|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
1-589 |
0e+00 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 895.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 1 MPTVSVKRDLLFQALGRSYTDEEFDELCFEFGLELDEITSEKEIINKEQG----DGKAEGASEIILYKIDVPANRYDLLC 76
Cdd:PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHldeeEDGGADDDEEVIYKIDVPANRYDLLC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 77 LEGLVRGLQVFKERIRAPRYKRITLPTGELQRLSIMEETAQVRPFAVAAVLRNITLTKDRYDSLIDLQEKLHQNICRKRS 156
Cdd:PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 157 LVAIGTHDLDTVSGPFIYTAKPPSEIKFKPLNQDKEYTASEIMDLYRTDSHLRHYLHIIENEPLYPVIYDSNGVVLSMPP 236
Cdd:PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 237 IINGDHTKINLNTRNVFIECTATDFTKAKIVLDILVTMFSEYCQKPFTVEATEVTYPNGKSYNFPELAYRREKIKPDIMN 316
Cdd:PLN02265 241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYIN 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 317 KKIGISETPASLAKLLTRMCLKS-HVIGNGNNIEVEIPPTRSDIIHACDIIEDAAIAYGYNNIQMTIPKTYTIANQFPLN 395
Cdd:PLN02265 321 SSIGVSLDAEEVASLLNKMQLQAeQSSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQPLN 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 396 NLTELLRQDLAAAGFTEALTFALCSQEDIANKMGIDISATKAVHIANPKTAEFQVARTTLLPGLLKTIASNRKMPLPLKL 475
Cdd:PLN02265 401 QFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPIKL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 476 FEISDIVVKDSTKDVGARNHRHLCAVYHNKNPGFEVIHGLLDRVMQLLDVPP---SKENGYYIKATEDSAFFPGRCAAIF 552
Cdd:PLN02265 481 FEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFveiGDNNGYYVEPSNEPEYFPGRQASII 560
|
570 580 590
....*....|....*....|....*....|....*..
gi 975115691 553 AKGHNIGNLGVLHPDVITKFELTMPCSALEITIESFL 589
Cdd:PLN02265 561 YKGKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597
|
|
| pheT_arch |
TIGR00471 |
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA ... |
1-589 |
1.32e-164 |
|
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273096 [Multi-domain] Cd Length: 551 Bit Score: 480.40 E-value: 1.32e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 1 MPTVSVKRDLLFqalgRSYTDEEFDELCFEFGLELDEItsekeiinkeqgDGKAEGASEIilyKIDVPANRYDLLCLEGL 80
Cdd:TIGR00471 1 MPTVTVYKDDLE----DLLIGTDRDEILEELPMMGDEI------------EGFDEESPEI---KVEFNPNRPDLLSVEGL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 81 VRGLQVFKERIRAPRYKRITLPTGELqrlSIMEETAQVRPFAVAAVLRNITLTKDRYDSLIDLQEKLHQNICRKRSLVAI 160
Cdd:TIGR00471 62 ARSLRGYLGIEKGLKSYDSKKGDVKL---TVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKVAI 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 161 GTHDLDTVSGPFIYTAKPPSEIKFKPLNQDKEYTASEIMDLYRTDshlRHYLHIIENEPLYPVIYDSNGVVLSMPPIING 240
Cdd:TIGR00471 139 GIHDLDKVEFPFHYKAVSPNGIKFVPLNSDQEMTPDEILEEHPKG---IRYAHIIEDSDKFPLILDSKDDVLSMPPIINS 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 241 DHTKINLNTRNVFIECTATDFTKAKIVLDILVTMFSEYCQKPFTVEatEVTYPNGkSYNFPELAYRREKIKPDIMNKKIG 320
Cdd:TIGR00471 216 ELTKLTVNTRNLLIDVTGTDKTAVEITLNIACTMFADRGDGRITVV--EVERPDE-HLGQPNLAPRFMEVSVEYINSLLG 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 321 ISETPASLAKLLTRMCLksHVIGNGNNIEVEIPPTRSDIIHACDIIEDAAIAYGYNNIQMTIPKTYTIANQFPLNNLTEL 400
Cdd:TIGR00471 293 LNLSADEIAHSLKKMRL--DAVQSDEKLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPLNKVSDI 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 401 LRQDLAAAGFTEALTFALCSQEDIANKMgiDISATKAVHIANPKTAEFQVARTTLLPGLLKTIASNRKMPLPLKLFEISD 480
Cdd:TIGR00471 371 IREIMVGLGFQEVIPLTLTSEEVNFKRM--RIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGD 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 481 IVVKDSTKDVGARNHRHLCAVYHNKNPGFEVIHGLLDRVMQLLDVppskenGYYIKATEDSAFFPGRCAAIFAKGHNIGN 560
Cdd:TIGR00471 449 VVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALARELGI------EYEIEESEHPSFIPGRGAKIVFEGKAIGH 522
|
570 580
....*....|....*....|....*....
