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Conserved domains on  [gi|981368628|ref|WP_059583142|]
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ABC transporter permease [Burkholderia vietnamiensis]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 22-249 3.82e-42

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 145.25  E-value: 3.82e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  22 RPRIGRLLLQALVAAFGLYLLLPIALLLVGSVGQSWTNTLLPAGFTAHWFTDLAANRGFTRAFGVSLMVALACCALNATI 101
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 102 GLPLAYALHHRAQAGGGLAtRIVMLMPIAVPVLTLGFGYIAIFSgdTLPWLGTLPLMIAAHAVLTLPYLLQTLLSDLRHL 181
Cdd:COG1177   81 GTPAALALARYRFRGRRLL-LALLLLPLVVPGIVLGVALLLLFS--ALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGF 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 981368628 182 GlARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQISNLIAGFRYRNYPIVLLQA 249
Cdd:COG1177  158 D-PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSM 224
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 22-249 3.82e-42

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 145.25  E-value: 3.82e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  22 RPRIGRLLLQALVAAFGLYLLLPIALLLVGSVGQSWTNTLLPAGFTAHWFTDLAANRGFTRAFGVSLMVALACCALNATI 101
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 102 GLPLAYALHHRAQAGGGLAtRIVMLMPIAVPVLTLGFGYIAIFSgdTLPWLGTLPLMIAAHAVLTLPYLLQTLLSDLRHL 181
Cdd:COG1177   81 GTPAALALARYRFRGRRLL-LALLLLPLVVPGIVLGVALLLLFS--ALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGF 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 981368628 182 GlARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQISNLIAGFRYRNYPIVLLQA 249
Cdd:COG1177  158 D-PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSM 224
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 71-250 7.27e-15

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 74.33  E-value: 7.27e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628   71 FTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHhRAQAGGGLATRIVMLMPIAVPVLTLGFGYIAIFSGDTL- 149
Cdd:TIGR03262  43 FAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALT-RSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLl 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  150 -PWLGTLPL-----MIAAHAVLTLPYLLQTLLSDLRhLGLARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAAL 223
Cdd:TIGR03262 122 kGLLGGFSIygfwgIVIGEVFYTFPHALMILVTALS-LADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTL 200

                         170       180
                  ....*....|....*....|....*..
gi 981368628  224 SIGEFQISNLIAGfryrNYPIVLLQAF 250
Cdd:TIGR03262 201 VITDFGVPKVIGG----DYNVLATDIY 223
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 62-248 3.82e-11

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 62.93  E-value: 3.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  62 LPAGFTAHWFtDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYA---LHHRAQAGGGLATRIVMLMPIAVPVLTLGF 138
Cdd:PRK09433 300 VVSGLNASLL-RVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSsreLRLRQRKLAAQALELSGMLILAMPGIVLAT 378

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 139 GYIAIFSGDTLPWLGTLPLMIAAHAVLTLPYLLQTLLSDLRHLgLARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLV 218
Cdd:PRK09433 379 GLFLLLRNTTDLPASALGIVILTNALMALPYALRVLEPPMRDI-AARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFA 457

                        170       180       190
                 ....*....|....*....|....*....|
gi 981368628 219 MVAALSIGEFQISNLIAGFRYRNYPIVLLQ 248
Cdd:PRK09433 458 FACALSLGDFGVIALFGSQDFRTLPFLLYQ 487
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 84-256 7.05e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 54.21  E-value: 7.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  84 FGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLMpIAVPVLTLGFGYIAIFS--GDTLPWLGTLPLMIAA 161
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLL-LSLPSLVLGLLLVLLFGvlLGWGILPGLGLPALIL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 162 HAVLTLPYLLQTLLSDLRHLGLARLEAcAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQISNLIAGFRYRN 241
Cdd:cd06261   80 ALLLIAPFARLIRRAALESIPKDLVEA-ARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPG 158

                        170
                 ....*....|....*
gi 981368628 242 YPIVLLQAFYGATGM 256
Cdd:cd06261  159 PGTGLLLIFAILFPG 173
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 22-249 3.82e-42

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 145.25  E-value: 3.82e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  22 RPRIGRLLLQALVAAFGLYLLLPIALLLVGSVGQSWTNTLLPAGFTAHWFTDLAANRGFTRAFGVSLMVALACCALNATI 101
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 102 GLPLAYALHHRAQAGGGLAtRIVMLMPIAVPVLTLGFGYIAIFSgdTLPWLGTLPLMIAAHAVLTLPYLLQTLLSDLRHL 181
Cdd:COG1177   81 GTPAALALARYRFRGRRLL-LALLLLPLVVPGIVLGVALLLLFS--ALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGF 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 981368628 182 GlARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQISNLIAGFRYRNYPIVLLQA 249
Cdd:COG1177  158 D-PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSM 224
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
59-257 1.65e-24

