSL---YGELTVRQNLelhaRL-----------FHLPAAEIAARVAEmLERF----DLADVADALPDSLPLGIRQRLSLA 409
|
170
....*....|....*...
gi 984812031 160 MLLALKTDVLLLDEPTAG 177
Cdd:NF033858 410 VAVIHKPELLILDEPTSG 427
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
16-226 |
2.46e-11 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 61.72 E-value: 2.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 16 EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEIT---------KLSISDRTRLGIGRSFQ 86
Cdd:cd03248 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISqyehkylhsKVSLVGQEPVLFARSLQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 87 lTNI---FPELTVLENVRLSVQSFVQDYYSFFPSSakFKQQVGEArrflktvllqekehvlAKDLAHGEKRKLELAMLLA 163
Cdd:cd03248 106 -DNIaygLQSCSFECVKEAAQKAHAHSFISELASG--YDTEVGEK----------------GSQLSGGQKQRVAIARALI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984812031 164 LKTDVLLLDEPTAGISVEEVPAILQVIENikKHPESTIVLIEHKMDMVlGLSDHLIVLFHGEL 226
Cdd:cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYD--WPERRTVLVIAHRLSTV-ERADQILVLDGGRI 226
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
27-224 |
2.87e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 63.49 E-value: 2.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 27 VQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKlSISDrTRLGIGRSFQLTNIFPELTVLENVRLsvqs 106
Cdd:TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISD-VHQNMGYCPQFDAIDDLLTGREHLYL---- 2035
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 107 fvqdYYSFFPSSAKFKQQVgeARRFLKTVLLQEKEHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAI 186
Cdd:TIGR01257 2036 ----YARLRGVPAEEIEKV--ANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML 2109
|
170 180 190
....*....|....*....|....*....|....*...
gi 984812031 187 LQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHG 224
Cdd:TIGR01257 2110 WNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
4-244 |
4.02e-11 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 62.53 E-value: 4.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVsfgeHHVIK-------DVNLIVQKGKLISIIGPNGAGKTTLFNLLSGqISPTK--GEVYFKGQEITKLSIS 74
Cdd:TIGR02633 257 ILEARNLTC----WDVINphrkrvdDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKfeGNVFINGKPVDIRNPA 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 75 DRTRLGIG---RSFQLTNIFPELTVLENVRLSV-QSFVqdyysffpssakFKQQVGEA------RRFLKTVLLQEKEHVL 144
Cdd:TIGR02633 332 QAIRAGIAmvpEDRKRHGIVPILGVGKNITLSVlKSFC------------FKMRIDAAaelqiiGSAIQRLKVKTASPFL 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 145 A-KDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVlIEHKMDMVLGLSDHLIVLFH 223
Cdd:TIGR02633 400 PiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIV-VSSELAEVLGLSDRVLVIGE 478
|
250 260
....*....|....*....|.
gi 984812031 224 GELLAEGMPEEIMKDERVQSA 244
Cdd:TIGR02633 479 GKLKGDFVNHALTQEQVLAAA 499
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
5-237 |
5.18e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 62.66 E-value: 5.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGE--HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDrtrlgig 82
Cdd:TIGR00957 1285 VEFRNYCLRYREdlDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHD------- 1357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTnIFPELTVL--ENVRLSVQSFVQ----------------DYYSFFPssAKFKQQVGEArrflktvllqekehvl 144
Cdd:TIGR00957 1358 LRFKIT-IIPQDPVLfsGSLRMNLDPFSQysdeevwwalelahlkTFVSALP--DKLDHECAEG---------------- 1418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 145 AKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENikKHPESTIVLIEHKMDMVLGLSdHLIVLFHG 224
Cdd:TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT--QFEDCTVLTIAHRLNTIMDYT-RVIVLDKG 1495
|
250
....*....|...
gi 984812031 225 ELLAEGMPEEIMK 237
Cdd:TIGR00957 1496 EVAEFGAPSNLLQ 1508
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
15-234 |
7.45e-11 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 61.60 E-value: 7.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 15 GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISP---TKGEVYFKGQEITKLSIsdRTRLGIGRSFQLtnIF 91
Cdd:TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMPIDAKEM--RAISAYVQQDDL--FI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 92 PELTVLENVRLSVQSFVQDYYsffPSSAKFK--QQVGEARRFLK---TVLLQEKEHvlaKDLAHGEKRKLELAmlLALKT 166
Cdd:TIGR00955 112 PTLTVREHLMFQAHLRMPRRV---TKKEKRErvDEVLQALGLRKcanTRIGVPGRV---KGLSGGERKRLAFA--SELLT 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 167 D--VLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEE 234
Cdd:TIGR00955 184 DppLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-224 |
7.82e-11 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 61.64 E-value: 7.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTH-LLETKNLSVSF----GEHHVIKDVNLIVQKGKLISIIGPNGAGKT-TLFNLLSGQISP----TKGEVYFKGQEItk 70
Cdd:PRK15134 1 MTQpLLAIENLSVAFrqqqTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPpvvyPSGDIRFHGESL-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 71 LSISDRTRLGIgRSFQLTNIFPELTVLENVRLSVQSFVQDYYSFFPSSAKfKQQVGEARRFLKTVLLQEKEHVLAkDLAH 150
Cdd:PRK15134 79 LHASEQTLRGV-RGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRR-EAARGEILNCLDRVGIRQAAKRLT-DYPH 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 151 ----GEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHG 224
Cdd:PRK15134 156 qlsgGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
20-237 |
1.64e-10 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 60.57 E-value: 1.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 20 IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIG---RSFQLTNIFPELTV 96
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAyitESRRDNGFFPNFSI 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENVRLSVQSFVQDY---YSFFpsSAKFKQQVGEARRflktVLLQEKEHVLAK---DLAHGEKRKLELAMLLALKTDVLL 170
Cdd:PRK09700 359 AQNMAISRSLKDGGYkgaMGLF--HEVDEQRTAENQR----ELLALKCHSVNQnitELSGGNQQKVLISKWLCCCPEVII 432
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984812031 171 LDEPTAGISVEEVPAILQVIENIKKHPEsTIVLIEHKMDMVLGLSDHLIVLFHGEL------LAEGMPEEIMK 237
Cdd:PRK09700 433 FDEPTRGIDVGAKAEIYKVMRQLADDGK-VILMVSSELPEIITVCDRIAVFCEGRLtqiltnRDDMSEEEIMA 504
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
20-221 |
1.69e-10 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 58.79 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 20 IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQ--ISPTKGEVYFKGQEITKlsisDRTRlGIGRSFQLTNIFPELTVL 97
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRktAGVITGEILINGRPLDK----NFQR-STGYVEQQDVHSPNLTVR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 98 ENVRLSvqsfvqdyysffpssakfkqqvgearrflktvllqekehVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAG 177
Cdd:cd03232 98 EALRFS---------------------------------------ALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSG 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 984812031 178 ISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVL 221
Cdd:cd03232 139 LDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLL 182
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
19-239 |
1.75e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 61.15 E-value: 1.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRlgigrsfqLTNIFPELTVL- 97
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR--------VLSIIPQSPVLf 1322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 98 -ENVRLSVQSFVQ----DYYSFFpSSAKFKQQVGEARRFLKTVLLQEKEhvlakDLAHGEKRKLELAMLLALKTDVLLLD 172
Cdd:PLN03232 1323 sGTVRFNIDPFSEhndaDLWEAL-ERAHIKDVIDRNPFGLDAEVSEGGE-----NFSVGQRQLLSLARALLRRSKILVLD 1396
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 173 EPTAGISVeEVPAILQviENIKKHPES-TIVLIEHKMDMVLGlSDHLIVLFHGELLAEGMPEEIMKDE 239
Cdd:PLN03232 1397 EATASVDV-RTDSLIQ--RTIREEFKScTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
5-65 |
2.05e-10 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 58.63 E-value: 2.05e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 5 LETKNLSVSFGEHH-----VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKG 65
Cdd:cd03250 1 ISVEDASFTWDSGEqetsfTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG 66
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
4-240 |
2.07e-10 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 59.76 E-value: 2.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHV-IKDVNLI---VQKGKLISIIGPNGAGKT----TLFNLLS--GQISPTKGEvyFKGQEITKLSI 73
Cdd:PRK11022 3 LLNVDKLSVHFGDESApFRAVDRIsysVKQGEVVGIVGESGSGKSvsslAIMGLIDypGRVMAEKLE--FNGQDLQRISE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 74 SDRTRL---GIGRSFQ--LTNIFPELTV----LENVRLSvQSfvqdyysffpSSAKFKQQvgEARRFLKTVLLQEKE--- 141
Cdd:PRK11022 81 KERRNLvgaEVAMIFQdpMTSLNPCYTVgfqiMEAIKVH-QG----------GNKKTRRQ--RAIDLLNQVGIPDPAsrl 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 142 HVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVL 221
Cdd:PRK11022 148 DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVM 227
|
250
....*....|....*....
