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Conserved domains on  [gi|983493255|ref|WP_060647111|]
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D-alanyl-D-alanine endopeptidase [Salmonella enterica]

Protein Classification

D-alanyl-D-alanine endopeptidase( domain architecture ID 10013859)

D-alanyl-D-alanine endopeptidase specifically hydrolyzes the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi and may play a specialized role in remodeling the cell wall

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
pbpG PRK11669
D-alanyl-D-alanine endopeptidase; Provisional
2-292 0e+00

D-alanyl-D-alanine endopeptidase; Provisional


:

Pssm-ID: 236952  Cd Length: 306  Bit Score: 593.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255   2 LKFRASFLSLALMLA-VPFAPQAVAKTAATTAASQP-EIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD 79
Cdd:PRK11669   1 MKFRVSLLSLLLLLAgVPFAPQAVAKTAAATTASQPqEIASGSAMVVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  80 ARLPLDEILKVDISQTPEMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHT 159
Cdd:PRK11669  81 AKLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMTNT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 160 RFVEPTGLSIHNVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAG 239
Cdd:PRK11669 161 RYVEPTGLSIHNVSTARDLTKLLIASKQYPLIGQLSTTREKTATFRKPNYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAG 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 983493255 240 HCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPASALSY 292
Cdd:PRK11669 241 HCLVMRTVINNRPVALVVLDAFGKYTHFADASRLRTWIETGKVTPVPAAALSY 293
 
Name Accession Description Interval E-value
pbpG PRK11669
D-alanyl-D-alanine endopeptidase; Provisional
2-292 0e+00

D-alanyl-D-alanine endopeptidase; Provisional


Pssm-ID: 236952  Cd Length: 306  Bit Score: 593.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255   2 LKFRASFLSLALMLA-VPFAPQAVAKTAATTAASQP-EIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD 79
Cdd:PRK11669   1 MKFRVSLLSLLLLLAgVPFAPQAVAKTAAATTASQPqEIASGSAMVVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  80 ARLPLDEILKVDISQTPEMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHT 159
Cdd:PRK11669  81 AKLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMTNT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 160 RFVEPTGLSIHNVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAG 239
Cdd:PRK11669 161 RYVEPTGLSIHNVSTARDLTKLLIASKQYPLIGQLSTTREKTATFRKPNYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAG 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 983493255 240 HCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPASALSY 292
Cdd:PRK11669 241 HCLVMRTVINNRPVALVVLDAFGKYTHFADASRLRTWIETGKVTPVPAAALSY 293
Peptidase_S11 pfam00768
D-alanyl-D-alanine carboxypeptidase;
34-261 5.16e-104

D-alanyl-D-alanine carboxypeptidase;


Pssm-ID: 425859 [Multi-domain]  Cd Length: 234  Bit Score: 303.92  E-value: 5.16e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255   34 SQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLP--LDEILKVDISQTPEMKGV---YSRVR-L 107
Cdd:pfam00768   2 SAPEIAAKSAILVDYNTGKVLYEKNPDQVRPIASITKLMTAYVVLEALKAgkIKEDDMVTISEDAWATGNpgsSNIFLkP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  108 NSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGLSIHN-VSTARDLTKLLIATK 186
Cdd:pfam00768  82 GSQVSVKDLLRGALVSSGNDAAVALAEHIAGSEKAFVK*MNAKAKELGLKNTRFVNPTGLDAHGqYSSARDMAILAKALI 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 983493255  187 QYpLIGQLSTTREDMATFSHpAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAF 261
Cdd:pfam00768 162 KD-LPEELSITKEKSFTFRG-INKINQRNRNGLLWDKTWNVDGLKTGYTNEAGYCLVASATKGGMRLISVVMGAF 234
DacC COG1686
D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];
7-276 2.51e-86

D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441292 [Multi-domain]  Cd Length: 324  Bit Score: 262.08  E-value: 2.51e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255   7 SFLSLALMLAVPFAPQAVAktaattaaSQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RL 82
Cdd:COG1686    3 KLLLLALLLLLAAAAAAPA--------APPDIAAKSAILIDADTGQVLYEKNADERLPPASLTKLMTAYVVLEAlkagKI 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  83 PLDEILKVDISQTpEMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFV 162
Cdd:COG1686   75 SLDDKVTVSEEAA-RTGGSKMGLKPGEQVTVEDLLKGLLLQSGNDAAVALAEHIAGSEEAFVALMNAKAKELGMTNTHFV 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 163 EPTGLSI-HNVSTARDLTKLLIAT-KQYPLIGQLSTTREdmATFSHPaYTLPFRNTNHLVYRDNWnIQLTKTGFTNAAGH 240
Cdd:COG1686  154 NPTGLPDpGHYSTARDLALLARAAiKDYPEFYEIFSTKE--FTFPNG-RGITLRNTNRLLGRYPG-VDGLKTGYTDAAGY 229
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 983493255 241 CLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
Cdd:COG1686  230 CLVASAKRGGRRLIAVVLGAPSEKARFADAAKLLDY 265
 