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 102.55  E-value: 1.65e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  59 NTLLPAGFTAHWFTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLmPIAVPVLTLGF 138
Cdd:COG1178  315 TKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAML-PYAVPGIVLGL 393

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 139 GYIAIFSGDTLPWL-GTLPLMIAAHAVLTLPYLLQTLLSDLRHLGlARLEACAATLGATPLRQFFTIVLPNLRHSLFSGL 217
Cdd:COG1178  394 GLLLLFNRPLPLLLyGTLAILVLAYVVRFLPFALRSLEAALAQID-PSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAA 472

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 981368628 218 VMVAALSIGEFQISNLIAGFRYRNYPIVLLQAF-YGATGMA 257
Cdd:COG1178  473 LLVFVTSMKELSATLLLRPPGFETLAVLIYQLAsSGRYGEA 513
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 83-236 1.05e-16

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 77.01  E-value: 1.05e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  83 AFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLmPIAVPVLTLGFGYIAIFS-----GDTLPWLGTLPL 157
Cdd:COG4149    8 ALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTL-PLVLPPTVLGFYLLLLFGrngplGQLLEELFGISL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 158 M------IAAHAVLTLPYLLQTLLSDLRHLGlARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQIS 231
Cdd:COG4149   87 VftwtgaVLASVVVSLPLMVQPLRAAFEAVD-PRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEFGAT 165


                 ....*
gi 981368628 232 NLIAG 236
Cdd:COG4149  166 LMFAG 170
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
70-236 1.28e-16

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 79.43  E-value: 1.28e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  70 WFTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLAtRIVMLMPIAVPVLTLGFGYIAIFS---- 145
Cdd:COG1178   42 NFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLL-RWLLLLPLALPPYVVALAWIALFGpngl 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 146 ---------GDTLPWLGTLPLMIAAHAVLTLPYLLQTLLSDLRHLGlARLEACAATLGATPLRQFFTIVLPNLRHSLFSG 216
Cdd:COG1178  121 lntllralfGLEPPDIYGLGGIILVLVLFNYPYVYLLLRAALRSID-ASLEEAARSLGASPWRAFRRVTLPLLRPAIAAG 199

                        170       180
                 ....*....|....*....|
gi 981368628 217 LVMVAALSIGEFQISNLIAG 236
Cdd:COG1178  200 ALLVFLLCLADFGTPLVLGG 219
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 71-236 1.50e-15

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 74.40  E-value: 1.50e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  71 FTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLmPIAVPVLTLGFGYIAIFS----- 145
Cdd:COG0555   43 FWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDL-PFALPTAVAGIALLLLFGpngwl 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 146 GDTLPWLG-----TLPLMIAAHAVLTLPYLLQTLLSDLRHLGlARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMV 220
Cdd:COG0555  122 GQLLAPLGikvafTPLGIVLAQTFVSLPFVVRTVQPVLEELD-PELEEAAATLGASRWQTFRRVILPLLLPALLTGFALA 200

                        170
                 ....*....|....*.
gi 981368628 221 AALSIGEFQISNLIAG 236
Cdd:COG0555  201 FARALGEFGAVIFIAG 216
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 71-250 7.27e-15

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 74.33  E-value: 7.27e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628   71 FTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHhRAQAGGGLATRIVMLMPIAVPVLTLGFGYIAIFSGDTL- 149
Cdd:TIGR03262  43 FAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALT-RSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLl 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  150 -PWLGTLPL-----MIAAHAVLTLPYLLQTLLSDLRhLGLARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAAL 223
Cdd:TIGR03262 122 kGLLGGFSIygfwgIVIGEVFYTFPHALMILVTALS-LADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTL 200

                         170       180
                  ....*....|....*....|....*..
gi 981368628  224 SIGEFQISNLIAGfryrNYPIVLLQAF 250
Cdd:TIGR03262 201 VITDFGVPKVIGG----DYNVLATDIY 223
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 52-253 6.80e-13