gi 984812031 222 FHGELLAEGMPEEIMKDER 240
Cdd:PRK11022 228 YAGQVVETGKAHDIFRAPR 246
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-79 |
2.52e-10 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 59.17 E-value: 2.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQ-----EITKLSISD 75
Cdd:PRK11701 3 DQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRdgqlrDLYALSEAE 82
|
....
gi 984812031 76 RTRL 79
Cdd:PRK11701 83 RRRL 86
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
26-225 |
3.22e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 59.80 E-value: 3.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 26 IVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVyfkGQEITKLSISDRtrlgigrsFQLTNIFPELTVLENVRLSVQ 105
Cdd:COG1245 95 VPKKGKVTGILGPNGIGKSTALKILSGELKPNLGDY---DEEPSWDEVLKR--------FRGTELQDYFKKLANGEIKVA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 106 SFVQdYYSFFPSSAKfkqqvGEARRFLKTV-------LLQEK---EHVLAKDLAH---GEKRKLELAMLLALKTDVLLLD 172
Cdd:COG1245 164 HKPQ-YVDLIPKVFK-----GTVRELLEKVdergkldELAEKlglENILDRDISElsgGELQRVAIAAALLRDADFYFFD 237
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 173 EPTAGISVEEVPAILQVIENIKKhPESTIVLIEHKM---DMvlgLSDHlIVLFHGE 225
Cdd:COG1245 238 EPSSYLDIYQRLNVARLIRELAE-EGKYVLVVEHDLailDY---LADY-VHILYGE 288
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
5-173 |
3.62e-10 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 59.60 E-value: 3.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHV-IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIGR 83
Cdd:PRK10522 323 LELRNVTFAYQDNGFsVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL-FSA 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLENvrlsvqsfvqdyysfFPSSAKFKQQvgearrFLKTVLLQEK-----EHVLAKDLAHGEKRKLEL 158
Cdd:PRK10522 402 VFTDFHLFDQLLGPEG---------------KPANPALVEK------WLERLKMAHKleledGRISNLKLSKGQKKRLAL 460
|
170
....*....|....*
gi 984812031 159 AMLLALKTDVLLLDE 173
Cdd:PRK10522 461 LLALAEERDILLLDE 475
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
3-242 |
4.57e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 59.26 E-value: 4.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 3 HLLETKNLSVSfgehhvikdvNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLgIG 82
Cdd:PRK10938 12 RLSDTKTLQLP----------SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKL-VS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNifpelTVL-----ENVRLSVQSFVQDYYSFFPSSAKFKQQVGEA----RRFlktvllqekehvlaKDLAHGEK 153
Cdd:PRK10938 81 DEWQRNN-----TDMlspgeDDTGRTTAEIIQDEVKDPARCEQLAQQFGITalldRRF--------------KYLSTGET 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 154 RKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPE 233
Cdd:PRK10938 142 RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220
|
....*....
gi 984812031 234 EIMKDERVQ 242
Cdd:PRK10938 221 EILQQALVA 229
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
4-226 |
5.76e-10 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 59.03 E-value: 5.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVyfkgqeitklSISDRTRLGIGR 83
Cdd:PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI----------GLAKGIKLGYFA 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTNIFPELTVLEN-VRLSVQSFVQ---DYYSFFpssaKFK-QQVGEA-RRFlktvllqekehvlakdlAHGEKRKLE 157
Cdd:PRK10636 382 QHQLEFLRADESPLQHlARLAPQELEQklrDYLGGF----GFQgDKVTEEtRRF-----------------SGGEKARLV 440
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984812031 158 LAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIkkhpESTIVLIEHKMDMVLGLSDHLIVLFHGEL 226
Cdd:PRK10636 441 LALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
4-230 |
8.85e-10 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 58.43 E-value: 8.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSF-GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDrTRLGIG 82
Cdd:PRK13657 334 AVEFDDVSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAS-LRRNIA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPElTVLENVRL-----------------SVQSFVQDyysffpSSAKFKQQVGEARRflktvllqekehvla 145
Cdd:PRK13657 413 VVFQDAGLFNR-SIEDNIRVgrpdatdeemraaaeraQAHDFIER------KPDGYDTVVGERGR--------------- 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 146 kDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpeSTIVLIEHKMDMVLGlSDHLIVLFHGE 225
Cdd:PRK13657 471 -QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKG--RTTFIIAHRLSTVRN-ADRILVFDNGR 546
|
....*
gi 984812031 226 LLAEG 230
Cdd:PRK13657 547 VVESG 551
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
4-245 |
1.62e-09 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 56.76 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPT--------KGEVYFKGQEITKLsisD 75
Cdd:PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEPLAAI---D 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 76 RTRLGIGRSF---QLTNIFPeLTVLENVRLSVqsfvqdyysfFPSSAKFKQQVGEARRFLKTVL-LQEKEHVLAKD---L 148
Cdd:PRK13547 78 APRLARLRAVlpqAAQPAFA-FSAREIVLLGR----------YPHARRAGALTHRDGEIAWQALaLAGATALVGRDvttL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 149 AHGEKRKLELAMLLA---------LKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLI 219
Cdd:PRK13547 147 SGGELARVQFARVLAqlwpphdaaQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA 226
|
250 260
....*....|....*....|....*.