gi 975115691 561 LGVLHPDVITKFELTMPCSALEITIESFL 589
Cdd:TIGR00471 523 FGEIHPEVLTNFELEFPVSAFEVNIEVFL 551
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
378-583 |
1.87e-58 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 194.31 E-value: 1.87e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 378 IQMTIPKTYTIANQ-FPLNNLTELLRQDLAAAGFTEALTFALCSQEDiANKMGIDISATKAVHIANPKTAEFQVARTTLL 456
Cdd:pfam17759 1 IPSTLPKGPTTGGGlTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKD-LDKLLEDDPRRKAVKLANPLSEELSVMRTSLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 457 PGLLKTIASNRKMPLP-LKLFEISDIVVKDStKDVGARNHRHLCAV-YHNKNP----------GFEVIHGLLDRVMQLLD 524
Cdd:pfam17759 80 PGLLETLAYNLNRGNPdVRLFEIGRVFLPDE-LEELPREPRRLAGLlTGKRLPeswqgkarpvDFYDLKGIVEALLAALG 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 975115691 525 VPpskenGYYIKATEDSAFFPGRCAAIFAKGHNIGNLGVLHPDVITKFELTMPCSALEI 583
Cdd:pfam17759 159 ID-----DYEFEAADHPALHPGRSAEILVGGKVIGFIGELHPEVAKNFDLPQPVYVFEL 212
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
393-588 |
7.42e-50 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 170.90 E-value: 7.42e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 393 PLNNLTELLRQDLAAAGFTEALTFALCSQEDIANkmgIDISATKAVHIANPKTAEFQVARTTLLPGLLKTIASNRKMP-L 471
Cdd:cd00769 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEEAEL---FDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKnK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 472 PLKLFEISDIVVKDSTkdvGARNHRHLCAVY-----------HNKNPGFEVIHGLLDRVMQLLDVPPSkengYYIKATED 540
Cdd:cd00769 78 PLRLFEIGRVFLKDED---GPEEEEHLAALLsgnrepeswqgKGRPVDFYDAKGILEALLRALGIIVE----FELEELDA 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 975115691 541 SAFFPGRCAAIFAKGHNIGNLGVLHPDVITKFELTMPCSALEITIESF 588
Cdd:cd00769 151 DLFHPGRSAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
223-589 |
1.72e-48 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 180.75 E-value: 1.72e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 223 VIYDSNGVVlSMPPIINGDHTKINLNTRNVFIEC----------TA----------------TDFTKAKIVLDILVTMFS 276
Cdd:COG0072 303 VIADDEGPL-ALAGVMGGEDSEVTEETTDVLLESayfdpvsirrTArrlglhsdasyrfergVDPALTVAALERATQLIL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 277 EYCQ---KPFTVEATEVTYPNgksynfPELAYRREKIkpdimNKKIGISETPASLAKLLTRmcLKSHVIGNGNNIEVEIP 353
Cdd:COG0072 382 EIAGgevGPGIVDVYPEPPEP------KTITLRLARI-----NRLLGVEIPAEEIEEILER--LGFEVEEDGDGLTVTVP 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 354 PTRSDIIHACDIIEDaaIA--YGYNNIQMTIPK-TYTIANQFPLNNLTELLRQDLAAAGFTEALTFALCSQEDiANKMGI 430
Cdd:COG0072 449 SWRFDIEIEADLIEE--VAriYGYDNIPSTLPRaPLAGGGLTEAQRLRRRVRRALAARGYQEVITYSFVSPED-ADLFGL 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 431 DisaTKAVHIANPKTAEFQVARTTLLPGLLKTIASN--RKMPlPLKLFEISDIVVKDSTKDvgARNHRHLCAV----YHN 504
Cdd:COG0072 526 R---REAVRLANPISEDLSVMRTSLLPGLLEAAAYNlnRGQK-DVRLFEIGRVFLPDEGEE--PREPLHLAGVltgnREP 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 505 KNPG--------FEVIhGLLDRVMQLLDVPpskenGYYIKATEDSAFFPGRCAAIFAKGHNIGNLGVLHPDVITKFELTM 576
Cdd:COG0072 600 ESWGgkarpvdfFDLK-GDVEALLAALGVP-----KLEFEAAEHPALHPGRSAEILLGGKVIGFIGELHPKVLKALDLPG 673
|
410
....*....|...
