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Conserved domains on  [gi|976613635|gb|KVF10738|]
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hypothetical protein WJ04_03795 [Burkholderia vietnamiensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2866 super family cl12627
Protein of unknown function (DUF2866); This bacterial family of proteins have no known ...
 21-79 2.77e-25

Protein of unknown function (DUF2866); This bacterial family of proteins have no known function.


The actual alignment was detected with superfamily member pfam11065:

Pssm-ID: 431632  Cd Length: 64  Bit Score: 89.11  E-value: 2.77e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 976613635  21 PVQSCRVSVEMLRPWGRPYRLVEWTMHLDAPARRQIVPAESTDEQIAEVVASHVPGRLY 79
Cdd:pfam11065  1 NVRSCRVSEPIQHPWGRGYRLVEWTMDHDGEISRRVVPAESTEAEIAEAVRSHVPGRRY 59
 
Name Accession Description Interval E-value
DUF2866 pfam11065
Protein of unknown function (DUF2866); This bacterial family of proteins have no known ...
 21-79 2.77e-25

Protein of unknown function (DUF2866); This bacterial family of proteins have no known function.


Pssm-ID: 431632  Cd Length: 64  Bit Score: 89.11  E-value: 2.77e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 976613635  21 PVQSCRVSVEMLRPWGRPYRLVEWTMHLDAPARRQIVPAESTDEQIAEVVASHVPGRLY 79
Cdd:pfam11065  1 NVRSCRVSEPIQHPWGRGYRLVEWTMDHDGEISRRVVPAESTEAEIAEAVRSHVPGRRY 59
 
Name Accession Description Interval E-value
DUF2866 pfam11065
Protein of unknown function (DUF2866); This bacterial family of proteins have no known ...
 21-79 2.77e-25

Protein of unknown function (DUF2866); This bacterial family of proteins have no known function.


Pssm-ID: 431632  Cd Length: 64  Bit Score: 89.11  E-value: 2.77e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 976613635  21 PVQSCRVSVEMLRPWGRPYRLVEWTMHLDAPARRQIVPAESTDEQIAEVVASHVPGRLY 79
Cdd:pfam11065  1 NVRSCRVSEPIQHPWGRGYRLVEWTMDHDGEISRRVVPAESTEAEIAEAVRSHVPGRRY 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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