gi 984812031 220 VLFHGELLAEGMPEEIMKDERVQSAY 245
Cdd:PRK13547 227 MLADGAIVAHGAPADVLTPAHIARCY 252
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
26-222 |
2.18e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 56.22 E-value: 2.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 26 IVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEV-----------YFKGQEitklsisdrtrlgigrsfqLTNIFpel 94
Cdd:cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFddppdwdeildEFRGSE-------------------LQNYF--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 95 TVLENVRLSVQSFVQdYYSFFPSSakFKQQVGE------ARRFLKTVLLQ-EKEHVLAK---DLAHGEKRKLELAMLLAL 164
Cdd:cd03236 80 TKLLEGDVKVIVKPQ-YVDLIPKA--VKGKVGEllkkkdERGKLDELVDQlELRHVLDRnidQLSGGELQRVAIAAALAR 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVlIEHKMDMVLGLSDHLIVLF 222
Cdd:cd03236 157 DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV-VEHDLAVLDYLSDYIHCLY 213
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
4-236 |
2.31e-09 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 56.73 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSF----GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSG----QISPTKGEVYFKGQEITKLSISD 75
Cdd:PRK15093 3 LLDIRNLTIEFktsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvtkdNWRVTADRMRFDDIDLLRLSPRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 76 RTRLgIGRSFQLtnIFPE----LTVLENV-RLSVQSFVQDYYSffpssAKFKQQVGEARR----FLKTVLLQEKEHVLAK 146
Cdd:PRK15093 83 RRKL-VGHNVSM--IFQEpqscLDPSERVgRQLMQNIPGWTYK-----GRWWQRFGWRKRraieLLHRVGIKDHKDAMRS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 147 ---DLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFH 223
Cdd:PRK15093 155 fpyELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234
|
250
....*....|...
gi 984812031 224 GELLAEGMPEEIM 236
Cdd:PRK15093 235 GQTVETAPSKELV 247
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
4-181 |
2.92e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 55.26 E-value: 2.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFgEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGR 83
Cdd:PRK13541 1 MLSLHQLQFNI-EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLtnifpELTVLENVRLsvqsfvqdYYSFFPSSAKFKQQVgeaRRFLKTVLLQEKEHvlakDLAHGEKRKLELAMLLA 163
Cdd:PRK13541 80 GLKL-----EMTVFENLKF--------WSEIYNSAETLYAAI---HYFKLHDLLDEKCY----SLSSGMQKIVAIARLIA 139
|
170
....*....|....*...
gi 984812031 164 LKTDVLLLDEPTAGISVE 181
Cdd:PRK13541 140 CQSDLWLLDEVETNLSKE 157
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
26-225 |
3.36e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 56.74 E-value: 3.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 26 IVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEV-----------YFKGQEitklsisdrtrlgigrsfqLTNIFPEL 94
Cdd:PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYeeepswdevlkRFRGTE-------------------LQNYFKKL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 95 tVLENVRLSVQsfVQdYYSFFPSSAKFK-----QQVGEARRFLKTVLLQEKEHVLAKD---LAHGEKRKLELAMLLALKT 166
Cdd:PRK13409 156 -YNGEIKVVHK--PQ-YVDLIPKVFKGKvrellKKVDERGKLDEVVERLGLENILDRDiseLSGGELQRVAIAAALLRDA 231
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 167 DVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMdMVLG-LSDhLIVLFHGE 225
Cdd:PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDL-AVLDyLAD-NVHIAYGE 287
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
3-229 |
3.38e-09 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 55.85 E-value: 3.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 3 HLLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtrlgig 82
Cdd:PRK10419 11 HHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR------ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFqltnifpeltvlenvRLSVQSFVQDYYSFFPSSAKFKQQVGEARRFLKTVLLQEKEHVLAK-------DLAHGEKR- 154
Cdd:PRK10419 85 KAF---------------RRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEmlravdlDDSVLDKRp 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 155 ---------KLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGE 225
Cdd:PRK10419 150 pqlsggqlqRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQ 229
|
....
gi 984812031 226 LLAE 229
Cdd:PRK10419 230 IVET 233
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
4-238 |
3.50e-09 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 56.25 E-value: 3.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGehhvIKD-----------------VNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQ 66
Cdd:PRK15079 8 LLEVADLKVHFD----IKDgkqwfwqppktlkavdgVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 67 EITKLSISDR--TRLGIGRSFQ--LTNIFPELTVLENVRLSVQsfvqdyySFFP--SSAKFKQQVGEArrFLKTVLLQEK 140
Cdd:PRK15079 84 DLLGMKDDEWraVRSDIQMIFQdpLASLNPRMTIGEIIAEPLR-------TYHPklSRQEVKDRVKAM--MLKVGLLPNL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 141 EHVLAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIV 220
Cdd:PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234
|
250
....*....|....*...
gi 984812031 221 LFHGELLAEGMPEEIMKD 238
Cdd:PRK15079 235 MYLGHAVELGTYDEVYHN 252
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
13-236 |
3.63e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 56.81 E-value: 3.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 13 SFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQI--SPTKGEVYFKGQEITKlSISDRTrlgiGRSFQLTNI 90
Cdd:PLN03211 77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIqgNNFTGTILANNRKPTK-QILKRT----GFVTQDDIL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 91 FPELTVLENvrLSVQSFVQdyysfFPSSAKFKQQVGEARRFLKTVLLQEKEHVLA-----KDLAHGEKRKLELAMLLALK 165
Cdd:PLN03211 152 YPHLTVRET--LVFCSLLR-----LPKSLTKQEKILVAESVISELGLTKCENTIIgnsfiRGISGGERKRVSIAHEMLIN 224
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 984812031 166 TDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEIM 236
Cdd:PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
16-230 |
6.15e-09 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 55.87 E-value: 6.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 16 EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD-RTRLGIGRsfQLTNIFPEl 94
Cdd:PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSwRSRLAVVS--QTPFLFSD- 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 95 TVLENVRLSVQSFVQdyysffpssakfkQQVGEARRfLKTV------LLQEKEHVLAKD---LAHGEKRKLELAMLLALK 165
Cdd:PRK10789 404 TVANNIALGRPDATQ-------------QEIEHVAR-LASVhddilrLPQGYDTEVGERgvmLSGGQKQRISIARALLLN 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 166 TDVLLLDEPTAGISVEEVPAILQvieNIKKHPESTIVLIE-HKMDmVLGLSDHLIVLFHGELLAEG 230
Cdd:PRK10789 470 AEILILDDALSAVDGRTEHQILH---NLRQWGEGRTVIISaHRLS-ALTEASEILVMQHGHIAQRG 531
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
15-99 |
6.78e-09 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 55.62 E-value: 6.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 15 GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRtrlGIGRSFQLTNIFPEL 94
Cdd:PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADR---DIAMVFQNYALYPHM 91
|
....*
gi 984812031 95 TVLEN 99
Cdd:PRK11650 92 SVREN 96
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
33-243 |
1.45e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 55.13 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 33 ISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISD-RTRLGigrsfqltnIFPELTVL--ENVRLSVQSFVQ 109
Cdd:PLN03130 1268 VGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDlRKVLG---------IIPQAPVLfsGTVRFNLDPFNE 1338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 110 DyysffpSSAKFKQQVgeARRFLKTVLLQEKEHVLAK------DLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVeEV 183
Cdd:PLN03130 1339 H------NDADLWESL--ERAHLKDVIRRNSLGLDAEvseageNFSVGQRQLLSLARALLRRSKILVLDEATAAVDV-RT 1409
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 184 PAILQviENIKKHPES-TIVLIEHKMDMVLGlSDHLIVLFHGELLAEGMPEEIMKDER------VQS 243
Cdd:PLN03130 1410 DALIQ--KTIREEFKScTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEGsafskmVQS 1473
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
27-225 |
1.51e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 52.96 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 27 VQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEvyfkgqeitklsisdrtrlgigrsfqltnifpelTVLENVRLSVQS 106
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN----------------------------------DEWDGITPVYKP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 107 fvqdyysffpssakfkQQVgearrflktvllqekehvlakDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAI 186
Cdd:cd03222 68 ----------------QYI---------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNA 110
|
170 180 190
....*....|....*....|....*....|....*....