gi 975115691 577 PCSALEITIESFL 589
Cdd:COG0072 674 PVYVFELDLDALL 686
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
119-279 |
1.00e-28 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 112.35 E-value: 1.00e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 119 RPFAVAAVLRNITLTkdrYDSLIDLQEKLHQNICRKRSlVAIGTHDLDTVSGPFIYTAKPPSEIKFK--PLNQDKEYTas 196
Cdd:smart00873 1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRPIN-NVVDITNYVSLETGQPLHAFDLDKIKGKdiPLRRAKEGE-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 197 EIMDLYRTDSHLRHYLHIIENEPLYPVIYDSNGV----------VLSMPPIINGDHT-KINLNTRNVFIECTA-----TD 260
Cdd:smart00873 75 KFETLDGKEYELDEGDLVIADDEGPLALAGVMGGeesevtenttVIFLEPAIFSPRTiRITARTLNLFTDASGrfergVD 154
|
170
....*....|....*....
gi 975115691 261 FTKAKIVLDILVTMFSEYC 279
Cdd:smart00873 155 PELVELALDRAAALLLEIC 173
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
1-589 |
0e+00 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 895.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 1 MPTVSVKRDLLFQALGRSYTDEEFDELCFEFGLELDEITSEKEIINKEQG----DGKAEGASEIILYKIDVPANRYDLLC 76
Cdd:PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHldeeEDGGADDDEEVIYKIDVPANRYDLLC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 77 LEGLVRGLQVFKERIRAPRYKRITLPTGELQRLSIMEETAQVRPFAVAAVLRNITLTKDRYDSLIDLQEKLHQNICRKRS 156
Cdd:PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 157 LVAIGTHDLDTVSGPFIYTAKPPSEIKFKPLNQDKEYTASEIMDLYRTDSHLRHYLHIIENEPLYPVIYDSNGVVLSMPP 236
Cdd:PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 237 IINGDHTKINLNTRNVFIECTATDFTKAKIVLDILVTMFSEYCQKPFTVEATEVTYPNGKSYNFPELAYRREKIKPDIMN 316
Cdd:PLN02265 241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYIN 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 317 KKIGISETPASLAKLLTRMCLKS-HVIGNGNNIEVEIPPTRSDIIHACDIIEDAAIAYGYNNIQMTIPKTYTIANQFPLN 395
Cdd:PLN02265 321 SSIGVSLDAEEVASLLNKMQLQAeQSSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQPLN 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 396 NLTELLRQDLAAAGFTEALTFALCSQEDIANKMGIDISATKAVHIANPKTAEFQVARTTLLPGLLKTIASNRKMPLPLKL 475
Cdd:PLN02265 401 QFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPIKL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 476 FEISDIVVKDSTKDVGARNHRHLCAVYHNKNPGFEVIHGLLDRVMQLLDVPP---SKENGYYIKATEDSAFFPGRCAAIF 552
Cdd:PLN02265 481 FEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFveiGDNNGYYVEPSNEPEYFPGRQASII 560
|
570 580 590
....*....|....*....|....*....|....*..