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 67.09  E-value: 6.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  52 SVGQSWTNTLLPAGFTAHWFTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLmPIAV 131
Cdd:COG1176   37 SFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVIL-PFWT 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 132 PVLTLGFGYIAIFS---------------GDTLPWLGTLPLMIAAHAVLTLPYLLQTLLSDLRHLGLARLEAcAATLGAT 196
Cdd:COG1176  116 SFLVRTYAWIVLLGrngllnslllalgliDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEA-ARDLGAS 194

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 981368628 197 PLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQISNLIAGFRYRNYPIVLLQAFYGA 253
Cdd:COG1176  195 PWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSA 251
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 86-236 1.63e-12

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 64.96  E-value: 1.63e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628   86 VSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLmPIAVPVLTLGFGYIAIFS-----GDTLPWLG-----TL 155
Cdd:TIGR02141   2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTL-PLVLPPTVLGFYLLIAFGpngpiGKLLELFGislvfTF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  156 PLMIAAHAVLTLPYLLQTLLSDLRHLGlARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQISNLIA 235
Cdd:TIGR02141  81 TGAVLASVIVSFPLMVQPIRAAFEAVD-PDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159


                  .
gi 981368628  236 G 236
Cdd:TIGR02141 160 G 160
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 62-248 3.82e-11

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 62.93  E-value: 3.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  62 LPAGFTAHWFtDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYA---LHHRAQAGGGLATRIVMLMPIAVPVLTLGF 138
Cdd:PRK09433 300 VVSGLNASLL-RVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSsreLRLRQRKLAAQALELSGMLILAMPGIVLAT 378

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 139 GYIAIFSGDTLPWLGTLPLMIAAHAVLTLPYLLQTLLSDLRHLgLARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLV 218
Cdd:PRK09433 379 GLFLLLRNTTDLPASALGIVILTNALMALPYALRVLEPPMRDI-AARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFA 457

                        170       180       190
                 ....*....|....*....|....*....|
gi 981368628 219 MVAALSIGEFQISNLIAGFRYRNYPIVLLQ 248
Cdd:PRK09433 458 FACALSLGDFGVIALFGSQDFRTLPFLLYQ 487
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 83-228 3.77e-09

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 56.24  E-value: 3.77e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628   83 AFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLmPIAVPVLTLGFGYIAIF--SGDTLPWLG------- 153
Cdd:TIGR02140  48 AIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTIIDL-PFSVSPVVAGLIFVLLYgsQGWLGPWLEdldikii 126

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 981368628  154 -TLPLMIAAHAVLTLPYLLQTLLSDLRHLGLARLEAcAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEF 228
Cdd:TIGR02140 127 fSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEA-ALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEF 201
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 84-256 7.05e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 54.21  E-value: 7.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  84 FGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLMpIAVPVLTLGFGYIAIFS--GDTLPWLGTLPLMIAA 161
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLL-LSLPSLVLGLLLVLLFGvlLGWGILPGLGLPALIL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 162 HAVLTLPYLLQTLLSDLRHLGLARLEAcAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQISNLIAGFRYRN 241
Cdd:cd06261   80 ALLLIAPFARLIRRAALESIPKDLVEA-ARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPG 158

                        170
                 ....*....|....*
gi 981368628 242 YPIVLLQAFYGATGM 256
Cdd:cd06261  159 PGTGLLLIFAILFPG 173
cysT CHL00187
sulfate transport protein; Provisional
 83-236 9.81e-08

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 51.55  E-value: 9.81e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  83 AFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLmPIAVPVLTLGFGYIAIFSGDTL--PWLGTLPLMIA 160
Cdd:CHL00187  56 AYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDL-PFALPTSVAGLTLATVYGDNGWigHLLSHLGIQIV 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 161 AHAV--------LTLPYLLQTLLSDLRHLGlARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQISN 232
Cdd:CHL00187 135 FTKLgvllamifVSFPFVVRTIQPVLQEIE-KELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIV 213


                 ....
gi 981368628 233 LIAG 236
Cdd:CHL00187 214 IISS 217
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 65-244 1.69e-07

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 51.14  E-value: 1.69e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  65 GFTAHWFTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHHR----AQAGGGLaTRIVMLMPIAVpvltLGFGY 140
Cdd:PRK09500  40 GFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYrfrgKKFVSGM-LFVVMMSPDIV----MAISL 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 141 IAIFSGDTLPwLGTLPLMIaAHAVLTLPYLLQTLLSDLRHLGLARLEAcAATLGATPLRQFFTIVLPNLRHSLFSGLVMV 220
Cdd:PRK09500 115 LVLFMLLGIQ-LGFWSLLF-AHITFCLPFVVVTVYSRLKGFDVRMLEA-AKDLGASEFTILRKIILPLALPAVAAGWLLS 191