gi 984812031 187 LQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVlFHGE 225
Cdd:cd03222 111 ARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHV-FEGE 148
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
5-220 |
2.34e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 54.53 E-value: 2.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGE--HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSgQISPTKGEVYFKGqeITKLSISDRT-RLGI 81
Cdd:TIGR01271 1218 MDVQGLTAKYTEagRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDG--VSWNSVTLQTwRKAF 1294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 GRSFQLTNIFPElTVLENVRLSVQSFVQDYYsffpssaKFKQQVGearrfLKTVLLQ--EKEHVLAKD----LAHGEKRK 155
Cdd:TIGR01271 1295 GVIPQKVFIFSG-TFRKNLDPYEQWSDEEIW-------KVAEEVG-----LKSVIEQfpDKLDFVLVDggyvLSNGHKQL 1361
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISveevPAILQVIENIKKHPES--TIVLIEHKMDMVLGLSDHLIV 220
Cdd:TIGR01271 1362 MCLARSILSKAKILLLDEPSAHLD----PVTLQIIRKTLKQSFSncTVILSEHRVEALLECQQFLVI 1424
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
4-237 |
3.60e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 53.64 E-value: 3.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSV---SFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQ-----ISptkGEVYFKGQEITKLSIS- 74
Cdd:NF040905 257 VFEVKNWTVyhpLHPERKVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGRsygrnIS---GTVFKDGKEVDVSTVSd 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 75 -----------DRTRLG------IGRSFQLTNIFpeltvlenvRLSVQSFVQDYysffpssakfkQQVGEARRFLKTvlL 137
Cdd:NF040905 334 aidaglayvteDRKGYGlnliddIKRNITLANLG---------KVSRRGVIDEN-----------EEIKVAEEYRKK--M 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 138 QEKEH-VLAK--DLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVE---EVPAILQVIENIKKhpesTIVLIEHKMDMV 211
Cdd:NF040905 392 NIKTPsVFQKvgNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGakyEIYTIINELAAEGK----GVIVISSELPEL 467
|
250 260 270
....*....|....*....|....*....|.
gi 984812031 212 LGLSDHLIVLFHGELL-----AEGMPEEIMK 237
Cdd:NF040905 468 LGMCDRIYVMNEGRITgelprEEASQERIMR 498
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1-240 |
4.14e-08 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 53.04 E-value: 4.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNL----SVS---FGEHHVIKDVNLI---VQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITK 70
Cdd:PRK11308 2 QQPLLQAIDLkkhyPVKrglFKPERLVKALDGVsftLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 71 LSISDRTRLgigrsfqltnifpeltvlenvRLSVQSFVQDYYSFFPSSAKFKQQVGE----------------ARRFLKT 134
Cdd:PRK11308 82 ADPEAQKLL---------------------RQKIQIVFQNPYGSLNPRKKVGQILEEpllintslsaaerrekALAMMAK 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 135 VLLQeKEHvlAKDLAH----GEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDM 210
Cdd:PRK11308 141 VGLR-PEH--YDRYPHmfsgGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSV 217
|
250 260 270
....*....|....*....|....*....|
gi 984812031 211 VLGLSDHLIVLFHGELLAEGMPEEIMKDER 240
Cdd:PRK11308 218 VEHIADEVMVMYLGRCVEKGTKEQIFNNPR 247
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
9-246 |
4.26e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 53.59 E-value: 4.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 9 NLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITklSISDRTRL--------- 79
Cdd:NF033858 6 GVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMA--DARHRRAVcpriaympq 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 GIGRsfqltNIFPELTVLENVRlsvqsfvqdyysFFpssAK-FKQQVGEARR----FLKTVLLQEKEHVLAKDLAHGEKR 154
Cdd:NF033858 84 GLGK-----NLYPTLSVFENLD------------FF---GRlFGQDAAERRRrideLLRATGLAPFADRPAGKLSGGMKQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 155 KLELAMLLALKTDVLLLDEPTAGISveevPaiL------QVIENIKK-HPESTIVLIEHKMDMVLGLsDHLIVLFHGELL 227
Cdd:NF033858 144 KLGLCCALIHDPDLLILDEPTTGVD----P--LsrrqfwELIDRIRAeRPGMSVLVATAYMEEAERF-DWLVAMDAGRVL 216
|
250
....*....|....*....
