AsnC family transcriptional regulator [Burkholderia cepacia]
Lrp/AsnC family transcriptional regulator( domain architecture ID 11445815)
Lrp/AsnC (leucine-responsive regulatory protein/asparagine synthase C) family transcriptional regulator regulates many cellular processes such as amino acid metabolism, pili synthesis, and DNA repair and recombination
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Lrp | COG1522 | DNA-binding transcriptional regulator, Lrp family [Transcription]; |
5-141 | 2.30e-26 | |||
DNA-binding transcriptional regulator, Lrp family [Transcription]; : Pssm-ID: 441131 [Multi-domain] Cd Length: 138 Bit Score: 96.77 E-value: 2.30e-26
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Name | Accession | Description | Interval | E-value | |||
Lrp | COG1522 | DNA-binding transcriptional regulator, Lrp family [Transcription]; |
5-141 | 2.30e-26 | |||
DNA-binding transcriptional regulator, Lrp family [Transcription]; Pssm-ID: 441131 [Multi-domain] Cd Length: 138 Bit Score: 96.77 E-value: 2.30e-26
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HTH_ASNC | smart00344 | helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ... |
5-113 | 1.31e-19 | |||
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli) Pssm-ID: 214628 [Multi-domain] Cd Length: 108 Bit Score: 78.33 E-value: 1.31e-19
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HTH_AsnC-type | pfam13404 | AsnC-type helix-turn-helix domain; |
6-46 | 5.01e-10 | |||
AsnC-type helix-turn-helix domain; Pssm-ID: 433180 [Multi-domain] Cd Length: 41 Bit Score: 51.99 E-value: 5.01e-10
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PRK11169 | PRK11169 | leucine-responsive transcriptional regulator Lrp; |
5-146 | 3.57e-08 | |||
leucine-responsive transcriptional regulator Lrp; Pssm-ID: 183009 [Multi-domain] Cd Length: 164 Bit Score: 49.76 E-value: 3.57e-08
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birA_repr_reg | TIGR00122 | BirA biotin operon repressor domain; This model represents the amino-terminal helix-turn-helix ... |
8-69 | 7.10e-04 | |||
BirA biotin operon repressor domain; This model represents the amino-terminal helix-turn-helix repressor region of the biotin--acetyl-CoA-carboxylase ligase/biotin operon repressor bifunctional protein BirA. In many species, the biotin--acetyl-CoA-carboxylase ligase ortholog lacks this DNA-binding repressor region and therefore is not equivalent to the well-characterized BirA of E. coli. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. [Regulatory functions, DNA interactions] Pssm-ID: 272918 [Multi-domain] Cd Length: 69 Bit Score: 36.29 E-value: 7.10e-04
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HTH_ARSR | cd00090 | Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
2-58 | 6.89e-03 | |||
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 33.81 E-value: 6.89e-03
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Name | Accession | Description | Interval | E-value | |||
Lrp | COG1522 | DNA-binding transcriptional regulator, Lrp family [Transcription]; |
5-141 | 2.30e-26 | |||
DNA-binding transcriptional regulator, Lrp family [Transcription]; Pssm-ID: 441131 [Multi-domain] Cd Length: 138 Bit Score: 96.77 E-value: 2.30e-26
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HTH_ASNC | smart00344 | helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ... |
5-113 | 1.31e-19 | |||
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli) Pssm-ID: 214628 [Multi-domain] Cd Length: 108 Bit Score: 78.33 E-value: 1.31e-19
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HTH_AsnC-type | pfam13404 | AsnC-type helix-turn-helix domain; |
6-46 | 5.01e-10 | |||
AsnC-type helix-turn-helix domain; Pssm-ID: 433180 [Multi-domain] Cd Length: 41 Bit Score: 51.99 E-value: 5.01e-10
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HTH_24 | pfam13412 | Winged helix-turn-helix DNA-binding; |
7-51 | 9.52e-10 | |||
Winged helix-turn-helix DNA-binding; Pssm-ID: 404317 [Multi-domain] Cd Length: 45 Bit Score: 51.28 E-value: 9.52e-10
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AsnC_trans_reg | pfam01037 | Lrp/AsnC ligand binding domain; The l-leucine-responsive regulatory protein (Lrp/AsnC) family ... |
74-141 | 1.77e-08 | |||
Lrp/AsnC ligand binding domain; The l-leucine-responsive regulatory protein (Lrp/AsnC) family is a family of similar bacterial transcription regulatory proteins. The family is named after two E. coli proteins involved in regulating amino acid metabolism. This entry corresponds to the usually C-terminal regulatory ligand binding domain. Structurally this domain has a dimeric alpha/beta barrel fold. This domain binds almost exclusively amino acids but also 4-hydroxyphenylpyruvate and kynurenine (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). Pssm-ID: 426007 Cd Length: 73 Bit Score: 48.68 E-value: 1.77e-08
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PRK11169 | PRK11169 | leucine-responsive transcriptional regulator Lrp; |
5-146 | 3.57e-08 | |||
leucine-responsive transcriptional regulator Lrp; Pssm-ID: 183009 [Multi-domain] Cd Length: 164 Bit Score: 49.76 E-value: 3.57e-08
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COG2345 | COG2345 | Predicted transcriptional regulator, ArsR family [Transcription]; |
5-59 | 4.11e-06 | |||
Predicted transcriptional regulator, ArsR family [Transcription]; Pssm-ID: 441914 [Multi-domain] Cd Length: 217 Bit Score: 44.91 E-value: 4.11e-06
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PRK11179 | PRK11179 | DNA-binding transcriptional regulator AsnC; Provisional |
5-57 | 1.14e-04 | |||
DNA-binding transcriptional regulator AsnC; Provisional Pssm-ID: 183019 [Multi-domain] Cd Length: 153 Bit Score: 40.08 E-value: 1.14e-04
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birA_repr_reg | TIGR00122 | BirA biotin operon repressor domain; This model represents the amino-terminal helix-turn-helix ... |
8-69 | 7.10e-04 | |||
BirA biotin operon repressor domain; This model represents the amino-terminal helix-turn-helix repressor region of the biotin--acetyl-CoA-carboxylase ligase/biotin operon repressor bifunctional protein BirA. In many species, the biotin--acetyl-CoA-carboxylase ligase ortholog lacks this DNA-binding repressor region and therefore is not equivalent to the well-characterized BirA of E. coli. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. [Regulatory functions, DNA interactions] Pssm-ID: 272918 [Multi-domain] Cd Length: 69 Bit Score: 36.29 E-value: 7.10e-04
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HTH_ARSR | cd00090 | Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
2-58 | 6.89e-03 | |||
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 33.81 E-value: 6.89e-03
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PRK10553 | PRK10553 | chaperone NapD; |
81-133 | 7.82e-03 | |||
chaperone NapD; Pssm-ID: 182542 Cd Length: 87 Bit Score: 34.00 E-value: 7.82e-03
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Blast search parameters | ||||
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