gi 975115691 553 AKGHNIGNLGVLHPDVITKFELTMPCSALEITIESFL 589
Cdd:PLN02265 561 YKGKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597
|
|
| pheT_arch |
TIGR00471 |
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA ... |
1-589 |
1.32e-164 |
|
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273096 [Multi-domain] Cd Length: 551 Bit Score: 480.40 E-value: 1.32e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 1 MPTVSVKRDLLFqalgRSYTDEEFDELCFEFGLELDEItsekeiinkeqgDGKAEGASEIilyKIDVPANRYDLLCLEGL 80
Cdd:TIGR00471 1 MPTVTVYKDDLE----DLLIGTDRDEILEELPMMGDEI------------EGFDEESPEI---KVEFNPNRPDLLSVEGL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 81 VRGLQVFKERIRAPRYKRITLPTGELqrlSIMEETAQVRPFAVAAVLRNITLTKDRYDSLIDLQEKLHQNICRKRSLVAI 160
Cdd:TIGR00471 62 ARSLRGYLGIEKGLKSYDSKKGDVKL---TVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKVAI 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 161 GTHDLDTVSGPFIYTAKPPSEIKFKPLNQDKEYTASEIMDLYRTDshlRHYLHIIENEPLYPVIYDSNGVVLSMPPIING 240
Cdd:TIGR00471 139 GIHDLDKVEFPFHYKAVSPNGIKFVPLNSDQEMTPDEILEEHPKG---IRYAHIIEDSDKFPLILDSKDDVLSMPPIINS 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 241 DHTKINLNTRNVFIECTATDFTKAKIVLDILVTMFSEYCQKPFTVEatEVTYPNGkSYNFPELAYRREKIKPDIMNKKIG 320
Cdd:TIGR00471 216 ELTKLTVNTRNLLIDVTGTDKTAVEITLNIACTMFADRGDGRITVV--EVERPDE-HLGQPNLAPRFMEVSVEYINSLLG 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 321 ISETPASLAKLLTRMCLksHVIGNGNNIEVEIPPTRSDIIHACDIIEDAAIAYGYNNIQMTIPKTYTIANQFPLNNLTEL 400
Cdd:TIGR00471 293 LNLSADEIAHSLKKMRL--DAVQSDEKLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPLNKVSDI 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 401 LRQDLAAAGFTEALTFALCSQEDIANKMgiDISATKAVHIANPKTAEFQVARTTLLPGLLKTIASNRKMPLPLKLFEISD 480
Cdd:TIGR00471 371 IREIMVGLGFQEVIPLTLTSEEVNFKRM--RIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGD 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 481 IVVKDSTKDVGARNHRHLCAVYHNKNPGFEVIHGLLDRVMQLLDVppskenGYYIKATEDSAFFPGRCAAIFAKGHNIGN 560
Cdd:TIGR00471 449 VVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALARELGI------EYEIEESEHPSFIPGRGAKIVFEGKAIGH 522
|
570 580
....*....|....*....|....*....