                        170       180
                 ....*....|....*....|....
gi 981368628 221 AALSIGEFQISNLIAGFRYRNYPI 244
Cdd:PRK09500 192 FTLSLDDVVVSSFVTGPSYEILPL 215
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
71-230 2.32e-07

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 50.90  E-value: 2.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  71 FTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHhRAQAGGGLAtRIVMLMPIAVPVLTLGFGYIAIFSGDT-- 148
Cdd:COG1175   65 YARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLN-RKLRGRGFF-RTLFFLPWVISPVVVALIWKWLFNPDYgl 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 149 ------------LPWLGT----LPLMIAAHAVLTLPYLLQTLLSDLRHLGLARLEAcAATLGATPLRQFFTIVLPNLRHS 212
Cdd:COG1175  143 lnallgalglepINWLGDpslaLPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEA-ARIDGASPWQRFRRITLPLLRPT 221

                        170
                 ....*....|....*...
gi 981368628 213 LFSGLVMvaaLSIGEFQI 230
Cdd:COG1175  222 ILFVLVL---STIGALQV 236
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 64-236 2.79e-07

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 50.62  E-value: 2.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  64 AGFTAHWFTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLMPIAVPVLTLGFGYIAI 143
Cdd:PRK10592  45 AGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 144 FS--GDTLPW---LGTLPLMIAaHAVLTLPYLLQTLLSDLRHLGLArLEACAATLGATPLRQFFTIVLPNLRHSLFSGLV 218
Cdd:PRK10592 125 FValAHAIGWpadRGMLTIWLA-HVTFCTAYVAVVISSRLRELDRS-IEEAAMDLGATPLKVFFVITLPMIMPAIISGWL 202

                        170
                 ....*....|....*...
gi 981368628 219 MVAALSIGEFQISNLIAG 236
Cdd:PRK10592 203 LAFTLSLDDLVIASFVSG 220
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 16-226 6.66e-07

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 50.25  E-value: 6.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  16 RRSKAVRPRIGRLLLQALVAAFGLYLLLPIALLLVGSVGQSWT-NTLLPAGFTAHWFTDLAANrgFTRAFGVSLMVALAC 94
Cdd:COG4135  291 SGRRGLGDPALRRLGLALMLLIALLSLLGLALLLLWSFAGRWRfPDALPSSWTLRFWQRAAPG--LLEPLGNTLLLALAS 368

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  95 CALNATIGLPLAYALHHRAQAGGGLATRIVMLmPIAVPVLTLGFGYIAIFSgdTLPWLGTLPLMIAAHAVLTLPYLLQTL 174
Cdd:COG4135  369 ALIALVLVLACLEAEARRGRRPGRRALWLLYL-PLLVPQIAFLFGLQVLLL--RLGLDGTWLAVIWAHLVFVLPYVFLSL 445

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 981368628 175 LSDLRHLGlARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIG 226
Cdd:COG4135  446 AGPWRALD-PRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVA 496
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 60-210 1.13e-06

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 48.94  E-value: 1.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  60 TLLPAGFTAHWFTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIV---MLMPIAVPVLTL 136
Cdd:COG0395   52 SLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLIlatLMIPGQVLLIPL 131

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 981368628 137 gfgYIaIFSGdtLPWLGTLPLMIAAHAVLTLP---YLLQTLLsdlrhLGLAR-LEACAATLGATPLRQFFTIVLPNLR 210
Cdd:COG0395  132 ---YL-LFRQ--LGLLNTYWGLILPYLAFGLPfgiFLLRQFF-----RSIPReLEEAARIDGASEFRIFWRIVLPLSK 198
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
83-236 4.03e-06

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 47.06  E-value: 4.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  83 AFGVSLMVALACCALNATIGLPLAYALHhRAQAGGGLATRIVMLMPIAVPVLTLGFGYIAIFS--GDTLPWLGTLPLMIA 160
Cdd:PRK10971  59 AYKVTLLSAFVASIFNAVFGLLMAWILT-RYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSvnGWYGEWLAKFDIKVT 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 161 --------AHAVLTLPYLLQTLLSDLRHLGLARLEAcAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQISN 232
Cdd:PRK10971 138 ytwlgiavAMAFTSIPFVVRTVQPVLEELGPEYEEA-AETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVI 216


                 ....
gi 981368628 233 LIAG 236
Cdd:PRK10971 217 FIAG 220
modB PRK09421
molybdate ABC transporter permease subunit;
185-228 1.84e-05

