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cytochrome b, partial [Plasmodium ashfordi]
cytochrome b( domain architecture ID 13284717)
cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Cytochrom_B_C | pfam00032 | Cytochrome b(C-terminal)/b6/petD; |
40-80 | 1.83e-18 | |||
Cytochrome b(C-terminal)/b6/petD; : Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 73.67 E-value: 1.83e-18
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cytochrome_b_C super family | cl00193 | Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
4-94 | 6.81e-17 | |||
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD. The actual alignment was detected with superfamily member cd00290: Pssm-ID: 469649 [Multi-domain] Cd Length: 147 Bit Score: 71.14 E-value: 6.81e-17
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Name | Accession | Description | Interval | E-value | |||
Cytochrom_B_C | pfam00032 | Cytochrome b(C-terminal)/b6/petD; |
40-80 | 1.83e-18 | |||
Cytochrome b(C-terminal)/b6/petD; Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 73.67 E-value: 1.83e-18
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cytochrome_b_C | cd00290 | Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
4-94 | 6.81e-17 | |||
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD. Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 71.14 E-value: 6.81e-17
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CYTB | MTH00016 | cytochrome b; Validated |
4-80 | 5.84e-16 | |||
cytochrome b; Validated Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 71.63 E-value: 5.84e-16
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CYTB | MTH00191 | cytochrome b; Provisional |
4-96 | 7.60e-16 | |||
cytochrome b; Provisional Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 71.48 E-value: 7.60e-16
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QcrB/PetB | COG1290 | Cytochrome b subunit of the bc complex [Energy production and conversion]; |
11-80 | 7.41e-12 | |||
Cytochrome b subunit of the bc complex [Energy production and conversion]; Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 60.19 E-value: 7.41e-12
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cytb6/f_IV | TIGR01156 | cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
36-72 | 9.78e-08 | |||
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis] Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 47.48 E-value: 9.78e-08
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Name | Accession | Description | Interval | E-value | |||
Cytochrom_B_C | pfam00032 | Cytochrome b(C-terminal)/b6/petD; |
40-80 | 1.83e-18 | |||
Cytochrome b(C-terminal)/b6/petD; Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 73.67 E-value: 1.83e-18
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cytochrome_b_C | cd00290 | Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
4-94 | 6.81e-17 | |||
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD. Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 71.14 E-value: 6.81e-17
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CYTB | MTH00016 | cytochrome b; Validated |
4-80 | 5.84e-16 | |||
cytochrome b; Validated Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 71.63 E-value: 5.84e-16
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CYTB | MTH00191 | cytochrome b; Provisional |
4-96 | 7.60e-16 | |||
cytochrome b; Provisional Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 71.48 E-value: 7.60e-16
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CYTB | MTH00131 | cytochrome b; Provisional |
4-94 | 2.49e-14 | |||
cytochrome b; Provisional Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 66.98 E-value: 2.49e-14
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CYTB | MTH00074 | cytochrome b; Provisional |
4-87 | 4.59e-14 | |||
cytochrome b; Provisional Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 66.24 E-value: 4.59e-14
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CYTB | MTH00145 | cytochrome b; Provisional |
4-80 | 9.15e-14 | |||
cytochrome b; Provisional Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 65.70 E-value: 9.15e-14
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CYTB | MTH00034 | cytochrome b; Validated |
4-80 | 1.85e-13 | |||
cytochrome b; Validated Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 64.73 E-value: 1.85e-13
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CYTB | MTH00100 | cytochrome b; Provisional |
4-87 | 3.90e-13 | |||
cytochrome b; Provisional Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 63.89 E-value: 3.90e-13
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CYTB | MTH00022 | cytochrome b; Validated |
2-80 | 5.41e-13 | |||
cytochrome b; Validated Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 63.18 E-value: 5.41e-13
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CYTB | MTH00156 | cytochrome b; Provisional |
4-80 | 5.52e-13 | |||
cytochrome b; Provisional Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 63.26 E-value: 5.52e-13
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CYTB | MTH00119 | cytochrome b; Provisional |
4-87 | 6.54e-13 | |||
cytochrome b; Provisional Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 63.00 E-value: 6.54e-13
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QcrB/PetB | COG1290 | Cytochrome b subunit of the bc complex [Energy production and conversion]; |
11-80 | 7.41e-12 | |||
Cytochrome b subunit of the bc complex [Energy production and conversion]; Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 60.19 E-value: 7.41e-12
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CYTB | MTH00224 | cytochrome b; Provisional |
4-80 | 1.85e-11 | |||
cytochrome b; Provisional Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 59.16 E-value: 1.85e-11
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CYTB | MTH00086 | cytochrome b; Provisional |
11-89 | 2.17e-11 | |||
cytochrome b; Provisional Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 58.80 E-value: 2.17e-11
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CYTB | MTH00033 | cytochrome b; Provisional |
4-80 | 2.37e-11 | |||
cytochrome b; Provisional Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 58.80 E-value: 2.37e-11
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CYTB | MTH00053 | cytochrome b; Provisional |
8-80 | 1.53e-10 | |||
cytochrome b; Provisional Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 56.25 E-value: 1.53e-10
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PetD | COG5679 | Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
9-72 | 2.71e-09 | |||
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 51.33 E-value: 2.71e-09
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petD | CHL00058 | cytochrome b6/f complex subunit IV |
36-72 | 4.05e-09 | |||
cytochrome b6/f complex subunit IV Pssm-ID: 176998 Cd Length: 160 Bit Score: 51.16 E-value: 4.05e-09
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cytb6/f_IV | TIGR01156 | cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
36-72 | 9.78e-08 | |||
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis] Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 47.48 E-value: 9.78e-08
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CYTB | MTH00046 | cytochrome b; Validated |
10-79 | 9.77e-07 | |||
cytochrome b; Validated Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 45.36 E-value: 9.77e-07
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Blast search parameters | ||||
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