gi 975115691 561 LGVLHPDVITKFELTMPCSALEITIESFL 589
Cdd:TIGR00471 523 FGEIHPEVLTNFELEFPVSAFEVNIEVFL 551
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
378-583 |
1.87e-58 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 194.31 E-value: 1.87e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 378 IQMTIPKTYTIANQ-FPLNNLTELLRQDLAAAGFTEALTFALCSQEDiANKMGIDISATKAVHIANPKTAEFQVARTTLL 456
Cdd:pfam17759 1 IPSTLPKGPTTGGGlTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKD-LDKLLEDDPRRKAVKLANPLSEELSVMRTSLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 457 PGLLKTIASNRKMPLP-LKLFEISDIVVKDStKDVGARNHRHLCAV-YHNKNP----------GFEVIHGLLDRVMQLLD 524
Cdd:pfam17759 80 PGLLETLAYNLNRGNPdVRLFEIGRVFLPDE-LEELPREPRRLAGLlTGKRLPeswqgkarpvDFYDLKGIVEALLAALG 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 975115691 525 VPpskenGYYIKATEDSAFFPGRCAAIFAKGHNIGNLGVLHPDVITKFELTMPCSALEI 583
Cdd:pfam17759 159 ID-----DYEFEAADHPALHPGRSAEILVGGKVIGFIGELHPEVAKNFDLPQPVYVFEL 212
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
393-588 |
7.42e-50 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 170.90 E-value: 7.42e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 393 PLNNLTELLRQDLAAAGFTEALTFALCSQEDIANkmgIDISATKAVHIANPKTAEFQVARTTLLPGLLKTIASNRKMP-L 471
Cdd:cd00769 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEEAEL---FDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKnK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 472 PLKLFEISDIVVKDSTkdvGARNHRHLCAVY-----------HNKNPGFEVIHGLLDRVMQLLDVPPSkengYYIKATED 540
Cdd:cd00769 78 PLRLFEIGRVFLKDED---GPEEEEHLAALLsgnrepeswqgKGRPVDFYDAKGILEALLRALGIIVE----FELEELDA 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 975115691 541 SAFFPGRCAAIFAKGHNIGNLGVLHPDVITKFELTMPCSALEITIESF 588
Cdd:cd00769 151 DLFHPGRSAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198
|
|
| pheT |
PRK00629 |
phenylalanyl-tRNA synthetase subunit beta; Reviewed |
65-589 |
2.23e-49 |
|
phenylalanyl-tRNA synthetase subunit beta; Reviewed
Pssm-ID: 234804 [Multi-domain] Cd Length: 791 Bit Score: 183.45 E-value: 2.23e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 65 IDVPANRYDLLCLEGLVRGLQV-FKERIRAPRYKRITLPTGELQRLSIMEETAQVRpFAvAAVLRNITLTKDrydSLIDL 143
Cdd:PRK00629 159 ISLTPNRADCLSVRGIARELAAlLGLPLKLPEIEPVPATIDDKLPVEIEDPDLCPR-YA-GRVIKGVKNIAP---SPLWL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 144 QEKLHQNICRKRSLV---------AIG--TH--DLDTVSGPFIYTAKPPSEiKFKPLNqDKEYTASEIMdlyrtdshlrh 210
Cdd:PRK00629 234 QERLRAAGIRPINNVvditnyvmlELGqpLHafDLDKIGGGIVVRRAKEGE-KLTTLD-GKERTLDPED----------- 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 211 ylhiieneplyPVIYDSNGVVlSMPPIINGDHTKINLNTRNVFIEC----------TA------TD----FTK------A 264
Cdd:PRK00629 301 -----------LVIADDKKPL-ALAGVMGGEDSEVTENTTNVLLESayfdpvsirkTArrlglrTDasyrFERgvdpalT 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 265 KIVLDILVTMFSEYCQKPfTVEATEVTYPNGKSynfPELAYRREKIkpdimNKKIGISETPASLAKLLTRMCLKSHVIGN 344
Cdd:PRK00629 369 LLALERATALILELGGGE-VVEGVVDVYPLPKE---PTITLRLERI-----NRLLGTEISDEEIVDILKRLGFEVTEVDG 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 345 GNnIEVEIPPTRSDIIHACDIIEDaaIA--YGYNNIQMTIPK-TYTIANQFPLNNLTELLRQDLAAAGFTEALTFALCSQ 421
Cdd:PRK00629 440 DG-LTVTVPSWRFDIEIEEDLVEE--VAriYGYDNIPSTPPVaALTMGGLTEAQRLLRRLRRALAALGYQEVITYSFVSP 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 422 EDiANKMGIDisaTKAVHIANPKTAEFQVARTTLLPGLLKTIASN--RKMPLpLKLFEISDIVVKDSTKDvgaRNHRHLC 499