gi 984812031 228 AEGMPEEIMkdERVQSAYL 246
Cdd:NF033858 217 ATGTPAELL--ARTGADTL 233
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
5-220 |
5.74e-08 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 52.55 E-value: 5.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGE--HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISpTKGEVYFKGQEITKLSISdRTRLGIG 82
Cdd:cd03289 3 MTVKDLTAKYTEggNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQ-KWRKAFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPElTVLENVRLSVQSFVQDYYsffpssaKFKQQVGearrfLKTVLLQ---EKEHVLAKD---LAHGEKRKL 156
Cdd:cd03289 81 VIPQKVFIFSG-TFRKNLDPYGKWSDEEIW-------KVAEEVG-----LKSVIEQfpgQLDFVLVDGgcvLSHGHKQLM 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 157 ELAMLLALKTDVLLLDEPTAGISveevPAILQVIENIKKH--PESTIVLIEHKMDMVLGLSDHLIV 220
Cdd:cd03289 148 CLARSVLSKAKILLLDEPSAHLD----PITYQVIRKTLKQafADCTVILSEHRIEAMLECQRFLVI 209
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
10-236 |
6.64e-08 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 53.29 E-value: 6.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 10 LSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFN---------LLSGQISPTkgeVYFKGQEITKLSISDRTRLG 80
Cdd:PRK00635 601 LTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLINdtlvpaveeFIEQGFCSN---LSIQWGAISRLVHITRDLPG 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 81 IG-RSFQLTNI--FPELTVL--ENVRLSVQSFVQDYYSF-FPSSA---------------------------KFKQQVGE 127
Cdd:PRK00635 678 RSqRSIPLTYIkaFDDLRELfaEQPRSKRLGLTKSHFSFnTPLGAcaecqglgsitttdnrtsipcpsclgkRFLPQVLE 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 128 ARR-------------------FLKTVLLQEKEHVLAK-------------DLAHGEKRKLELA--MLLALKTDVL-LLD 172
Cdd:PRK00635 758 VRYkgkniadilemtayeaekfFLDEPSIHEKIHALCSlgldylplgrplsSLSGGEIQRLKLAyeLLAPSKKPTLyVLD 837
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 173 EPTAGISVEEVPAILQVIENIkKHPESTIVLIEHKMDMVlGLSDHLIVL------FHGELLAEGMPEEIM 236
Cdd:PRK00635 838 EPTTGLHTHDIKALIYVLQSL-THQGHTVVIIEHNMHVV-KVADYVLELgpeggnLGGYLLASCSPEELI 905
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
148-235 |
6.72e-08 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 53.09 E-value: 6.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 148 LAHGEKRKLELAMLLALKTD---VLLLDEPTAGISVEEVPAILQVIENIkKHPESTIVLIEHKMDmVLGLSDHLIVL--- 221
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSKRSTgrtLYILDEPTTGLHFDDIKKLLEVLQRL-VDKGNTVVVIEHNLD-VIKTADYIIDLgpe 907
|
90
....*....|....*..
gi 984812031 222 ---FHGELLAEGMPEEI 235
Cdd:TIGR00630 908 ggdGGGTVVASGTPEEV 924
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
5-206 |
9.10e-08 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 50.62 E-value: 9.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHV-IKDVNLIVQKGKLISIIGPNGAGKTTLFNLL-------SGQIS-PTKGEVYFkgqeitklsISD 75
Cdd:cd03223 1 IELENLSLATPDGRVlLKDLSFEIKPGDRLLITGPSGTGKSSLFRALaglwpwgSGRIGmPEGEDLLF---------LPQ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 76 RTRLGIGRsfqltnifpeltvlenvrlsvqsfvqdyysffpssakfkqqvgearrfLKTVLLQEKEHVlakdLAHGEKRK 155
Cdd:cd03223 72 RPYLPLGT------------------------------------------------LREQLIYPWDDV----LSGGEQQR 99
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 984812031 156 LELAMLLALKTDVLLLDEPTAGISVEEVPAILQVienIKKHpESTIVLIEH 206
Cdd:cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQL---LKEL-GITVISVGH 146
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
18-175 |
1.01e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 52.43 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 18 HVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFkgqeitklsiSDRTRLGI-GRSFQLTnifPELTV 96
Cdd:PRK11819 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP----------APGIKVGYlPQEPQLD---PEKTV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 97 LENVRLSVQSFVQDYYSFFPSSAKFKQQVGE----ARRFLKtvlLQEK-EHVLAKDLAH--------------------- 150
Cdd:PRK11819 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADfdalAAEQGE---LQEIiDAADAWDLDSqleiamdalrcppwdakvtkl 164
|
170 180
....*....|....*....|....*..
gi 984812031 151 --GEKRKLELAMLLALKTDVLLLDEPT 175
Cdd:PRK11819 165 sgGERRRVALCRLLLEKPDMLLLDEPT 191
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
23-173 |
1.38e-07 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 51.72 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 23 VNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSIsDRTRlgigrsfQL-TNIFpeltvlenvr 101
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADNR-EAYR-------QLfSAVF---------- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 102 lsvqsfvQDYYSF-----FPSSAkfkqQVGEARRFLKTVLLQEKEHV-----LAKDLAHGE-KRkleLAMLLAL--KTDV 168
Cdd:COG4615 413 -------SDFHLFdrllgLDGEA----DPARARELLERLELDHKVSVedgrfSTTDLSQGQrKR---LALLVALleDRPI 478
|
....*
gi 984812031 169 LLLDE 173
Cdd:COG4615 479 LVFDE 483
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
4-246 |
2.48e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 50.88 E-value: 2.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSfgEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDrtrlGIGR 83
Cdd:PRK10982 250 ILEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE----AINH 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQL-------TNIFPELTVLENvrlSVQSFVQDYYSFFP--SSAKFK---QQVGEARRfLKTvllqEKEHVLAKDLAHG 151
Cdd:PRK10982 324 GFALvteerrsTGIYAYLDIGFN---SLISNIRNYKNKVGllDNSRMKsdtQWVIDSMR-VKT----PGHRTQIGSLSGG 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 152 EKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGEL----- 226
Cdd:PRK10982 396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVagivd 474
|
250 260
....*....|....*....|
gi 984812031 227 LAEGMPEEIMkdeRVQSAYL 246
Cdd:PRK10982 475 TKTTTQNEIL---RLASLHL 491
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
15-224 |
3.33e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 50.88 E-value: 3.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 15 GEHHVI-KDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISP---TKGEVYFKGQEITKlSISDRtrlgIGRSFQLTNI 90
Cdd:TIGR00956 773 KEKRVIlNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTgviTGGDRLVNGRPLDS-SFQRS----IGYVQQQDLH 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 91 FPELTVLENVRLSVqsfvqdyYSFFPSSAKFKqqvgEARRFLKTVL-LQEKEHVlaKDLAHG--------EKRK-LELAM 160
Cdd:TIGR00956 848 LPTSTVRESLRFSA-------YLRQPKSVSKS----EKMEYVEEVIkLLEMESY--ADAVVGvpgeglnvEQRKrLTIGV 914
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 161 LLALKTDVLL-LDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHG 224
Cdd:TIGR00956 915 ELVAKPKLLLfLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
126-240 |
4.84e-07 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 50.41 E-value: 4.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 126 GEARRfLKtvllqekehvLAKDLAhgeKRKLElamllalKTdVLLLDEPTAGISVEEVPAILQVIENI--KKHpesTIVL 203
Cdd:COG0178 830 GEAQR-VK----------LASELS---KRSTG-------KT-LYILDEPTTGLHFHDIRKLLEVLHRLvdKGN---TVVV 884
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 984812031 204 IEHKMDmVLGLSDHLIVL------FHGELLAEGMPEEIMKDER 240
Cdd:COG0178 885 IEHNLD-VIKTADWIIDLgpeggdGGGEIVAEGTPEEVAKVKA 926
|
|
| BCA_ABC_TP_C |
pfam12399 |
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in ... |
225-248 |
5.67e-07 |
|
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP dependent branched-chain amino acid transporter. This domain is essential for LPS transport, through critical interactions with Walker A and switch helix domains.
