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Conserved domains on  [gi|9758178|dbj|BAB08563|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

nsLTP_like domain-containing protein( domain architecture ID 10140340)

nsLTP_like domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
nsLTP_like cd04660
nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of ...
 33-104 1.23e-22

nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.


:

Pssm-ID: 240018  Cd Length: 73  Bit Score: 83.57  E-value: 1.23e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 9758178   33 CNINANHLEKCRPAVIGDNPP-SPIKECCELLQAANLKCICRFKSVLPVLAVYPSKVQALLSKCGLTTIPPAC 104
Cdd:cd04660   1 CNMDLDLLAECQPYVTGPNPPpPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPPSSC 73
 
Name Accession Description Interval E-value
nsLTP_like cd04660
nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of ...
 33-104 1.23e-22

nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.


Pssm-ID: 240018  Cd Length: 73  Bit Score: 83.57  E-value: 1.23e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 9758178   33 CNINANHLEKCRPAVIGDNPP-SPIKECCELLQAANLKCICRFKSVLPVLAVYPSKVQALLSKCGLTTIPPAC 104
Cdd:cd04660   1 CNMDLDLLAECQPYVTGPNPPpPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPPSSC 73
 
Name Accession Description Interval E-value
nsLTP_like cd04660
nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of ...
 33-104 1.23e-22

nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.


Pssm-ID: 240018  Cd Length: 73  Bit Score: 83.57  E-value: 1.23e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 9758178   33 CNINANHLEKCRPAVIGDNPP-SPIKECCELLQAANLKCICRFKSVLPVLAVYPSKVQALLSKCGLTTIPPAC 104
Cdd:cd04660   1 CNMDLDLLAECQPYVTGPNPPpPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPPSSC 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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