Cdd:PRK00629 517 ED-AKLFGLN---PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNlnRGNKD-VALFEIGRVFLPDGDLP---REPEHLA 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 500 AV----------YHNKNPGFEVIHGLLDRVMQLLDVPPSKengyYIKATEDSAFFPGRCAAIFAKGHNIGNLGVLHPDVI 569
Cdd:PRK00629 589 GVltgnrveeswGGKRPVDFFDLKGDVEALLEALGLPEVE----FVAEFEAAALHPGRSAEIYLDGKVIGFIGELHPKVL 664
|
570 580
....*....|....*....|
gi 975115691 570 TKFELTMPCSALEITIESFL 589
Cdd:PRK00629 665 KKLDLPGRTYVFELDLDALL 684
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
223-589 |
1.72e-48 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 180.75 E-value: 1.72e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 223 VIYDSNGVVlSMPPIINGDHTKINLNTRNVFIEC----------TA----------------TDFTKAKIVLDILVTMFS 276
Cdd:COG0072 303 VIADDEGPL-ALAGVMGGEDSEVTEETTDVLLESayfdpvsirrTArrlglhsdasyrfergVDPALTVAALERATQLIL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 277 EYCQ---KPFTVEATEVTYPNgksynfPELAYRREKIkpdimNKKIGISETPASLAKLLTRmcLKSHVIGNGNNIEVEIP 353
Cdd:COG0072 382 EIAGgevGPGIVDVYPEPPEP------KTITLRLARI-----NRLLGVEIPAEEIEEILER--LGFEVEEDGDGLTVTVP 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 354 PTRSDIIHACDIIEDaaIA--YGYNNIQMTIPK-TYTIANQFPLNNLTELLRQDLAAAGFTEALTFALCSQEDiANKMGI 430
Cdd:COG0072 449 SWRFDIEIEADLIEE--VAriYGYDNIPSTLPRaPLAGGGLTEAQRLRRRVRRALAARGYQEVITYSFVSPED-ADLFGL 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 431 DisaTKAVHIANPKTAEFQVARTTLLPGLLKTIASN--RKMPlPLKLFEISDIVVKDSTKDvgARNHRHLCAV----YHN 504
Cdd:COG0072 526 R---REAVRLANPISEDLSVMRTSLLPGLLEAAAYNlnRGQK-DVRLFEIGRVFLPDEGEE--PREPLHLAGVltgnREP 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 505 KNPG--------FEVIhGLLDRVMQLLDVPpskenGYYIKATEDSAFFPGRCAAIFAKGHNIGNLGVLHPDVITKFELTM 576
Cdd:COG0072 600 ESWGgkarpvdfFDLK-GDVEALLAALGVP-----KLEFEAAEHPALHPGRSAEILLGGKVIGFIGELHPKVLKALDLPG 673
|
410
....*....|...
gi 975115691 577 PCSALEITIESFL 589
Cdd:COG0072 674 PVYVFELDLDALL 686
|
|
| PhetRS_B1 |
pfam18262 |
Phe-tRNA synthetase beta subunit B1 domain; This is the N-terminal domain found in human ... |
1-90 |
1.91e-36 |
|
Phe-tRNA synthetase beta subunit B1 domain; This is the N-terminal domain found in human cytosolic phenylalanyl tRNA synthetase beta subunit.
Pssm-ID: 408077 Cd Length: 83 Bit Score: 130.61 E-value: 1.91e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 1 MPTVSVKRDLLFQALGRSYTDEEFDELCFEFGLELDEITSEKEiinkeqgDGKAEGASEIILYKIDVPANRYDLLCLEGL 80
Cdd:pfam18262 1 MPTISVKKVRLFKVLGRVYTEEEFSDLCFEFGLELDEITSEEN-------QLKTSWRSEEVVYKIDIPANRYDLLCVEGL 73
|
90
....*....|
gi 975115691 81 VRGLQVFKER 90
Cdd:pfam18262 74 ATALLIFKGK 83
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
119-279 |
1.00e-28 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 112.35 E-value: 1.00e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 119 RPFAVAAVLRNITLTkdrYDSLIDLQEKLHQNICRKRSlVAIGTHDLDTVSGPFIYTAKPPSEIKFK--PLNQDKEYTas 196
Cdd:smart00873 1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRPIN-NVVDITNYVSLETGQPLHAFDLDKIKGKdiPLRRAKEGE-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 197 EIMDLYRTDSHLRHYLHIIENEPLYPVIYDSNGV----------VLSMPPIINGDHT-KINLNTRNVFIECTA-----TD 260
Cdd:smart00873 75 KFETLDGKEYELDEGDLVIADDEGPLALAGVMGGeesevtenttVIFLEPAIFSPRTiRITARTLNLFTDASGrfergVD 154
|
170
....*....|....*....