Pssm-ID: 463560 Cd Length: 25 Bit Score: 44.93 E-value: 5.67e-07
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
4-206 |
6.02e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 49.89 E-value: 6.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVyfkgqeitklSISDRTRLGIGR 83
Cdd:PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV----------SLDPNERLGKLR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 84 SFQLTniFPELTVLENV-------------RLSVQSFVQ----DYYSFFPSSAKFKQQVG---EAR--RFLKTVLLQEKE 141
Cdd:PRK15064 71 QDQFA--FEEFTVLDTVimghtelwevkqeRDRIYALPEmseeDGMKVADLEVKFAEMDGytaEARagELLLGVGIPEEQ 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 142 HV-LAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKkhpeSTIVLIEH 206
Cdd:PRK15064 149 HYgLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERN----STMIIISH 210
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
19-225 |
1.12e-06 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 48.70 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQeitklsisdrtrlgIGRSFQLTNIFPElTVLE 98
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR--------------ISFSSQFSWIMPG-TIKE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 99 NVRLSVqSFVQDYYSFFPSSAKFKQQVGEARRFLKTVLLQEkehvlAKDLAHGEKRKLELAMLLALKTDVLLLDEPTAGI 178
Cdd:cd03291 117 NIIFGV-SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG-----GITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 984812031 179 SV--EEvpailQVIEN--IKKHPESTIVLIEHKMDMvLGLSDHLIVLFHGE 225
Cdd:cd03291 191 DVftEK-----EIFEScvCKLMANKTRILVTSKMEH-LKKADKILILHEGS 235
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
5-206 |
1.28e-06 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 49.04 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHV-IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGqISP-TKGEVYF-KGQEItkLSISDRTRLGI 81
Cdd:COG4178 363 LALEDLTLRTPDGRPlLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAG-LWPyGSGRIARpAGARV--LFLPQRPYLPL 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 82 G--RSfQLTniFPE----------LTVLENVRLsvqsfvqdyysffpssAKFKQQVGEARRFlktvllqekEHVlakdLA 149
Cdd:COG4178 440 GtlRE-ALL--YPAtaeafsdaelREALEAVGL----------------GHLAERLDEEADW---------DQV----LS 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 150 HGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIEniKKHPESTIVLIEH 206
Cdd:COG4178 488 LGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLR--EELPGTTVISVGH 542
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
17-65 |
1.53e-06 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 48.73 E-value: 1.53e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 984812031 17 HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKG 65
Cdd:PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
5-236 |
1.71e-06 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 48.48 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSF--GEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEItklsisdrtrlgig 82
Cdd:PRK11176 342 IEFRNVTFTYpgKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL-------------- 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 83 RSFQLTNIFPELTVL-ENVRL-------SVQSFVQDYYSffpssakfKQQVGEARRFLKTVLLQEK-EHVL-------AK 146
Cdd:PRK11176 408 RDYTLASLRNQVALVsQNVHLfndtianNIAYARTEQYS--------REQIEEAARMAYAMDFINKmDNGLdtvigenGV 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 147 DLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKhpESTIVLIEHKMDMVLGlSDHLIVLFHGEL 226
Cdd:PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEK-ADEILVVEDGEI 556
|
250
....*....|
gi 984812031 227 LAEGMPEEIM 236
Cdd:PRK11176 557 VERGTHAELL 566
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
19-174 |
2.27e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 48.37 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQeitklsisdrtrlgIGRSFQLTNIFPElTVLE 98
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR--------------ISFSPQTSWIMPG-TIKD 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 99 NVRLSVqSFVQDYYSFFPSSAKFKQQVGearrflktvLLQEKEHVLAKD----LAHGEKRKLELAMLLALKTDVLLLDEP 174
Cdd:TIGR01271 506 NIIFGL-SYDEYRYTSVIKACQLEEDIA---------LFPEKDKTVLGEggitLSGGQRARISLARAVYKDADLYLLDSP 575
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
17-232 |
2.45e-06 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 47.61 E-value: 2.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 17 HHVIKDVNLIVQKGKLISIIGPNGAGKTTLFN----------LLSGQISPTKGEVYFKGQEITKLSISDRTRlgIGRSFQ 86
Cdd:cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINdtlypalarrLHLKKEQPGNHDRIEGLEHIDKVIVIDQSP--IGRTPR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 87 -----LTNIFPEL---------------TVLEnVRLSVQSF-------VQDYYSFFPSSAKFKQQVgearRFLKTVLLQE 139
Cdd:cd03271 86 snpatYTGVFDEIrelfcevckgkrynrETLE-VRYKGKSIadvldmtVEEALEFFENIPKIARKL----QTLCDVGLGY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 140 -KEHVLAKDLAHGEKRKLELAMLLALKTD---VLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDmVLGLS 215
Cdd:cd03271 161 iKLGQPATTLSGGEAQRIKLAKELSKRSTgktLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLD-VIKCA 238
|
250 260
....*....|....*....|...
gi 984812031 216 DHLIVL------FHGELLAEGMP 232
Cdd:cd03271 239 DWIIDLgpeggdGGGQVVASGTP 261
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
20-238 |
2.62e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 48.43 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 20 IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTkgevyfkgqEITKLSIsdrtRLGIGRSFQLTNIFpELTVLEN 99
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---------ETSSVVI----RGSVAYVPQVSWIF-NATVREN 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 100 VRlsvqsFVQDYysffpssakfkqqvgEARRFLKTVLLQEKEHVL----AKDLAH----------GEKRKLELAMLLALK 165
Cdd:PLN03232 699 IL-----FGSDF---------------ESERYWRAIDVTALQHDLdllpGRDLTEigergvnisgGQKQRVSMARAVYSN 758
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 166 TDVLLLDEPtagISVEEVPAILQVIENIKKH--PESTIVLIEHKMDMvLGLSDHLIVLFHGELLAEGMPEEIMKD 238
Cdd:PLN03232 759 SDIYIFDDP---LSALDAHVAHQVFDSCMKDelKGKTRVLVTNQLHF-LPLMDRIILVSEGMIKEEGTFAELSKS 829
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
170-240 |
4.14e-06 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 47.37 E-value: 4.14e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 170 LLDEPTAGISVEEVPAILQVIENIKKHPEsTIVLIEHKMDmVLGLSDHLIVL------FHGELLAEGMPEEIMKDER 240
Cdd:PRK00349 856 ILDEPTTGLHFEDIRKLLEVLHRLVDKGN-TVVVIEHNLD-VIKTADWIIDLgpeggdGGGEIVATGTPEEVAKVEA 930
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
16-230 |
6.77e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 46.77 E-value: 6.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 16 EHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDrtrlgigrsfqltnifpelt 95
Cdd:PRK10261 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGK-------------------- 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 96 vLENVRLSVQSFVQDYYsffpSSAKFKQQVG----------------EARR----FLKTVLLQeKEHVL--AKDLAHGEK 153
Cdd:PRK10261 396 -LQALRRDIQFIFQDPY----ASLDPRQTVGdsimeplrvhgllpgkAAAArvawLLERVGLL-PEHAWryPHEFSGGQR 469
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 154 RKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
14-224 |
8.57e-06 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 45.33 E-value: 8.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 14 FGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPT---KGEVYFKGqeITKLSISDRTRLGIGRSFQLTNI 90
Cdd:cd03233 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNG--IPYKEFAEKYPGEIIYVSEEDVH 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 91 FPELTVLENVRLSVQsfvqdyysffpssakfkqqvgearrflktvlLQEKEHVlaKDLAHGEKRKLELAMLLALKTDVLL 170
Cdd:cd03233 95 FPTLTVRETLDFALR-------------------------------CKGNEFV--RGISGGERKRVSIAEALVSRASVLC 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 984812031 171 LDEPTAGISVEEVPAILQVIENIKKHPESTIVL--------IEHKMDMVLGLSDHLIVlFHG 224
Cdd:cd03233 142 WDNSTRGLDSSTALEILKCIRTMADVLKTTTFVslyqasdeIYDLFDKVLVLYEGRQI-YYG 202
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
20-74 |
1.50e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 45.19 E-value: 1.50e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 984812031 20 IKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGqEITKLSIS 74
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAIS 93
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
27-209 |
1.77e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 45.55 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 27 VQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKG--------QEITKLSIS--------DRTRLGIGRSFQLTNI 90
Cdd:PRK10636 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGnwqlawvnQETPALPQPaleyvidgDREYRQLEAQLHDANE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 91 FPELTVLENVRLSVQSFvqDYYSFFPSSAKFKQQVGearrFLKTVLLQEkehvlAKDLAHGEKRKLELAMLLALKTDVLL 170
Cdd:PRK10636 104 RNDGHAIATIHGKLDAI--DAWTIRSRAASLLHGLG----FSNEQLERP-----VSDFSGGWRMRLNLAQALICRSDLLL 172
|
170 180 190
....*....|....*....|....*....|....*....