Name Accession Description Interval E-value
pbpG PRK11669
D-alanyl-D-alanine endopeptidase; Provisional
2-292 0e+00

D-alanyl-D-alanine endopeptidase; Provisional


Pssm-ID: 236952  Cd Length: 306  Bit Score: 593.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255   2 LKFRASFLSLALMLA-VPFAPQAVAKTAATTAASQP-EIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD 79
Cdd:PRK11669   1 MKFRVSLLSLLLLLAgVPFAPQAVAKTAAATTASQPqEIASGSAMVVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  80 ARLPLDEILKVDISQTPEMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHT 159
Cdd:PRK11669  81 AKLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMTNT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 160 RFVEPTGLSIHNVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAG 239
Cdd:PRK11669 161 RYVEPTGLSIHNVSTARDLTKLLIASKQYPLIGQLSTTREKTATFRKPNYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAG 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 983493255 240 HCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPASALSY 292
Cdd:PRK11669 241 HCLVMRTVINNRPVALVVLDAFGKYTHFADASRLRTWIETGKVTPVPAAALSY 293
Peptidase_S11 pfam00768
D-alanyl-D-alanine carboxypeptidase;
34-261 5.16e-104

D-alanyl-D-alanine carboxypeptidase;


Pssm-ID: 425859 [Multi-domain]  Cd Length: 234  Bit Score: 303.92  E-value: 5.16e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255   34 SQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLP--LDEILKVDISQTPEMKGV---YSRVR-L 107
Cdd:pfam00768   2 SAPEIAAKSAILVDYNTGKVLYEKNPDQVRPIASITKLMTAYVVLEALKAgkIKEDDMVTISEDAWATGNpgsSNIFLkP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  108 NSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGLSIHN-VSTARDLTKLLIATK 186
Cdd:pfam00768  82 GSQVSVKDLLRGALVSSGNDAAVALAEHIAGSEKAFVK*MNAKAKELGLKNTRFVNPTGLDAHGqYSSARDMAILAKALI 161
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 983493255  187 QYpLIGQLSTTREDMATFSHpAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAF 261
Cdd:pfam00768 162 KD-LPEELSITKEKSFTFRG-INKINQRNRNGLLWDKTWNVDGLKTGYTNEAGYCLVASATKGGMRLISVVMGAF 234
DacC COG1686
D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];
7-276 2.51e-86

D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441292 [Multi-domain]  Cd Length: 324  Bit Score: 262.08  E-value: 2.51e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255   7 SFLSLALMLAVPFAPQAVAktaattaaSQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RL 82
Cdd:COG1686    3 KLLLLALLLLLAAAAAAPA--------APPDIAAKSAILIDADTGQVLYEKNADERLPPASLTKLMTAYVVLEAlkagKI 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  83 PLDEILKVDISQTpEMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFV 162
Cdd:COG1686   75 SLDDKVTVSEEAA-RTGGSKMGLKPGEQVTVEDLLKGLLLQSGNDAAVALAEHIAGSEEAFVALMNAKAKELGMTNTHFV 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 163 EPTGLSI-HNVSTARDLTKLLIAT-KQYPLIGQLSTTREdmATFSHPaYTLPFRNTNHLVYRDNWnIQLTKTGFTNAAGH 240
Cdd:COG1686  154 NPTGLPDpGHYSTARDLALLARAAiKDYPEFYEIFSTKE--FTFPNG-RGITLRNTNRLLGRYPG-VDGLKTGYTDAAGY 229
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 983493255 241 CLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
Cdd:COG1686  230 CLVASAKRGGRRLIAVVLGAPSEKARFADAAKLLDY 265
PRK10001 PRK10001
serine-type D-Ala-D-Ala carboxypeptidase;
1-276 2.17e-17

serine-type D-Ala-D-Ala carboxypeptidase;


Pssm-ID: 182189 [Multi-domain]  Cd Length: 400  Bit Score: 81.96  E-value: 2.17e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255   1 MLKFRASFLSLAL--MLAVPFAPqavAKTAATTAASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVL 78
Cdd:PRK10001   1 MTQYSSLLRGLAAgsAFLFLFAP---TAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVG 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  79 DA----RLPLDEILKVD----ISQTPEMKGvySRV---RLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAM 147
Cdd:PRK10001  78 QAlkadKIKLTDMVTVGkdawATGNPALRG--SSVmflKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLM 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 148 NAKAKALGMTHTRFVEPTGLSI-HNVSTARD---LTKLLIatkqYPLIGQLSTTREDMATFSHpaytLPFRNTNHLVYRD 223
Cdd:PRK10001 156 NGYAKKLGLTNTTFQTVHGLDApGQFSTARDmalLGKALI----HDVPEEYAIHKEKEFTFNK----IRQPNRNRLLWSS 227
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 983493255 224 NWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
Cdd:PRK10001 228 NLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTW 280
dacD PRK11397
serine-type D-Ala-D-Ala carboxypeptidase DacD;
2-276 3.53e-17

serine-type D-Ala-D-Ala carboxypeptidase DacD;