gi 975115691 261 FTKAKIVLDILVTMFSEYC 279
Cdd:smart00873 155 PELVELALDRAAALLLEIC 173
|
|
| B3_4 |
pfam03483 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
118-279 |
1.84e-19 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 427327 [Multi-domain] Cd Length: 174 Bit Score: 86.06 E-value: 1.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 118 VRPFAVAAVLRNITLT-------KDR--------YDSLIDLQEKLHQNICRkrslvAIGTHDLDTVSGPFIytakppsei 182
Cdd:pfam03483 1 ACPRYFGRVIRGVKKNrpspewlQRRlrragirpINNVVDITNYVMLELGQ-----PLHAFDLDKIAGDIV--------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 183 kfKPLNQDKEytasEIMDLYRTDSHLrhylhiienEPLYPVIYDSNGVVlSMPPIINGDHTKINLNTRNVFIECTA---- 258
Cdd:pfam03483 67 --VRLAKGGE----KFTTLDGKEREL---------DPGDLVIADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGfdpv 130
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 975115691 259 ----------------------TDFTKAKIVLDILVTMFSEYC 279
Cdd:pfam03483 131 airktarrlglrtdasyrfergVDPELVEAALDRATALLLELC 173
|
|
| B5 |
pfam03484 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
309-375 |
6.87e-17 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 460942 [Multi-domain] Cd Length: 67 Bit Score: 75.12 E-value: 6.87e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 975115691 309 KIKPDIMNKKIGISETPASLAKLLTRMCLKSHVIgNGNNIEVEIPPTRSDIIHACDIIEDAAIAYGY 375
Cdd:pfam03484 2 TLRLDRINRLLGIDLSAEEIVEILERLGFEVEEE-DGDTLTVTVPSYRPDILHEADLIEEVARIYGY 67
|
|
| B5 |
smart00874 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
301-375 |
8.98e-16 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 197942 [Multi-domain] Cd Length: 68 Bit Score: 71.76 E-value: 8.98e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 975115691 301 PELAYRREKIkpdimNKKIGISETPASLAKLLTRMCLKshVIGNGNNIEVEIPPTRSDIIHACDIIEDAAIAYGY 375
Cdd:smart00874 1 RTITLRLERI-----NRLLGLEILAEEIEEILKRLGFE--VEVSGDTLEVTVPSYRFDILIEADLIEEVARIYGY 68
|
|
| syfB |
CHL00192 |
phenylalanyl-tRNA synthetase beta chain; Provisional |
197-586 |
5.21e-11 |
|
phenylalanyl-tRNA synthetase beta chain; Provisional
Pssm-ID: 214391 [Multi-domain] Cd Length: 704 Bit Score: 65.50 E-value: 5.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 197 EIMDLYRTDSHLRHY-LHIIENEPLYP---VIYDS--------------NGVVLSMPPIINGDHTKINLNTRNVFIE--- 255
Cdd:CHL00192 158 EIYDLDKIYSKNTTSsLALSSKFALQKssfIASNSknielennilvvqaNNVIISIAGIISNEEIICDKNTKSILIEasi 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 256 CTATDFTKAKIVLDILvTMFSEYCQKPFTVEATEVTY--------------PNGKSYNFPELAYRREKIKPD-------- 313
Cdd:CHL00192 238 FDAAVIRKSSRKLGLR-TDRSIRYEKSLKNDNLLEAYyrlvsllrilnpklKCKFHFIYKKIKNSSRRIKLSykkikdil 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 314 --IMNKKIGISETPASLAKLLTRMCLKSHVIGNGNNIEVEIPPTRS-DIIHACDIIEDAAIAYGYNNIQMTIPKTYTIAN 390