gi 984812031 171 LDEPTAGISVEevpAILQVIENIKKHPeSTIVLIEHKMD 209
Cdd:PRK10636 173 LDEPTNHLDLD---AVIWLEKWLKSYQ-GTLILISHDRD 207
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
148-219 |
3.80e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 42.73 E-value: 3.80e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 148 LAHGEKRKLELAMLLALKT----DVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLgLSDHLI 219
Cdd:cd03227 78 LSGGEKELSALALILALASlkprPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLI 151
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
145-248 |
4.81e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 44.23 E-value: 4.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 145 AKDLAHGEKRKLELAMLLALK-TDVL-LLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLgLSDHLIVL- 221
Cdd:TIGR00630 486 AGTLSGGEAQRIRLATQIGSGlTGVLyVLDEPSIGLHQRDNRRLINTLKRLRDL-GNTLIVVEHDEDTIR-AADYVIDIg 563
|
90 100 110
....*....|....*....|....*....|...
gi 984812031 222 -----FHGELLAEGMPEEIMKDER-VQSAYLGG 248
Cdd:TIGR00630 564 pgageHGGEVVASGTPEEILANPDsLTGQYLSG 596
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1-235 |
4.91e-05 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 43.53 E-value: 4.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 1 MTHLLETKNLSVSfGEHHVIKDVNLIVQKGKLISIIGPNGAGKT----TLFNLLSGQISPTKGEVYFKGQEITKLSISDR 76
Cdd:PRK10418 1 MPQQIELRNIALQ-AAQPLVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 77 TrlgigrsfqltnifpELTVLENVRlSVQSFVQDYYSFFPSSAKFKQQVGEARRF---LKTVLLQEKEHVL---AKDLAH 150
Cdd:PRK10418 80 K---------------IATIMQNPR-SAFNPLHTMHTHARETCLALGKPADDATLtaaLEAVGLENAARVLklyPFEMSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 151 GEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEG 230
Cdd:PRK10418 144 GMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
....*
gi 984812031 231 MPEEI 235
Cdd:PRK10418 224 DVETL 228
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
19-62 |
4.97e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 44.38 E-value: 4.97e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVY 62
Cdd:PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW 718
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
13-206 |
5.99e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 42.98 E-value: 5.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 13 SFGEHHVI---KDVNLIVqkgklisiiGPNGAGKTTLFnllsgqisptkgevyfkgqEITKLSISDRTRLGIGRSFQLTN 89
Cdd:cd03240 11 SFHERSEIeffSPLTLIV---------GQNGAGKTTII-------------------EALKYALTGELPPNSKGGAHDPK 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 90 IFPELTVLENVRLSVQSFVQDYYSFFPSSAKFKQQV----GEarrfLKTVLLQEKEHVLAkdlahGEKRKLELAMLLAL- 164
Cdd:cd03240 63 LIREGEVRAQVKLAFENANGKKYTITRSLAILENVIfchqGE----SNWPLLDMRGRCSG-----GEKVLASLIIRLALa 133
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 984812031 165 -----KTDVLLLDEPTAGISVEEV-PAILQVIENIKKHPESTIVLIEH 206
Cdd:cd03240 134 etfgsNCGILALDEPTTNLDEENIeESLAEIIEERKSQKNFQLIVITH 181
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
4-52 |
6.02e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 43.85 E-value: 6.02e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSG 52
Cdd:PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
5-235 |
7.48e-05 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 43.19 E-value: 7.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 5 LETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAG--KTTLFNLLSGQIS---PTKGEVYFKGQEITKLSISDRTRL 79
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPDAgrrPWRF*TWCANRRALRRTIG*HRPV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 80 GIGRSFQLTNifpeltvLENVRLSVQSFvqdyysffpsSAKFKQQVGEARRFLKTVLLQEKEHVLAKDLAHGEKRKLELA 159
Cdd:NF000106 94 R*GRRESFSG-------RENLYMIGR*L----------DLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984812031 160 MLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVLGLSDHLIVLFHGELLAEGMPEEI 235
Cdd:NF000106 157 ASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
21-224 |
1.11e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 43.31 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 21 KDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVY---------FKGQEITKLSISDRTRLGIGRSFQLTnif 91
Cdd:PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFrsakvrmavFSQHHVDGLDLSSNPLLYMMRCFPGV--- 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 92 PEltvlENVRLSVQSF-------VQDYYSffpssakfkqqvgearrflktvllqekehvlakdLAHGEKRKLELAMLLAL 164
Cdd:PLN03073 603 PE----QKLRAHLGSFgvtgnlaLQPMYT----------------------------------LSGGQKSRVAFAKITFK 644
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 165 KTDVLLLDEPTAGISVEEVPAILQVIENIkkhpESTIVLIEHKMDMVLGLSDHLIVL-------FHG 224
Cdd:PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVsegkvtpFHG 707
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
4-206 |
1.25e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 43.02 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 4 LLETKNLSVSFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEV-YFKGQEITKL----------S 72
Cdd:PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIiYEQDLIVARLqqdpprnvegT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 73 ISDRTRLGIGRSFQLTNIFPELTVLenvrlsvqsFVQDYysffpsSAKFKQQVGEarrflktvlLQEK-EH--------- 142
Cdd:PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHL---------VETDP------SEKNLNELAK---------LQEQlDHhnlwqlenr 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984812031 143 ---VLAK----------DLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVpailQVIENIKKHPESTIVLIEH 206
Cdd:PRK11147 139 ineVLAQlgldpdaalsSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETI----EWLEGFLKTFQGSIIFISH 211
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
146-236 |
1.98e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 42.32 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 146 KDLAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEHKMDMVlGLSDHLIVLFHGE 225
Cdd:PTZ00265 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASI-KRSDKIVVFNNPD 1435
|
90
....*....|....*.