Pssm-ID: 183117 [Multi-domain]  Cd Length: 388  Bit Score: 81.02  E-value: 3.53e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255   2 LKFR----ASFLSLALMLA-----VPFAPQavaktaattaasQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLM 72
Cdd:PRK11397   1 LKRRliiaASLFAFNLSSAfaaenIPFSPQ------------PPAIDAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLM 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  73 TAMVV---LDA-RLPLDEILKVD----ISQTPEMKGVySRVRLNS--EISRKNMLLLALMSSENRAAASLAHYYPGGYNA 142
Cdd:PRK11397  69 TGYVVdraIDShRITPDDIVTVGrdawAKDNPVFVGS-SLMFLKEgdRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQ 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 143 FIKAMNAKAKALGMTHTRFVEPTGLSI-HNVSTARDLTKLLIAT-----KQYPLIGQLSTTREDMATfshpaytlpfRNT 216
Cdd:PRK11397 148 FVEMMNNYVEKLHLKDTHFETVHGLDApGQHSSAYDLAVLSRAIihgepEFYHMYSEKSLTWNGITQ----------QNR 217
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 217 NHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
Cdd:PRK11397 218 NGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEQARKLLRW 277
PRK10793 PRK10793
D-alanyl-D-alanine carboxypeptidase fraction A; Provisional
36-276 1.36e-13

D-alanyl-D-alanine carboxypeptidase fraction A; Provisional


Pssm-ID: 182736 [Multi-domain]  Cd Length: 403  Bit Score: 70.65  E-value: 1.36e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  36 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKV--DISQT--PEMKGVY----- 102
Cdd:PRK10793  42 PQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAmkagKFKETDLVTVgnDAWATgnPVFKGSSlmflk 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 103 --SRVRLnSEISRKNMLllalmSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGLSIH-NVSTARDLT 179
Cdd:PRK10793 122 pgMQVPV-SQLIRGINL-----QSGNDACVAMADYVAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADgQYSSARDMA 195
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 180 klliatkqypLIGQ--LSTTREDMATFSHPAYT---LPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVA 254
Cdd:PRK10793 196 ----------LIGQalIRDVPNEYAIYKEKEFTfngIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLI 265
                        250       260
                 ....*....|....*....|..
gi 983493255 255 LVVMDAFGKYTHFADASRLRTW 276
Cdd:PRK10793 266 SAVMGGRTFKGRETESKKLLTW 287
Beta-lactamase2 pfam13354
Beta-lactamase enzyme family; This is the catalytic domain of class A beta-lactamases. It is ...
42-198 8.57e-11

Beta-lactamase enzyme family; This is the catalytic domain of class A beta-lactamases. It is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.


Pssm-ID: 463854 [Multi-domain]  Cd Length: 215  Bit Score: 60.75  E-value: 8.57e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255   42 SAMIVDLNTNKVIYSNhPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTPEMKGVYSRVRLNSEISRKNML 117
Cdd:pfam13354   1 GIYVRDLDTGEELGIN-GDRSFPAASTIKVPILLAVLEQvdegKLSLDERLTVTAEDKVGGSGILQYLPDGSQLSLRDLL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  118 LLALMSSENRAAASLAhYYPGgynafIKAMNAKAKALGMTHTRFVEPTGLSIH------NVSTARDLTKLLIATKQYPLI 191
Cdd:pfam13354  80 TLMIAVSDNTATNLLI-DRLG-----LEAVNARLRALGLRDTRLRRKLPDLRAadkggtNTTTARDMAKLLEALYRGELL 153

                  ....*..
gi 983493255  192 GQLSTTR 198
Cdd:pfam13354 154 SPESTDR 160
PenP COG2367
Beta-lactamase class A [Defense mechanisms];
39-182 4.23e-07

Beta-lactamase class A [Defense mechanisms];


Pssm-ID: 441934 [Multi-domain]  Cd Length: 276  Bit Score: 50.28  E-value: 4.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255  39 ASGSAMIVDLNTNKVIySNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVdisqTPEMK----GVYSRVRLNSE 110
Cdd:COG2367   33 GRVGVYVLDLDTGETV-GINADERFPAASTFKLPVLAAVLRQvdagKLSLDERVTL----TPEDLvggsGILQKLPDGTG 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983493255 111 ISRKNMLLLALMSSENRAAaslahyypggyNAFI-----KAMNAKAKALGMTHTRFV--EPTGLSI----HNVSTARDLT 179
Cdd:COG2367  108 LTLRELAELMITVSDNTAT-----------NLLLrllgpDAVNAFLRSLGLTDTRLDrkEPDLNELpgdgRNTTTPRDMA 176

                 ...
gi 983493255 180 KLL 182
Cdd:COG2367  177 RLL 179
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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