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 44.91  E-value: 1.84e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 981368628 185 RLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEF 228
Cdd:PRK09421 121 KLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 63-230 6.44e-05

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 43.45  E-value: 6.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  63 PAGFTAHWFTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLMpIAVP----VLTLGF 138
Cdd:PRK15050  54 EHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTF-VAFPsfliTLAFTF 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 139 GY----------IAIFSGDTLP--WLGTLPLMIAAHAVLTLPYLLQTLLSDLRHLGLARLEAcAATLGATPLRQFFTIVL 206
Cdd:PRK15050 133 LYgsagsvnialQRLFGLEAPPldFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEA-AASLGASPWRVARRVIL 211

                        170       180
                 ....*....|....*....|....
gi 981368628 207 PNLRHSLFSGLVMVAALSIGEFQI 230
Cdd:PRK15050 212 PEAWPALAAGGSLCLLLTLNEFGI 235
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 90-236 9.70e-05

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 43.16  E-value: 9.70e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  90 VALACCALnatIGLPLAYALHHRAQAggglaTRIVMLMPIAVP----VLTLGFGYIAIFSGD-----TLPWLGTL--PLM 158
Cdd:PRK10683 108 ISTLCCLL---IGYPLAWAVAHSKPS-----TRNILLLLVILPswtsFLIRVYAWMGILKNNgvlnnFLLWLGVIdqPLT 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 159 IAaHAVLT---------LPYLLQTLLSDLRHLGLARLEAcAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQ 229
Cdd:PRK10683 180 IL-HTNLAvyigivyayLPFMVLPIYTALTRIDYSLVEA-ALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFV 257


                 ....*..
gi 981368628 230 ISNLIAG 236
Cdd:PRK10683 258 IPELLGG 264
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 76-248 3.10e-04

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 41.83  E-value: 3.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628   76 ANRGFTRAFGVSLMVALACCALNATIGLPLAYA---LHHRAQAGGGLATRIVMLMPIAVPVLTLGFGYIAIFSGDTLPWL 152
Cdd:TIGR01253 317 ANPQLWQALGTSLRIALAAALLALTLAIALLLLsreLEALHKMKAGQFIEMAGMLILAIPGIVLAMGFFLLLNDRDFLNI 396

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  153 GTLPLMIAAHAVLTLPYLLQTLLSDLRHLgLARLEACAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQISN 232
Cdd:TIGR01253 397 DADGIVIFCNALMAIPFALKILEAPFHDI-MARYEMLCNSLGIEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIA 475

                         170
                  ....*....|....*.
gi 981368628  233 LIAGFRYRNYPIVLLQ 248
Cdd:TIGR01253 476 LFGNDDFRSLPFLLYQ 491
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
83-236 4.75e-04

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 40.89  E-value: 4.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  83 AFGVSLMVALACCALNATIGLPLAYaLHHRAQAGGGLATRIVMLMPIAVPVLTLGFGYIaIFSGDTLP---WLG------ 153
Cdd:PRK11602  65 AIWLTVLIALIAVPVNLVFGILLAW-LVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYL-LFYGSNGPlggWLDehnlql 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 154 --TLPLMIAAHAVLTLPYLLQTLLSDLRHLGLARLEAcAATLGATPLRQFFTIVLPNLRHSLFSGLVMVAALSIGEFQIS 231
Cdd:PRK11602 143 mfSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEA-AILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAV 221


                 ....*
gi 981368628 232 NLIAG 236
Cdd:PRK11602 222 SVVSG 226
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 50-225 4.84e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 40.52  E-value: 4.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628  50 VGSVGQSWTNTLLPA-GFTAHWFTDLAANRGFTRAFGVSLMVALACCALNATIGLPLAYALHHRAQAGGGLATRIVMLMP 128
Cdd:COG0600   28 LAARLGLVPPFLLPSpSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRP 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981368628 129 IA----VPVLTLGFGYiaifsgdtlpwlgTLPLMIAAHAVLTLPYLLQTLLSDLRHLGLARLEAcAATLGATPLRQFFTI 204
Cdd:COG0600  108 IPplalAPLLILWFGI-------------GEASKIFVIFLGAFFPILLNTAAGVRSVDPELLEL-ARSLGASRWQILRKV 173

                        170       180
                 ....*....|....*....|.
gi 981368628 205 VLPNLRHSLFSGLVMVAALSI 225
Cdd:COG0600  174 VLPAALPYIFTGLRIALGLAW 194
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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