gi 984812031 226 -----LLAEGMPEEIM 236
Cdd:PTZ00265 1436 rtgsfVQAHGTHEELL 1451
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
148-246 |
2.94e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 42.12 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 148 LAHGEKRKLELAMLLA--LKTDVLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMVlGLSDHLI------ 219
Cdd:PRK00635 477 LSGGEQERTALAKHLGaeLIGITYILDEPSIGLHPQDTHKLINVIKKLRDQ-GNTVLLVEHDEQMI-SLADRIIdigpga 554
|
90 100
....*....|....*....|....*...
gi 984812031 220 VLFHGELLAEGMPEE-IMKDERVQSAYL 246
Cdd:PRK00635 555 GIFGGEVLFNGSPREfLAKSDSLTAKYL 582
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
19-236 |
4.16e-04 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 41.37 E-value: 4.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPT---KGEVYFKGQEI-------TKLSISdRTRLGIGrsfqlt 88
Cdd:PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSlkvSGEITYNGYRLnefvprkTSAYIS-QNDVHVG------ 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 89 nifpELTVLENVRLSVQ-SFVQDYYSFFPSSAKFKQQVG-----EARRFLKTVLLQEKEHVLAKD--------------- 147
Cdd:PLN03140 253 ----VMTVKETLDFSARcQGVGTRYDLLSELARREKDAGifpeaEVDLFMKATAMEGVKSSLITDytlkilgldickdti 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 148 --------LAHGEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVL-IEHKMDMVLGLSDHL 218
Cdd:PLN03140 329 vgdemirgISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMsLLQPAPETFDLFDDI 408
|
250
....*....|....*...
gi 984812031 219 IVLFHGELLAEGMPEEIM 236
Cdd:PLN03140 409 ILLSEGQIVYQGPRDHIL 426
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
29-172 |
6.72e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.28 E-value: 6.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 29 KGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGRSFQLTNIFPEL--TVLENVRLSVQS 106
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRlrLALALARKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 107 --FVQDYYSFFPSSAKFKQQVGEARRFLKTVLLQEKEHVLAkdLAHGEKRKLELAMLLALKTDVLLLD 172
Cdd:smart00382 81 vlILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL--TTNDEKDLGPALLRRRFDRRIVLLL 146
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
148-230 |
1.02e-03 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 38.84 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 148 LAHGEKRKLELAMLLALKTD--VLLLDEPTAGISVEEVPAILQVIENIKKHpESTIVLIEHKMDMvLGLSDHLIVLFH-- 223
Cdd:cd03238 88 LSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLDV-LSSADWIIDFGPgs 165
|
90
....*....|.
gi 984812031 224 ----GELLAEG 230
Cdd:cd03238 166 gksgGKVVFSG 176
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
20-174 |
1.11e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 39.60 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 20 IKDVNLIVQKGKLIsIIGPNGAGKTTLFNLLSGQISPTKG---------------------EVYFKG--QEITKLSISDR 76
Cdd:COG3593 14 IKDLSIELSDDLTV-LVGENNSGKSSILEALRLLLGPSSSrkfdeedfylgddpdlpeieiELTFGSllSRLLRLLLKEE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 77 TRLGIgrSFQLTNIFPELT-VLENVRLSVQSFVQDYysFFPSSAKFKQQVGEARRFLK--TVLLQEKEHVLAKDLAHGEK 153
Cdd:COG3593 93 DKEEL--EEALEELNEELKeALKALNELLSEYLKEL--LDGLDLELELSLDELEDLLKslSLRIEDGKELPLDRLGSGFQ 168
|
170 180
....*....|....*....|....*...
gi 984812031 154 RKLELAMLLAL-------KTDVLLLDEP 174
Cdd:COG3593 169 RLILLALLSALaelkrapANPILLIEEP 196
|
|
| Era_like |
cd00880 |
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family ... |
35-88 |
1.17e-03 |
|
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.
Pssm-ID: 206646 [Multi-domain] Cd Length: 161 Bit Score: 38.38 E-value: 1.17e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 984812031 35 IIGPNGAGKTTLFNLLSGQ----ISPTKGEvyfkgqeiTKLSISDRTRLGIGRSFQLT 88
Cdd:cd00880 2 IFGRPNVGKSSLLNALLGQnvgiVSPIPGT--------TRDPVRKEWELLPLGPVVLI 51
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
19-181 |
1.19e-03 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 39.73 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLsGQISPTKGEVYFKGQEITKLSISDRTRLGIGrSFQLTNIFPEltvle 98
Cdd:TIGR00954 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPD----- 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 99 nvrlSVQSFvqdyysffpssakFKQQVGEA--RRFLKTVLLqekEHVLAKD------------LAHGEKRKLELAMLLAL 164
Cdd:TIGR00954 540 ----SSEDM-------------KRRGLSDKdlEQILDNVQL---THILEREggwsavqdwmdvLSGGEKQRIAMARLFYH 599
|
170
....*....|....*..
gi 984812031 165 KTDVLLLDEPTAGISVE 181
Cdd:TIGR00954 600 KPQFAILDECTSAVSVD 616
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
19-211 |
1.84e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 39.63 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKGEVYFKGQEITKLSISDRTRLGIGRSFQLTNIFPElTVLE 98
Cdd:PTZ00265 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKN 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 99 NVRLSVQS-----FVQDYY------------SFFPSSAKFKQQVG------------EARRFLKTVLLQEKEHVLAKDLA 149
Cdd:PTZ00265 479 NIKYSLYSlkdleALSNYYnedgndsqenknKRNSCRAKCAGDLNdmsnttdsneliEMRKNYQTIKDSEVVDVSKKVLI 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 150 H-----------------------GEKRKLELAMLLALKTDVLLLDEPTAGISVEEVPAILQVIENIKKHPESTIVLIEH 206
Cdd:PTZ00265 559 HdfvsalpdkyetlvgsnasklsgGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH 638
|
....*
gi 984812031 207 KMDMV 211
Cdd:PTZ00265 639 RLSTI 643
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
19-98 |
5.26e-03 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 38.17 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984812031 19 VIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTK----GEVYFKGqeITKLSISDRTRLGIGRSFQLTNIFPEL 94
Cdd:TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHigveGVITYDG--ITPEEIKKHYRGDVVYNAETDVHFPHL 153
|
....
gi 984812031 95 TVLE 98
Cdd:TIGR00956 154 TVGE 157
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
13-59 |
8.07e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 37.41 E-value: 8.07e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 984812031 13 SFGEHHVIKDVNLIVQKGKLISIIGPNGAGKTTLFNLLSGQISPTKG 59
Cdd:PLN03130 626 SKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSD 672
|
|
| |