Cdd:CHL00192 317 gpIKINTNTRYLSPKEITNALKRLNFKITYDSLKLNWEVLIPSYRKdDIVREIDVIEEIARIYGFNNFLSKLPNIKFIGR 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 391 QFPLNNLTELLRQDLAAAGFTEALTFALCSQEDIANkmgidisatKAVHIANPKTAEFQVARTTLLPGLLKTIASN-RKM 469
Cdd:CHL00192 397 LDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESFSK---------NEIKLKNPLIKDYSTLRSSLLPGLIEAVQENlKQG 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 470 PLPLKLFEISDIVVKDSTKDV-------GARNHRHLCAVYHNKNPGFEVIH--GLLDRVMQLLDVPpskengYYIKATED 540
Cdd:CHL00192 468 NSTLEGFEIGHVFNLDSSSIIeetelagGIFGGIDIRSSWSEKAQSLNWFEakGIIENFFQKLNLP------IYWKKYSD 541
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 975115691 541 S----AFFPGRCAAIF-AKGHNIGNLGVLHPDVITKFELTMPCSALEITIE 586
Cdd:CHL00192 542 LdekiNFHPYCTSEIFlSNGQKIGIFGQLHPLLANKLNLNTEIYLFEINLD 592
|
|
| B3/B4 |
COG3382 |
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only] ... |
117-279 |
2.64e-09 |
|
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only];
Pssm-ID: 442609 [Multi-domain] Cd Length: 233 Bit Score: 57.94 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 117 QVRPfAVAAVLRNITLTKD--RYDSLIDLQeklhqNICRKRSLVAIGTHDLDTVSGPFIYTAKPPSEIkFKPLNQDKEyt 194
Cdd:COG3382 77 RYRP-SAEALLRRVLKGGGlpRINPLVDLY-----NAVSLRYLLPIGGYDLDKIEGDLRLRLARGGES-FLPIGGDEE-- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 975115691 195 aseimdlyrtdshlrhyLHIIENEPLYpviYDSNGVVLSMPPIINGDHTKINLNTRNVFI------ECTATDFTKAkivL 268
Cdd:COG3382 148 -----------------EPPEPGEVVY---ADDEGVFCRRWPWRDSERTKVTEETKNALFiieglpGVSAEDLEAA---L 204
|
170
....*....|.
gi 975115691 269 DILVTMFSEYC 279
Cdd:COG3382 205 DELAELLERYL 215
|
|
| EAD7 |
pfam19960 |
Effector-associated domain 7; Effector-associated domains (EADs) are predicted to function as ... |
11-86 |
6.03e-03 |
|
Effector-associated domain 7; Effector-associated domains (EADs) are predicted to function as adaptor domains mediating protein-protein interactions. The EADs show a characteriztic architectural pattern. One copy is always fused, typically to the N- or C-terminus, of a core component of a biological conflict system; examples include VMAP, iSTAND, or GAP1. Further copies of the same EAD are fused to either effector or signal-transducing domains, or additional EADs. EAD pairs are frequently observed together on the genome in conserved gene neighborhoods, but can also be severed from such neighborhoods and located in distant regions, indicating EAD-EAD protein domain coupling attenuates collinear transcription requirements.
Pssm-ID: 437792 Cd Length: 62 Bit Score: 35.26 E-value: 6.03e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 975115691 11 LFQALGRSYTDEEFDELCFEFGLELDEItsekeiinkeQGDGKAEGASEIILYkidvpANRYDLlcLEGLVRGLQV 86
Cdd:pfam19960 1 LRELLVEAFSDDELRDLCFDLGVDFEFL----------SGDTKSAKTRELILY-----CERRGR--LDDLLAALRR 59
|
|
| |
